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J. Ignacio-Espinoza · SciRah

Researcher profile · Semantic Scholar

J. Ignacio-Espinoza

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J. Ignacio-Espinoza — researcher profile on SciRah

h-index: 14
Works: 29
Citations: 2,172

Most-cited papers

Patterns and ecological drivers of ocean viral communities
J. Brum, J. Ignacio-Espinoza, S. Roux, G. Doulcier +27 more
2015Science696 citations Open access
Semantic Scholar
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments
M. Sullivan, Katherine H. Huang, J. Ignacio-Espinoza, A. Berlin +14 more
2010Environmental Microbiology341 citations Open access
Semantic Scholar
Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
L. Deng, J. Ignacio-Espinoza, A. Gregory, B. Poulos +3 more
2014Nature194 citations
Semantic Scholar
A network-based integrated framework for predicting virus–prokaryote interactions
Weili Wang, Jie Jessie Ren, Ku-Jin Tang, E. Dart +5 more
2020NAR Genomics and Bioinformatics126 citations Open access
Semantic Scholar
Phylogenomics of T4 cyanophages: lateral gene transfer in the 'core' and origins of host genes.
J. Ignacio-Espinoza, Matthew B. Sullivan
2012Environmental Microbiology123 citations
Semantic Scholar
Sequencing platform and library preparation choices impact viral metagenomes
S. Solonenko, J. Ignacio-Espinoza, A. Alberti, C. Cruaud +5 more
2013BMC Genomics104 citations Open access
Semantic Scholar
Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer
A. Gregory, S. Solonenko, J. Ignacio-Espinoza, K. Labutti +9 more
2016BMC Genomics98 citations Open access
Semantic Scholar
Long-term stability and Red Queen-like strain dynamics in marine viruses
J. Ignacio-Espinoza, N. Ahlgren, J. Fuhrman
2019Nature Microbiology94 citations
Semantic Scholar
Illuminating structural proteins in viral “dark matter” with metaproteomics
J. Brum, J. Ignacio-Espinoza, Eun-Hae Kim, G. Trubl +5 more
2016Proceedings of the National Academy of Sciences of the United States of America83 citations Open access
Semantic Scholar
Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes
Ella T. Sieradzki, J. Ignacio-Espinoza, D. Needham, E. Fichot +1 more
2019Nature Communications78 citations Open access
Semantic Scholar
The global virome: not as big as we thought?
J. Ignacio-Espinoza, S. Solonenko, M. Sullivan
2013Current Opinion in Virology74 citations
Semantic Scholar
Benchmarking microbial growth rate predictions from metagenomes
Andrew M. Long, Shengwei Hou, J. Ignacio-Espinoza, J. Fuhrman
2020The ISME Journal72 citations Open access
Semantic Scholar
Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov.,
Miguel A Martinez, B. Woodcroft, J. Ignacio-Espinoza, A. Zayed +13 more
2019Systematic and Applied Microbiology30 citations Open access
Semantic Scholar
Life-Style and Genome Structure of Marine Pseudoalteromonas Siphovirus B8b Isolated from the Northwestern Mediterranean Sea
Elena Lara, Karin Holmfeldt, N. Solonenko, E. Sà +6 more
2015PLoS ONE15 citations Open access
Semantic Scholar
Ribosome-linked mRNA-rRNA chimeras reveal active novel virus host associations
J. Ignacio-Espinoza, S. Laperriere, Yi-Chun Yeh, J. Weissman +3 more
2020bioRxiv14 citations Open access
Semantic Scholar
Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer
A. Gregory, S. Solonenko, J. Ignacio-Espinoza, K. Labutti +9 more
2016BMC Genomics12 citations Open access
Semantic Scholar
Closing the gaps on the viral photosystem‐I psaDCAB gene organization
S. Roitman, J. Flores-Uribe, A. Philosof, B. Knowles +8 more
2015Environmental Microbiology9 citations Open access
Semantic Scholar
A network-based integrated framework for predicting virus-host interactions
Weili Wang, J. Ren, Ku-Jin Tang, E. Dart +5 more
2018bioRxiv4 citations Open access
Semantic Scholar
A non-tailed twist in the viral tale
J. Ignacio-Espinoza, J. Fuhrman
2018Nature4 citations Open access
Semantic Scholar
Benchmarking metagenomic marine microbial growth prediction from codon usage bias and peak-to-trough ratios
Andrew M. Long, Shengwei Hou, J. Ignacio-Espinoza, J. Fuhrman
2019bioRxiv3 citations Open access
Semantic Scholar
Phylogenetic proximity is a key driver of temporal succession of marine giant viruses in a five-year metagenomic time-series
Sarah M. Laperriere, Benjamin Minch, J. L. Weissman, Shengwei Hou +5 more
2025ISME Communications2 citations
Semantic Scholar
Phylogenetic proximity drives temporal succession of marine giant viruses in a five-year metagenomic time-series
S. Laperriere, Benjamin Minch, J. Weissman, Shengwei Hou +5 more
2024bioRxiv1 citations Open access
Semantic Scholar
Considering microRNAs as measures of extrinsic domains of risk in the context of underlying genetic characteristics: type 2 diabetes as an exemplar
Benjamin M. Stroebel, A. Jimenez, Karla J. Lindquist, D. Torgerson +3 more
2026Frontiers in Genetics0 citations Open access
Semantic Scholar
Complete genome sequences of three co-occurring Pseudomonas isolates from California Botanic Garden topsoil
Chun-Yu Chen, Xiao-Kuan Wang, Yan Yan, Rafael Escobar +1 more
2026Microbiology Resource Announcements0 citations Open access
Semantic Scholar
In Situ Bacterioplankton Growth Partitioning by High‐Resolution Metatranscriptomics
J. Ignacio-Espinoza, Yuxuan Zou, Andrew M. Long, Shengwei Hou +2 more
2026Environmental Microbiology Reports0 citations Open access
Semantic Scholar
Local monitoring of SARS-CoV-2 variants in two large California counties in 2021
N. Kojima, E. Khorosheva, L. Lopez, Mikhail H. Hanewich-Hollatz +13 more
2021Scientific Reports0 citations Open access
Semantic Scholar
Peer Review #1 of "Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils (v0.2)"
G. Trubl, S. Roux, N. Solonenko, Yueh-Fen Li +356 more
20190 citations Open access
Semantic Scholar
Lawrence Berkeley National Laboratory Recent Work Title Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer Permalink
A. Gregory, S. Solonenko, J. Ignacio-Espinoza, K. Labutti +9 more
20160 citations
Semantic Scholar
Pseudoalteromonas phages: phage-host interactions, comparative genomics and biogeography
Elena Lara, E. Sà, G. Salazar, Pilar Sánchez +6 more
20150 citations
Semantic Scholar

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