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Katherine H. Huang · SciRah

Researcher profile · Semantic Scholar

Katherine H. Huang

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Katherine H. Huang — researcher profile on SciRah

h-index: 34
Works: 62
Citations: 21K

Most-cited papers

Structure, Function and Diversity of the Healthy Human Microbiome
C. Huttenhower, D. Gevers, R. Knight, Sahar Abubucker +244 more
2012Nature11K citations Open access
Semantic Scholar
A framework for human microbiome research
B. Methé, K. Nelson, Mihai Pop, H. Creasy +244 more
2012Nature2,439 citations Open access
Semantic Scholar
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78
Diego A. Martinez, L. Larrondo, N. Putnam, M. D. Sollewijn Gelpke +11 more
2004Nature Biotechnology937 citations Open access
Semantic Scholar
Host genetic variation impacts microbiome composition across human body sites
R. Blekhman, J. Goodrich, Katherine H. Huang, Qi Sun +7 more
2015Genome Biology711 citations Open access
Semantic Scholar
Patterns and Implications of Gene Gain and Loss in the Evolution of Prochlorococcus
G. Kettler, A. Martiny, Katherine H. Huang, J. Zucker +10 more
2007PLoS Genetics544 citations Open access
Semantic Scholar
Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism.
L. Thompson, Qinglu Zeng, Libusha Kelly, Katherine H. Huang +3 more
2011Proceedings of the National Academy of Sciences of the United States of America497 citations Open access
Semantic Scholar
The Human Microbiome Project: A Community Resource for the Healthy Human Microbiome
D. Gevers, R. Knight, J. Petrosino, Katherine H. Huang +6 more
2012PLoS Biology469 citations Open access
Semantic Scholar
Identifying personal microbiomes using metagenomic codes
E. Franzosa, Katherine H. Huang, J. Meadow, D. Gevers +3 more
2015Proceedings of the National Academy of Sciences of the United States of America463 citations Open access
Semantic Scholar
MicrobesOnline: an integrated portal for comparative and functional genomics
P. Dehal, marcin p. joachimiak, M. Price, John T. Bates +9 more
2009Nucleic Acids Res.463 citations Open access
Semantic Scholar
A Quantitative Proteome Map of the Human Body
Lihua Jiang, Meng Wang, Shin Lin, Rui-Qi Jian +170 more
2020Cell407 citations Open access
Semantic Scholar
A novel method for accurate operon predictions in all sequenced prokaryotes
M. Price, Katherine H. Huang, E. Alm, A. Arkin
2005Nucleic Acids Research397 citations Open access
Semantic Scholar
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments
M. Sullivan, Katherine H. Huang, J. Ignacio-Espinoza, A. Berlin +14 more
2010Environmental Microbiology341 citations Open access
Semantic Scholar
Catalytic promiscuity in the biosynthesis of cyclic peptide secondary metabolites in planktonic marine cyanobacteria
Bo Li, D. Sher, Libusha Kelly, Yanxiang Shi +6 more
2010Proceedings of the National Academy of Sciences of the United States of America263 citations Open access
Semantic Scholar
The impact of rare variation on gene expression across tissues
Xin Li, Yungil Kim, Emily K. Tsang, Joe R. Davis +71 more
2016Nature253 citations Open access
Semantic Scholar
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
G. Giannoukos, Dawn M. Ciulla, Katherine H. Huang, B. Haas +9 more
2012Genome Biology240 citations Open access
Semantic Scholar
The Evolution of Two-Component Systems in Bacteria Reveals Different Strategies for Niche Adaptation
E. Alm, Katherine H. Huang, A. Arkin
2006PLoS Comput. Biol.218 citations Open access
Semantic Scholar
Transmission of human-associated microbiota along family and social networks
I. Brito, Thomas Gurry, Shi-Jie Zhao, Katherine H. Huang +7 more
2019Nature Microbiology200 citations Open access
Semantic Scholar
Salt Stress in Desulfovibrio vulgaris Hildenborough: an Integrated Genomics Approach
A. Mukhopadhyay, Zhi-Li He, E. Alm, A. Arkin +20 more
2005Journal of Bacteriology187 citations
Semantic Scholar
Operon formation is driven by co-regulation and not by horizontal gene transfer.
M. Price, Katherine H. Huang, A. Arkin, E. Alm
2005Genome Research175 citations Open access
Semantic Scholar
Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning
B. Cleary, I. Brito, Katherine H. Huang, D. Gevers +3 more
2015Nature Biotechnology145 citations Open access
Semantic Scholar
Energetic Consequences of Nitrite Stress in Desulfovibrio vulgaris Hildenborough, Inferred from Global Transcriptional Analysis
Qiang He, Katherine H. Huang, Zhi-Li He, E. Alm +5 more
2006Applied and Environmental Microbiology132 citations Open access
Semantic Scholar
Global Analysis of Heat Shock Response in Desulfovibrio vulgaris Hildenborough
S. Chhabra, Qiang He, Katherine H. Huang, Sara P. Gaucher +8 more
2006Journal of Bacteriology130 citations Open access
Semantic Scholar
Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability
A. Thompson, Katherine H. Huang, M. Saito, S. Chisholm
2011The ISME Journal124 citations Open access
Semantic Scholar
Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis
R. Malmstrom, S. Rodrigue, Katherine H. Huang, Libusha Kelly +6 more
2012The ISME Journal114 citations Open access
Semantic Scholar
Analysis of a Ferric Uptake Regulator (Fur) Mutant of Desulfovibrio vulgaris Hildenborough
K. Bender, H. Yen, Christopher L. Hemme, Zamin-K. Yang +8 more
2007Applied and Environmental Microbiology87 citations Open access
Semantic Scholar
Transcriptome Profiling of Shewanella oneidensis Gene Expression following Exposure to Acidic and Alkaline pH
A. Leaphart, Dorothea K. Thompson, Katherine H. Huang, E. Alm +8 more
2006Journal of Bacteriology78 citations Open access
Semantic Scholar
MetaRef: a pan-genomic database for comparative and community microbial genomics
Katherine H. Huang, Arthur Brady, Anup A. Mahurkar, O. White +3 more
2013Nucleic Acids Res.76 citations Open access
Semantic Scholar
Response of Desulfovibrio vulgaris to Alkaline Stress
S. Stolyar, Qiang He, marcin p. joachimiak, Zhi-Li He +10 more
2007Journal of Bacteriology73 citations Open access
Semantic Scholar
Cellular Response of Shewanella oneidensis to Strontium Stress
S. Brown, Madhavi Z. Martin, S. Deshpande, S. Seal +10 more
2006Applied and Environmental Microbiology56 citations Open access
Semantic Scholar
Global Transcriptional, Physiological, and Metabolite Analyses of the Responses of Desulfovibrio vulgaris Hildenborough to Salt Adaptation
Zhi-Li He, Ai-Fen Zhou, E. Baidoo, Qiang He +14 more
2009Applied and Environmental Microbiology53 citations Open access
Semantic Scholar
Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent
Libusha Kelly, Huiming Ding, Katherine H. Huang, M. Osburne +1 more
2013The ISME Journal47 citations Open access
Semantic Scholar
ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage
Libusha Kelly, Katherine H. Huang, Huiming Ding, S. Chisholm
2011Nucleic Acids Res.41 citations Open access
Semantic Scholar
Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent
Libusha Kelly, Huiming Ding, Katherine H. Huang, M. Osburne +1 more
2013The ISME Journal37 citations Open access
Semantic Scholar
Tracer Dynamics in a Lattice-Automaton Model of Bioturbation
D. Reed, Katherine H. Huang, B. Boudreau, F. Meysman
200534 citations
Semantic Scholar
UV hyper-resistance in Prochlorococcus MED4 results from a single base pair deletion just upstream of an operon encoding nudix hydrolase and photolyase
M. Osburne, Brianne M Holmbeck, J. Frias-Lopez, R. Steen +6 more
2010Environmental Microbiology30 citations Open access
Semantic Scholar
Simulated fiddler-crab sediment mixing
Katherine H. Huang, B. Boudreau, D. Reed
200715 citations
Semantic Scholar
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
G. Giannoukos, Dawn M. Ciulla, Katherine H. Huang, B. Haas +9 more
2012Genome Biology11 citations Open access
Semantic Scholar
Transient tracer dynamics in a lattice-automaton model of bioturbation
D. Reed, B. Boudreau, Katherine H. Huang
200710 citations Open access
Semantic Scholar
Geochemical analysis of thermal fluids from southern Mount Meager, British Columbia, Canada
Katherine H. Huang
20193 citations
Semantic Scholar
Corrigendum: Mobile genes in the human microbiome are structured from global to individual scales
I. Brito, S. Yilmaz, Katherine H. Huang, L. Xu +12 more
2017Nature3 citations Open access
Semantic Scholar
Corrigendum: Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78
Diego A. Martinez, L. Larrondo, N. Putnam, M. D. Sollewijn Gelpke +11 more
2004Nature Biotechnology3 citations Open access
Semantic Scholar
Corrigendum: Intellectual property—the dispute between research institutions and voluntary health agencies
Diego A. Martinez, L. Larrondo, N. Putnam, M. D. Sollewijn Gelpke +11 more
2004Nature Biotechnology3 citations Open access
Semantic Scholar
Title : Transcriptome response of high-and low-light adapted Prochlorococcus strains to changing iron availability Running title : Prochlorococcus response to iron stress 5 10 Contributors :
A. Thompson, Katherine H. Huang, M. Saito, S. Chisholm
20111 citations
Semantic Scholar
Salt stress in Desulfovibrio vulgaris Hildenborough: An integrated genomics 1 approach.
A. Mukhopadhyay, Zhi-Li He, E. Alm, A. Arkin +22 more
20100 citations
Semantic Scholar
Microbial Ecology , Proteogenomics , and Computational Optima 1 Flux Balance Based Whole-Cell Modeling of the Marine Cyanobacterium Prochlorococcus
E. Alm, I. Dubchak, M. Gelfand, Katherine H. Huang +5 more
20100 citations
Semantic Scholar
Large Lineage-Specific Gene Expansions are Driven by Moble Genetic Elements
Katherine H. Huang
20090 citations
Semantic Scholar
Large Lineage-Specific Expansions Are Driven By Mobile Genetic Elements
Katherine H. Huang
20080 citations
Semantic Scholar
Global Transcriptional and Metabolite Analysis of Desulfovibrio vulgaris Hildenborough Responses to Long-Term Exposure to Elevated NaCl
Zhi-Li He, E. Baidoo, Ai-Fen Zhou, Qiang He +12 more
20080 citations
Semantic Scholar
The Virtual Institute of Microbial Stress and Survival VIMSS : ESPP Overview
Carl B. Abulencia, Gary, Anderson, M. Auer +67 more
20080 citations
Semantic Scholar
GTL PI meeting 2009 Abstracts-Systems Environmental Microbiology
Carl B. Abulencia, Gary, Anderson, M. Auer +67 more
20080 citations
Semantic Scholar

Frequent co-authors

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E. Alm×19
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A. Arkin×14
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D. Gevers×11
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S. Chisholm×11
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Libusha Kelly×8

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Qiang He — researcher profile on SciRah

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marcin p. joachimiak×6

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