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Sahar Abubucker · SciRah

Researcher profile · Semantic Scholar

Sahar Abubucker

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Sahar Abubucker — researcher profile on SciRah

h-index: 28
Works: 49
Citations: 19K

Most-cited papers

Structure, Function and Diversity of the Healthy Human Microbiome
C. Huttenhower, D. Gevers, R. Knight, Sahar Abubucker +244 more
2012Nature11K citations Open access
Semantic Scholar
A framework for human microbiome research
B. Methé, K. Nelson, Mihai Pop, H. Creasy +244 more
2012Nature2,439 citations Open access
Semantic Scholar
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome
Sahar Abubucker, N. Segata, Johannes Goll, Alyxandria M. Schubert +13 more
2012PLoS Comput. Biol.1,011 citations Open access
Semantic Scholar
A computational framework to explore large-scale biosynthetic diversity
J. Navarro-Muñoz, Nelly Sélem-Mojica, M. Mullowney, S. Kautsar +16 more
2019Nature Chemical Biology874 citations Open access
Semantic Scholar
Indoleacrylic acid produced by commensal Peptostreptococcus species suppresses inflammation
M. Wlodarska, C. Luo, R. Kolde, Eva d’Hennezel +18 more
2017Cell Host and Microbe799 citations Open access
Semantic Scholar
The draft genome of the parasitic nematode Trichinella spiralis
M. Mitreva, D. Jasmer, D. Zarlenga, Zhengyuan O. Wang +17 more
2011Nature Genetics338 citations Open access
Semantic Scholar
Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment
Y. Nobel, L. Cox, Francis F. Kirigin, N. Bokulich +16 more
2015Nature Communications309 citations Open access
Semantic Scholar
Total Lipopolysaccharide from the Human Gut Microbiome Silences Toll-Like Receptor Signaling
Eva d’Hennezel, Sahar Abubucker, Leon O. Murphy, T. W. Cullen
2017mSystems288 citations Open access
Semantic Scholar
Sepsis from the gut: the enteric habitat of bacteria that cause late-onset neonatal bloodstream infections.
Mike A. Carl, I. Ndao, A. Springman, S. Manning +15 more
2014Clinical Infectious Diseases211 citations Open access
Semantic Scholar
Genome of the human hookworm Necator americanus
Yat T. Tang, Xin Gao, B. Rosa, Sahar Abubucker +25 more
2014Nature Genetics197 citations Open access
Semantic Scholar
Widespread colonization of the lung by Tropheryma whipplei in HIV infection.
C. Lozupone, A. Cota-Gomez, B. Palmer, Derek J. Linderman +25 more
2013American Journal of Respiratory and Critical Care Medicine195 citations Open access
Semantic Scholar
The Prevalence of Species and Strains in the Human Microbiome: A Resource for Experimental Efforts
Laurens Kraal, Sahar Abubucker, K. Kota, M. Fischbach +1 more
2014PLoS ONE111 citations Open access
Semantic Scholar
Discovery of Anthelmintic Drug Targets and Drugs Using Chokepoints in Nematode Metabolic Pathways
Christina M. Taylor, Qi Wang, B. Rosa, S. Huang +5 more
2013PLoS Pathogens99 citations Open access
Semantic Scholar
A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing
C. Cantacessi, A. Jex, R. Hall, N. Young +8 more
2010Nucleic Acids Research67 citations Open access
Semantic Scholar
Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation
Zhengyuan O. Wang, Sahar Abubucker, John C. Martin, Richard K. Wilson +2 more
2010BMC Genomics60 citations Open access
Semantic Scholar
Mining novel effector proteins from the esophageal gland cells of Meloidogyne incognita
W. Rutter, T. Hewezi, Sahar Abubucker, T. Maier +4 more
2014Molecular Plant-Microbe Interactions52 citations Open access
Semantic Scholar
A computational framework for systematic exploration of biosynthetic diversity from large-scale genomic data
J. Navarro-Muñoz, Nelly Sélem-Mojica, M. Mullowney, S. Kautsar +15 more
2018bioRxiv51 citations
Semantic Scholar
Nematode.net update 2011: addition of data sets and tools featuring next-generation sequencing data
John C. Martin, Sahar Abubucker, Esley Heizer, Christina M. Taylor +1 more
2011Nucleic Acids Res.46 citations Open access
Semantic Scholar
Intestinal Transcriptomes of Nematodes: Comparison of the Parasites Ascaris suum and Haemonchus contortus with the Free-living Caenorhabditis elegans
Yong Yin, John C. Martin, Sahar Abubucker, A. Scott +4 more
2008PLoS Neglected Tropical Diseases46 citations Open access
Semantic Scholar
The canine hookworm genome: analysis and classification of Ancylostoma caninum survey sequences.
Sahar Abubucker, John C. Martin, Yong Yin, L. Fulton +7 more
2008Molecular and biochemical parasitology (Print)42 citations Open access
Semantic Scholar
Transcripts analysis of the entomopathogenic nematode Steinernema carpocapsae induced in vitro with insect haemolymph
You-Jin Hao, R. Montiel, Sahar Abubucker, M. Mitreva +1 more
2009Molecular and biochemical parasitology (Print)41 citations Open access
Semantic Scholar
Using Existing Drugs as Leads for Broad Spectrum Anthelmintics Targeting Protein Kinases
Christina M. Taylor, John C. Martin, R. Rao, Kerrie Powell +2 more
2013PLoS Pathogens40 citations Open access
Semantic Scholar
Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics
John C. Martin, Sahar Abubucker, T. Wylie, Yong Yin +2 more
2008Nucleic Acids Res.40 citations Open access
Semantic Scholar
Precise Dissection of an Escherichia coli O157:H7 Outbreak by Single Nucleotide Polymorphism Analysis
G. Turabelidze, S. Lawrence, Hong-Yu Gao, E. Sodergren +7 more
2013Journal of Clinical Microbiology37 citations Open access
Semantic Scholar
mBLAST: Keeping up with the sequencing explosion for (meta)genome analysis
Curtis Davis, K. Kota, Venkat Baldhandapani, Wei Gong +8 more
2013Journal of Data Mining in Genomics & Proteomics31 citations Open access
Semantic Scholar
Systematic analysis of insertions and deletions specific to nematode proteins and their proposed functional and evolutionary relevance
Zhengyuan O. Wang, John C. Martin, Sahar Abubucker, Yong Yin +2 more
2009BMC Evolutionary Biology31 citations Open access
Semantic Scholar
Gender-Associated Genes in Filarial Nematodes Are Important for Reproduction and Potential Intervention Targets
B. Li, Amy C. Rush, Daojun Jiang, M. Mitreva +2 more
2011PLoS Neglected Tropical Diseases30 citations Open access
Semantic Scholar
NemaPath: online exploration of KEGG-based metabolic pathways for nematodes
T. Wylie, John C. Martin, Sahar Abubucker, Yong Yin +4 more
2008BMC Genomics29 citations Open access
Semantic Scholar
Targeting Protein-Protein Interactions for Parasite Control
Christina M. Taylor, K. Fischer, Sahar Abubucker, Zhengyuan O. Wang +7 more
2011PLoS ONE26 citations Open access
Semantic Scholar
Effects of Doxycycline on gene expression in Wolbachia and Brugia malayi adult female worms in vivo
R. Rao, Yue-Fang Huang, Sahar Abubucker, Michael E. Heinz +3 more
2012Journal of Biomedical Sciences25 citations Open access
Semantic Scholar
A nuclear single-nucleotide polymorphism (SNP) potentially useful for the separation of Rhodnius prolixus from members of the Rhodnius robustus cryptic species complex (Hemiptera: Reduviidae)
M. Pavan, R. Mesquita, G. Lawrence, C. Lazoski +5 more
2012Infection, Genetics and Evolution24 citations Open access
Semantic Scholar
Transcriptomic and Proteomic Analyses of a Wolbachia-Free Filarial Parasite Provide Evidence of Trans-Kingdom Horizontal Gene Transfer
Samantha N. McNulty, Sahar Abubucker, Gabriel M. Simon, M. Mitreva +6 more
2012PLoS ONE22 citations Open access
Semantic Scholar
Identification of Hookworm DAF-16/FOXO Response Elements and Direct Gene Targets
Xin Gao, Zhengyuan O. Wang, John C. Martin, Sahar Abubucker +3 more
2010PLoS ONE18 citations Open access
Semantic Scholar
HelmCoP: An Online Resource for Helminth Functional Genomics and Drug and Vaccine Targets Prioritization
Sahar Abubucker, John C. Martin, Christina M. Taylor, M. Mitreva
2011PLoS ONE17 citations Open access
Semantic Scholar
The transcriptomes of the cattle parasitic nematode Ostertagia ostartagi
Sahar Abubucker, D. Zarlenga, John C. Martin, Yong Yin +5 more
2009Veterinary parasitology15 citations Open access
Semantic Scholar
Molecular determinants archetypical to the phylum Nematoda
Yong Yin, John C. Martin, Sahar Abubucker, Zhengyuan O. Wang +5 more
2009BMC Genomics14 citations Open access
Semantic Scholar
Gene expression analysis distinguishes tissue specific and gender related functions among adult Ascaris suum tissues
Zhengyuan O. Wang, Xin Gao, John C. Martin, Yong Yin +7 more
2013Zeitschrift für Induktive Abstammungs- und Vererbungslehre13 citations Open access
Semantic Scholar
Exploring metazoan evolution through dynamic and holistic changes in protein families and domains
Zhengyuan O. Wang, D. Zarlenga, John C. Martin, Sahar Abubucker +1 more
2012BMC Evolutionary Biology13 citations Open access
Semantic Scholar
Identification and characterization of alternative splicing in parasitic nematode transcriptomes
Sahar Abubucker, Samantha N. McNulty, B. Rosa, M. Mitreva
2014Parasites & Vectors12 citations Open access
Semantic Scholar
Tombusvirus p19 Captures RNase III-Cleaved Double-Stranded RNAs Formed by Overlapping Sense and Antisense Transcripts in Escherichia coli
Linfeng Huang, P. Deighan, Jing-Min Jin, Ying-Xue Li +9 more
2020mBio11 citations Open access
Semantic Scholar
A Case Study for Large-Scale Human Microbiome Analysis Using JCVI’s Metagenomics Reports (METAREP)
Johannes Goll, Mathangi Thiagarajan, Sahar Abubucker, C. Huttenhower +2 more
2012PLoS ONE11 citations Open access
Semantic Scholar
138-LB: Digital-Tool-Supported Basal Insulin (BI) Titration: Real-World Effectiveness of My Dose Coach in India
K. Modi, S. Jha, Manju Panda, V. Raskar +5 more
2019Diabetes9 citations
Semantic Scholar
Durable Multiplex Epigenetic Editing for Generation of Allogeneic CAR T without Chromosomal Rearrangements
Jamie L. Schafer, Justin D. Trombley, Benjamin Hallisey, Kunza Ahmad +15 more
2023Blood4 citations Open access
Semantic Scholar
Microbial community function and biomarker discovery in the human microbiome
N. Segata, Sahar Abubucker, Johannes Goll, Alyxandria M. Schubert +15 more
2011Genome Biology4 citations Open access
Semantic Scholar
Identification and characterization of alternative splicing in parasitic nematode transcriptomes
Sahar Abubucker, Samantha N. McNulty, B. Rosa, M. Mitreva
2014Parasites & Vectors1 citations Open access
Semantic Scholar
Tombusvirus p19 captures RNase III-cleaved double-stranded RNAs formed by overlapping sense and antisense transcripts in E. coli
Linfeng Huang, P. Deighan, Jing-Min Jin, Ying-Xue Li +8 more
2019bioRxiv0 citations Open access
Semantic Scholar
GOAL: identify archaeal core gene set to be used for blast-based estimate of completeness of draft archael genomes
Sahar Abubucker, M. Mitreva
20080 citations
Semantic Scholar
Machine Learning Approaches to siRNA Efficacy Prediction
Sahar Abubucker
20050 citations
Semantic Scholar
Digital Commons@Becker
M. Mitreva, G. Weinstock, Curtis W. Davis, K. Kota +8 more
0 citations
Semantic Scholar

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