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Dorothea K. Thompson · SciRah

Researcher profile · Semantic Scholar

Dorothea K. Thompson

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Dorothea K. Thompson — researcher profile on SciRah

h-index: 30
Works: 65
Citations: 3,800

Most-cited papers

Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment
Li-You Wu, Dorothea K. Thompson, Guang-Shan Li, R. Hurt +2 more
2001Applied and Environmental Microbiology433 citations Open access
Semantic Scholar
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation
Yong-Qing Liu, Ji-Zhong Zhou, M. Omelchenko, A. Beliaev +11 more
2003Proceedings of the National Academy of Sciences of the United States of America396 citations Open access
Semantic Scholar
Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory
Feng Luo, Yun-Feng Yang, Jianxin Zhong, Haichun Gao +3 more
2007BMC Bioinformatics265 citations Open access
Semantic Scholar
Global Transcriptome Analysis of the Heat Shock Response of Shewanella oneidensis
Haichun Gao, Yue Wang, Xue-Duan Liu, Ting-Fen Yan +5 more
2004Journal of Bacteriology211 citations Open access
Semantic Scholar
Challenges in applying microarrays to environmental studies.
Ji-Zhong Zhou, Dorothea K. Thompson
2002Current Opinion in Biotechnology208 citations
Semantic Scholar
Molecular Dynamics of the Shewanella oneidensis Response to Chromate Stress*S
S. Brown, Melissa R. Thompson, N. Verberkmoes, K. Chourey +4 more
2006Molecular & Cellular Proteomics190 citations Open access
Semantic Scholar
Transcriptional and Proteomic Analysis of a Ferric Uptake Regulator (Fur) Mutant of Shewanella oneidensis: Possible Involvement of Fur in Energy Metabolism, Transcriptional Regulation, and Oxidative Stress
Dorothea K. Thompson, A. Beliaev, C. Giometti, S. Tollaksen +8 more
2002Applied and Environmental Microbiology182 citations Open access
Semantic Scholar
Arguing for Experimental “Facts” in Science
Dorothea K. Thompson
1993154 citations
Semantic Scholar
Transcriptomic and Proteomic Characterization of the Fur Modulon in the Metal-Reducing Bacterium Shewanella oneidensis
Xiu-Feng Wan, N. Verberkmoes, L. McCue, Dawn M Stanek +9 more
2004Journal of Bacteriology146 citations Open access
Semantic Scholar
Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications.
Li-You Wu, Dorothea K. Thompson, Xue-Duan Liu, M. Fields +3 more
2004Environmental Science and Technology129 citations
Semantic Scholar
Global Molecular and Morphological Effects of 24-Hour Chromium(VI) Exposure on Shewanella oneidensis MR-1
K. Chourey, Melissa R. Thompson, J. Morrell-Falvey, N. Verberkmoes +6 more
2006Applied and Environmental Microbiology110 citations Open access
Semantic Scholar
Gene and Protein Expression Profiles of Shewanella oneidensis during Anaerobic Growth with Different Electron Acceptors
A. Beliaev, Dorothea K. Thompson, Tripti Khare, Hanjo Lim +9 more
2002Omics104 citations
Semantic Scholar
Transcriptome Analysis of Shewanella oneidensis MR-1 in Response to Elevated Salt Conditions
Yong-Qing Liu, Wei-Min Gao, Yue Wang, Li-You Wu +7 more
2005Journal of Bacteriology95 citations Open access
Semantic Scholar
High-level chromate resistance in Arthrobacter sp. strain FB24 requires previously uncharacterized accessory genes
K. L. Henne, C. Nakatsu, Dorothea K. Thompson, A. Konopka
2009BMC Microbiology78 citations Open access
Semantic Scholar
Transcriptome Profiling of Shewanella oneidensis Gene Expression following Exposure to Acidic and Alkaline pH
A. Leaphart, Dorothea K. Thompson, Katherine H. Huang, E. Alm +8 more
2006Journal of Bacteriology78 citations Open access
Semantic Scholar
Global Transcriptome Analysis of the Cold Shock Response of Shewanellaoneidensis MR-1 and Mutational Analysis of Its ClassicalCold ShockProteins
Haichun Gao, Zamin-K. Yang, Li-You Wu, Dorothea K. Thompson +1 more
2006Journal of Bacteriology77 citations
Semantic Scholar
Microarray Transcription Profiling of a Shewanella oneidensis etrA Mutant
A. Beliaev, Dorothea K. Thompson, M. Fields, Li-You Wu +3 more
2002Journal of Bacteriology75 citations Open access
Semantic Scholar
Dosage-dependent proteome response of Shewanella oneidensis MR-1 to acute chromate challenge.
Melissa R. Thompson, N. Verberkmoes, K. Chourey, M. Shah +2 more
2007Journal of Proteome Research68 citations
Semantic Scholar
Proteomics reveals a core molecular response of Pseudomonas putida F1 to acute chromate challenge
Dorothea K. Thompson, K. Chourey, G. S. Wickham, S. Thieman +6 more
2010BMC Genomics66 citations Open access
Semantic Scholar
Expression and heat‐responsive regulation of a TFIIB homologue from the archaeon Haloferax volcanii
Dorothea K. Thompson, J. R. Palmer, C. Daniels
1999Molecular Microbiology60 citations Open access
Semantic Scholar
Characterization of two heat shock genes from Haloferax volcanii: a model system for transcription regulation in the Archaea
Yen-Ping M. Kuo, Dorothea K. Thompson, A. St. Jean, R. L. Charlebois +1 more
1997Journal of Bacteriology59 citations Open access
Semantic Scholar
Cellular Response of Shewanella oneidensis to Strontium Stress
S. Brown, Madhavi Z. Martin, S. Deshpande, S. Seal +10 more
2006Applied and Environmental Microbiology56 citations Open access
Semantic Scholar
DNA Microarray Technology
Ji-Zhong Zhou, Dorothea K. Thompson
200554 citations
Semantic Scholar
Global Transcriptome Analysis of the Cold Shock Response of Shewanella oneidensis MR-1 and Mutational Analysis of Its Classical Cold Shock Proteins‡
Haichun Gao, Zamin-K. Yang, Li-You Wu, Dorothea K. Thompson +1 more
200650 citations
Semantic Scholar
Heat shock inducibility of an archaeal TATA‐like promoter is controlled by adjacent sequence elements
Dorothea K. Thompson, C. Daniels
1998Molecular Microbiology49 citations Open access
Semantic Scholar
Global proteomic analysis of the chromate response in Arthrobacter sp. strain FB24.
K. L. Henne, Joshua E. Turse, C. Nicora, M. Lipton +7 more
2009Journal of Proteome Research47 citations
Semantic Scholar
Microarray Transcription Profiling of a Shewanella oneidensis
A. Beliaev, Dorothea K. Thompson, M. Fields, Li-You Wu +3 more
200245 citations
Semantic Scholar
Raman Chemical Imaging of Chromate Reduction Sites in a Single Bacterium Using Intracellularly Grown Gold Nanoislands
S. Ravindranath, K. L. Henne, Dorothea K. Thompson, J. Irudayaraj
2011ACS Nano43 citations Open access
Semantic Scholar
A putative azoreductase gene is involved in the Shewanella oneidensis response to heavy metal stress
Irina Mugerfeld, Brittany A. Law, G. S. Wickham, Dorothea K. Thompson
2009Applied Microbiology and Biotechnology39 citations
Semantic Scholar
Surface-Enhanced Raman Imaging of Intracellular Bioreduction of Chromate in Shewanella oneidensis
S. Ravindranath, K. L. Henne, Dorothea K. Thompson, J. Irudayaraj
2011PLoS ONE38 citations Open access
Semantic Scholar
Transcriptome analysis reveals response regulator SO2426-mediated gene expression in Shewanella oneidensis MR-1 under chromate challenge
K. Chourey, Wei Wei, Xiu-Feng Wan, Dorothea K. Thompson
2008BMC Genomics30 citations Open access
Semantic Scholar
Intracellularly grown gold nanoislands as SERS substrates for monitoring chromate, sulfate and nitrate localization sites in remediating bacteria biofilms by Raman chemical imaging
S. Ravindranath, U. Kadam, Dorothea K. Thompson, J. Irudayaraj
2012Analytica Chimica Acta24 citations Open access
Semantic Scholar
Comparative temporal proteomics of a response regulator (SO2426)-deficient strain and wild-type Shewanella oneidensis MR-1 during chromate transformation.
K. Chourey, Melissa R. Thompson, M. Shah, Bing Zhang +3 more
2009Journal of Proteome Research23 citations
Semantic Scholar
Microarray Technology and Applications in Environmental Microbiology
Ji-Zhong Zhou, Dorothea K. Thompson
200423 citations
Semantic Scholar
Purification and properties of an acetoacetyl coenzyme A-reacting phosphotransbutyrylase from Clostridium beijerinckii ("Clostridium butylicum") NRRL B593
Dorothea K. Thompson, Jiann-Shin Chen
1990Applied and Environmental Microbiology23 citations Open access
Semantic Scholar
Microbial Functional Genomics: Zhou/Microbial Functional Genomics
Ji-Zhong Zhou, Dorothea K. Thompson, Yinghe Xu, J. Tiedje
200518 citations
Semantic Scholar
Microarray-based whole-genome hybridization as a tool for determining procaryotic species relatedness
Li-You Wu, Xue-Duan Liu, M. Fields, Dorothea K. Thompson +4 more
2008The ISME Journal16 citations Open access
Semantic Scholar
Systematic assessment of the benefits and caveats in mining microbial post-translational modifications from shotgun proteomic data: the response of Shewanella oneidensis to chromate exposure.
Melissa R. Thompson, Dorothea K. Thompson, R. Hettich
2008Journal of Proteome Research11 citations
Semantic Scholar
Microarrays: Applications in Environmental Microbiology
Ji-Zhong Zhou, Dorothea K. Thompson
20038 citations
Semantic Scholar
Genomics: Toward a Genome‐Level Understanding of the Structure, Functions, and Evolution of Biological Systems
Ji-Zhong Zhou, Dorothea K. Thompson, J. Tiedje
20054 citations
Semantic Scholar
Metagenome Analysis of Contaminated Sediments at the DOE Hanford Site
Haichun Gao, S. Brown, Y. Gorby, M. Lipton +26 more
20054 citations
Semantic Scholar
A Computational Study of Shewanella oneidensis MR-1: Structural Prediction and Functional Inference of Hypothetical Proteins
C. Yost, L. Hauser, F. Larimer, Dorothea K. Thompson +4 more
2003Omics4 citations
Semantic Scholar
Trace: Tennessee Research and Creative Exchange Microbiology Publications and Other Works Microbiology So2426 Is a Positive Regulator of Siderophore Expression in Shewanella Oneidensis Mr-1 Recommended Citation So2426 Is a Positive Regulator of Siderophore Expression in Shewanella Oneidensis Mr-1
K. L. Henne, Xiu-Feng Wan, Wei Wei, Dorothea K. Thompson
3 citations
Semantic Scholar
Microbial Evolution from a Genomics Perspective
Ji-Zhong Zhou, Dorothea K. Thompson
20052 citations
Semantic Scholar
Dosage-Dependent Proteome Response of Shewanella oneidensis MR-1 to Chromate Insult
Melissa R. Thompson, N. Verberkmoes, K. Chourey, S. Brown +2 more
20061 citations
Semantic Scholar
The Functional Genomics of Model Organisms: Addressing Old Questions from a New Perspective
Dorothea K. Thompson, Ji-Zhong Zhou
20051 citations
Semantic Scholar
Functional Genomic Analysis of Bacterial Pathogens and Environmentally Significant Microorganisms
Dorothea K. Thompson, Ji-Zhong Zhou
20051 citations
Semantic Scholar
Special Session V: Advances in Ecological Genomics
Ji-Zhong Zhou, Xi-Chun Zhou, Xue-Dan Liu, Li-You Wu +8 more
20021 citations
Semantic Scholar
Post-Conviction Access to a State's Forensic DNA Evidence for Probative Testing: Not a Freestanding Constitutional Right
Dorothea K. Thompson
20140 citations
Semantic Scholar
GTL Program Projects
Gtl Program Projects, G. Church, S. Chisholm, M. Polz +62 more
20100 citations
Semantic Scholar

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Ji-Zhong Zhou×30
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Li-You Wu×15
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K. Chourey×8
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R. Hettich×8
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Xue-Duan Liu — researcher profile on SciRah

N. Verberkmoes×7

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A. Beliaev — researcher profile on SciRah

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Melissa R. Thompson×6

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Melissa R. Thompson — researcher profile on SciRah

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Haichun Gao — researcher profile on SciRah