E. Alm

Most-cited papers

1. Environmental stress mediates groundwater microbial community assembly

   D. Ning, Ya-Jiao Wang, Yupeng Fan, Jian-Jun Wang +17 more

   2024Nature Microbiology222 citations Open access

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2. Orthogonal dietary niche enables reversible engraftment of a gut bacterial commensal

   S. Kearney, S. Gibbons, Susan E. Erdman, E. Alm

   2018bioRxiv80 citations Open access

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3. Modest functional diversity decline and pronounced composition shifts of microbial communities in a mixed waste-contaminated aquifer

   Yupeng Fan, Dong-Yu Wang, Joy X. Yang, D. Ning +16 more

   2025Microbiome14 citations Open access

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4. CRISPR-Cas spacer acquisition is a rare event in human gut microbiome

   An-Ni Zhang, Jeffry M. Gaston, Pablo Cárdenas, Shi-Jie Zhao +2 more

   2024Cell Genomics11 citations Open access

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5. Fast and accurate variant identification tool for sequencing-based studies

   Jeffry M. Gaston, E. Alm, An-Ni Zhang

   2024BMC Biology5 citations Open access

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6. Global transcriptional, physiological and metabolite analyses of Desulfovibrio vulgaris Hildenborough responses to salt adaptation

   Zhi-Li He, Ai-Fen Zhou, E. Baidoo, Qiang He +14 more

   20105 citations

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7. X-Mapper: fast and accurate sequence alignment via gapped x-mers

   Jeffry M. Gaston, E. Alm, An-Ni Zhang

   2025Genome Biology4 citations Open access

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8. Modest functional diversity decline and pronounced composition shifts of microbial communities in a uranium-contaminated aquifer

   Yupeng Fan, Dong-Yu Wang, Joy X. Yang, D. Ning +16 more

   2024bioRxiv1 citations

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9. Author Correction: X-Mapper: fast and accurate sequence alignment via gapped x-mers

   Jeffry M. Gaston, E. Alm, An-Ni Zhang

   2025Genome Biology0 citations Open access

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10. Peer Review #3 of "The soil microbiomics of intact, degraded and partially-restored semi-arid succulent thicket (Albany Subtropical Thicket) (v0.2)"

    Micaela Schagen, Jason Bosch, Jenny Johnson, R. Duker +440 more

    20210 citations Open access

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11. Peer Review #2 of "Spatial and temporal dynamics of SAR11 marine bacteria across a nearshore to offshore transect in the tropical Pacific Ocean (v0.2)"

    Sarah J. Tucker, K. Freel, E. Monaghan, C. Sullivan +491 more

    20210 citations Open access

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12. Peer Review #1 of "The inconsistent microbiota of Budu, the Malaysian fermented anchovy sauce, revealed through 16S amplicon sequencing (v0.1)"

    Muhammad Zarul, Hanifah, Zoqratt Corresp, Han-Ming Gan +272 more

    20210 citations Open access

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13. Salt stress in Desulfovibrio vulgaris Hildenborough: An integrated genomics 1 approach.

    A. Mukhopadhyay, Zhi-Li He, E. Alm, A. Arkin +22 more

    20100 citations

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14. The Virtual Institute of Microbial Stress and Survival : An Overview of the Environmental Stress Pathway Project

    Carl B. Abulencia, E. Alm, G. Anderson, E. Baidoo +66 more

    20070 citations

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15. BSSD Metric

    Paul D. Adams, PDAdams, A. Arkin, N. Baliga +13 more

    0 citations

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