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J. Goodrich · SciRah

Researcher profile · Semantic Scholar

J. Goodrich

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J. Goodrich — researcher profile on SciRah

h-index: 26
Works: 44
Citations: 51K

Most-cited papers

QIIME allows analysis of high-throughput community sequencing data
J. Caporaso, J. Kuczynski, J. Stombaugh, K. Bittinger +23 more
2010Nature Methods33K citations Open access
Semantic Scholar
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D. McDonald, M. Price, J. Goodrich, Eric P. Nawrocki +5 more
2011The ISME Journal4,773 citations Open access
Semantic Scholar
Human genetics shape the gut microbiome
J. Goodrich, Jillian L. Waters, Angela C. Poole, Jessica L. Sutter +9 more
2014Cell2,812 citations Open access
Semantic Scholar
Host remodeling of the gut microbiome and metabolic changes during pregnancy
O. Koren, J. Goodrich, Tyler C. Cullender, A. Spor +10 more
2012Cell2,069 citations Open access
Semantic Scholar
Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome
B. Chassaing, O. Koren, J. Goodrich, Angela C. Poole +3 more
2015Nature1,845 citations Open access
Semantic Scholar
Genetic determinants of the gut microbiome in UK Twins
J. Goodrich, Emily R. Davenport, M. Beaumont, M. Jackson +6 more
2016Cell Host and Microbe972 citations Open access
Semantic Scholar
Proton pump inhibitors alter the composition of the gut microbiota
M. Jackson, J. Goodrich, Maria-Emanuela Maxan, D. Freedberg +8 more
2015Gut845 citations Open access
Semantic Scholar
Host genetic variation impacts microbiome composition across human body sites
R. Blekhman, J. Goodrich, Katherine H. Huang, Qi Sun +7 more
2015Genome Biology711 citations Open access
Semantic Scholar
Conducting a Microbiome Study
J. Goodrich, S. C. Di Rienzi, Angela C. Poole, O. Koren +4 more
2014Cell651 citations Open access
Semantic Scholar
Selection on soil microbiomes reveals reproducible impacts on plant function
K. Panke-Buisse, Angela C. Poole, J. Goodrich, R. Ley +1 more
2014The ISME Journal585 citations Open access
Semantic Scholar
Transient Inability to manage Proteobacteria promotes chronic gut inflammation in TLR5-deficient mice
F. Carvalho, O. Koren, J. Goodrich, M. Johansson +14 more
2012Cell Host and Microbe498 citations Open access
Semantic Scholar
The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria
S. C. Di Rienzi, Itai Sharon, K. Wrighton, O. Koren +7 more
2013eLife370 citations Open access
Semantic Scholar
Reduced diversity and altered composition of the gut microbiome in individuals with myalgic encephalomyelitis/chronic fatigue syndrome
L. Giloteaux, J. Goodrich, W. Walters, S. Levine +2 more
2016Microbiome312 citations Open access
Semantic Scholar
The relationship between the human genome and microbiome comes into view
J. Goodrich, Emily R. Davenport, A. Clark, R. Ley
2017Annual Review of Genetics270 citations Open access
Semantic Scholar
Cross-species comparisons of host genetic associations with the microbiome
J. Goodrich, Emily R. Davenport, Jillian L. Waters, A. Clark +1 more
2016Science270 citations Open access
Semantic Scholar
Heritable components of the human fecal microbiome are associated with visceral fat
M. Beaumont, J. Goodrich, M. Jackson, Idil Yet +11 more
2016Genome Biology234 citations Open access
Semantic Scholar
Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat
J. Harris, J. Caporaso, Jeffrey J. Walker, J. Spear +10 more
2012The ISME Journal225 citations Open access
Semantic Scholar
Virome diversity correlates with intestinal microbiome diversity in adult monozygotic twins
J. L. Moreno-Gallego, Shao-Pei Chou, S. C. Di Rienzi, J. Goodrich +6 more
2019Cell Host and Microbe190 citations Open access
Semantic Scholar
Gut-Microbiota-Metabolite Axis in Early Renal Function Decline
C. Barrios, M. Beaumont, T. Pallister, J. Villar +7 more
2015PLoS ONE161 citations Open access
Semantic Scholar
Human salivary amylase gene copy number impacts oral and gut microbiomes
Angela C. Poole, J. Goodrich, Nicholas D. Youngblut, G. Luque +10 more
2018bioRxiv122 citations Open access
Semantic Scholar
Interactions between the Gut Microbiome and Mucosal Immunoglobulins A, M, and G in the Developing Infant Gut
A. Janzon, J. Goodrich, O. Koren, Jillian L. Waters +1 more
2019mSystems67 citations Open access
Semantic Scholar
ABO antigen and secretor statuses are not associated with gut microbiota composition in 1,500 twins
Emily R. Davenport, J. Goodrich, J. Bell, T. Spector +2 more
2016BMC Genomics63 citations Open access
Semantic Scholar
Crossover Control Study of the Effect of Personal Care Products Containing Triclosan on the Microbiome
Angela C. Poole, Lauren Pischel, Catherine Ley, G. Suh +4 more
2016Msphere57 citations Open access
Semantic Scholar
Epithelial Sel1L is required for the maintenance of intestinal homeostasis
Sheng-Yi Sun, R. Lourie, Sara B. Cohen, Ye-Wei Ji +9 more
2016Molecular Biology of the Cell53 citations Open access
Semantic Scholar
Diet-induced alterations in gut microflora contribute to lethal pulmonary damage in TLR2/TLR4 deficient mice
Ye-Wei Ji, Sheng-Yi Sun, J. Goodrich, Hana Kim +4 more
2014Cell Reports43 citations Open access
Semantic Scholar
Corrigendum: Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome
B. Chassaing, O. Koren, J. Goodrich, Angela C. Poole +3 more
2016Nature28 citations Open access
Semantic Scholar
Ensemble dispatching on an IBM Blue Gene/L for a bioinformatics knowledge environment
Paul Marshall, M. Woitaszek, H. Tufo, R. Knight +2 more
2009Many-Task Computing on Grids and Supercomputers5 citations
Semantic Scholar
High-resolution QTL mapping with Diversity Outbred mice identifies genetic variants that impact gut microbiome composition
Florencia Schlamp, David Zhang, J. F. Beltrán, Elissa J. Cosgrove +7 more
2019bioRxiv4 citations Open access
Semantic Scholar
The virome in adult monozygotic twins with concordant or discordant gut microbiomes
J. L. Moreno-Gallego, Shao-Pei Chou, S. C. Di Rienzi, J. Goodrich +6 more
2019bioRxiv2 citations Open access
Semantic Scholar
Phylogenetic pipeline for the detection of horizontal gene transfer
J. Goodrich
20101 citations
Semantic Scholar
Peer Review #1 of "Tuber melanosporum shapes nirS-type denitrifying and ammonia-oxidizing bacterial communities in Carya illinoinensis ectomycorrhizosphere soils (v0.2)"
Z. Kang, J. Zou, Yue Huang, Xiao-Ping Zhang +270 more
20200 citations Open access
Semantic Scholar
Peer Review #2 of "The fungal community in non-rhizosphere soil of Panax ginseng are driven by different cultivation modes and increased cultivation periods (v0.1)"
Yu Bao, Bao Qi, Wei Huang, Bao Liu +154 more
20200 citations Open access
Semantic Scholar
Peer Review #3 of "The gut microbiota in the common kestrel (Falco tinnunculus): a report from the Beijing Raptor Rescue Center (v0.2)"
Y. Guan, Hong-Fang Wang, Yi-Nan Gong, Jian-Ping Ge +366 more
20200 citations Open access
Semantic Scholar
Peer Review #2 of "Long-term continuously monocropped peanut significantly changed the abundance and composition of soil bacterial communities (v0.1)"
Ming-Na Chen, Hu Liu, Shan-Lin Yu, Mian Wang +210 more
20200 citations Open access
Semantic Scholar
Peer Review #2 of "Effect of dietary concentrate to forage ratio on growth performance, rumen fermentation and bacterial diversity of Tibetan sheep under barn feeding on the Qinghai-Tibetan plateau (v0.1)"
Hong-Jin Liu, Shi-Xiao Xu, Li Ma, Xue-Ping Han +263 more
20190 citations Open access
Semantic Scholar
Peer Review #1 of "Bacterial and archaeal spatial distribution and its environmental drivers in an extremely haloalkaline soil at the landscape scale (v0.1)"
M. A. Martínez-Olivas, N. Jiménez-Bueno, J. A. Hernández-García, Carmine Fusaro +340 more
20190 citations Open access
Semantic Scholar
Peer Review #3 of "Compositional and predicted functional analysis of the gut microbiota of Radix auricularia (Linnaeus) via high-throughput Illumina sequencing (v0.1)"
Zong-Fu Hu, Xi Chen, Jie Chang, Jian-Hua Yu +260 more
20180 citations Open access
Semantic Scholar
Peer Review #3 of "Non-biological synthetic spike-in controls and the AMPtk software pipeline improve mycobiome data (v0.1)"
J. Palmer, M. Jusino, M. Banik, Daniel L. Lindner +394 more
20180 citations Open access
Semantic Scholar
Peer Review #2 of "Molecular analysis of oral microflora in patients with primary Sjögren’s syndrome by using high-throughput sequencing (v0.1)"
Zhi-Fang Zhou, Guang-Hui Ling, Ning Ding, Z. Xun +342 more
20180 citations Open access
Semantic Scholar
Reply to “Triclocarban and Health: the Jury Is Still Out”
Lauren Pischel, Angela C. Poole, Catherine Ley, G. Suh +4 more
2016Msphere0 citations Open access
Semantic Scholar
Investigating The Impact Of Host Genetic Variation On The Human Gut Microbiota Using Twin Pairs
J. Goodrich
20160 citations
Semantic Scholar
Modulation du stockage des graisses chez un sujet par modification des niveaux de population de christensenellaceae dans le tractus gastro-intestinal
Ruth E. Ley, J. Goodrich, Jillian L. Waters
20150 citations
Semantic Scholar
Author response: The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria
S. C. Di Rienzi, Itai Sharon, K. Wrighton, O. Koren +7 more
20130 citations Open access
Semantic Scholar
Intensity normalization improves color calling in SOLiD sequencing
J. Gregory, J. Kuczynski, K. Bittinger, J. Goodrich +2 more
20100 citations
Semantic Scholar

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