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Qi Sun · SciRah

Researcher profile · Semantic Scholar

Qi Sun

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Qi Sun — researcher profile on SciRah

h-index: 57
Works: 143
Citations: 27K

Most-cited papers

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline
J. Glaubitz, T. Casstevens, Fei Lu, J. Harriman +3 more
2014PLoS ONE1,520 citations Open access
Semantic Scholar
Host genetic variation impacts microbiome composition across human body sites
R. Blekhman, J. Goodrich, Katherine H. Huang, Qi Sun +7 more
2015Genome Biology711 citations Open access
Semantic Scholar
Maize HapMap2 identifies extant variation from a genome in flux
Jer-Ming Chia, Chi Song, P. Bradbury, D. Costich +34 more
2012Nature Genetics602 citations
Semantic Scholar
A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome
M. Ganal, G. Durstewitz, A. Polley, A. Bérard +15 more
2011PLoS ONE595 citations Open access
Semantic Scholar
Construction of the third-generation Zea mays haplotype map
R. Bukowski, Xiao-Sen Guo, Yanli Lu, C. Zou +22 more
2015bioRxiv325 citations Open access
Semantic Scholar
Comparative analyses of C4 and C3 photosynthesis in developing leaves of maize and rice
Lin Wang, Angelika Czedik-Eysenberg, Rachel A. Mertz, Yaqing Si +24 more
2014Nature Biotechnology267 citations
Semantic Scholar
The Functional Network of the Arabidopsis Plastoglobule Proteome Based on Quantitative Proteomics and Genome-Wide Coexpression Analysis1[C][W][OA]
P. Lundquist, A. Poliakov, Nazmul H. Bhuiyan, B. Zybailov +2 more
2012Plant Physiology221 citations Open access
Semantic Scholar
The Role of cis Regulatory Evolution in Maize Domestication
Zachary H. Lemmon, R. Bukowski, Qi Sun, J. Doebley
2014PLoS Genetics141 citations Open access
Semantic Scholar
Large-Scale Label-Free Quantitative Proteomics of the Pea aphid-Buchnera Symbiosis*
A. Poliakov, C. Russell, L. Ponnala, H. Hoops +3 more
2011Molecular & Cellular Proteomics141 citations Open access
Semantic Scholar
Correlation of mRNA and protein abundance in the developing maize leaf.
L. Ponnala, Yu-Peng Wang, Qi Sun, K. V. van Wijk
2014The Plant Journal134 citations Open access
Semantic Scholar
BrAPI—an application programming interface for plant breeding applications
Peter Selby, Rafael Abbeloos, J. Backlund, Martin Basterrechea Salido +51 more
2019Bioinform.115 citations Open access
Semantic Scholar
Heterozygous Mapping Strategy (HetMappS) for High Resolution Genotyping-By-Sequencing Markers: A Case Study in Grapevine
K. Hyma, P. Barba, Ming-Hui Wang, J. Londo +5 more
2015PLoS ONE110 citations Open access
Semantic Scholar
Loss of Plastoglobule Kinases ABC1K1 and ABC1K3 Causes Conditional Degreening, Modified Prenyl-Lipids, and Recruitment of the Jasmonic Acid Pathway[W]
P. Lundquist, A. Poliakov, L. Giacomelli, G. Friso +7 more
2013The Plant Cell109 citations Open access
Semantic Scholar
White shark genome reveals ancient elasmobranch adaptations associated with wound healing and the maintenance of genome stability
Nicholas J. Marra, M. Stanhope, N. Jue, Ming-Hui Wang +12 more
2019Proceedings of the National Academy of Sciences of the United States of America105 citations Open access
Semantic Scholar
Genomic features shaping the landscape of meiotic double-strand-break hotspots in maize
Yan He, Ming-Hui Wang, Stefanie Dukowic-Schulze, Adele Zhou +14 more
2017Proceedings of the National Academy of Sciences of the United States of America105 citations Open access
Semantic Scholar
Construction of plastid reference proteomes for maize and Arabidopsis and evaluation of their orthologous relationships; the concept of orthoproteomics.
Ming-Shu Huang, G. Friso, K. Nishimura, Xian Qu +4 more
2013Journal of Proteome Research99 citations
Semantic Scholar
Transcriptomic Analyses Indicate That Maize Ligule Development Recapitulates Gene Expression Patterns That Occur during Lateral Organ Initiation[W][OPEN]
R. Johnston, Ming-Hui Wang, Qi Sun, A. Sylvester +2 more
2014The Plant Cell94 citations Open access
Semantic Scholar
A next-generation marker genotyping platform (AmpSeq) in heterozygous crops: a case study for marker-assisted selection in grapevine
Shan-Shan Yang, J. Fresnedo-Ramírez, Ming-Hui Wang, L. Cote +14 more
2016Horticulture Research84 citations Open access
Semantic Scholar
High-resolution crossover mapping reveals similarities and differences of male and female recombination in maize
P. Kianian, Ming-Hui Wang, K. Simons, F. Ghavami +9 more
2018Nature Communications82 citations Open access
Semantic Scholar
Developmental dynamics of Kranz cell transcriptional specificity in maize leaf reveals early onset of C4-related processes
S. L. Tausta, Pinghua Li, Yaqing Si, Neeru Gandotra +4 more
2014Journal of Experimental Botany80 citations Open access
Semantic Scholar
The genetic architecture of teosinte catalyzed and constrained maize domestication
C. Yang, L. F. Samayoa, P. Bradbury, B. Olukolu +13 more
2019Proceedings of the National Academy of Sciences of the United States of America73 citations Open access
Semantic Scholar
HOS15 and HDA9 negatively regulate immunity through histone deacetylation of intracellular immune receptor NLR genes in Arabidopsis
Leiyun Yang, Xiang-Song Chen, Zhixue Wang, Qi Sun +4 more
2019New Phytologist69 citations Open access
Semantic Scholar
Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus
C. Zou, A. Karn, B. Reisch, A. Nguyen +15 more
2020Nature Communications68 citations Open access
Semantic Scholar
Genetic dissection of powdery mildew resistance in interspecific half-sib grapevine families using SNP-based maps
S. L. Teh, J. Fresnedo-Ramírez, M. Clark, D. Gadoury +3 more
2016Molecular breeding67 citations Open access
Semantic Scholar
Computational Analysis of AmpSeq Data for Targeted, High-Throughput Genotyping of Amplicons
J. Fresnedo-Ramírez, Shan-Shan Yang, Qi Sun, A. Karn +2 more
2019Frontiers in Plant Science63 citations Open access
Semantic Scholar
Identification of Photosynthesis-Associated C4 Candidate Genes through Comparative Leaf Gradient Transcriptome in Multiple Lineages of C3 and C4 Species
Ze-Hong Ding, Sarit Weissmann, Ming-Hui Wang, Bai-Juan Du +8 more
2015PLoS ONE58 citations Open access
Semantic Scholar
The Arabidopsis PeptideAtlas: Harnessing worldwide proteomics data to create a comprehensive community proteomics resource.
K. V. van Wijk, Tami Leppert, Qi Sun, Sascha S. Boguraev +3 more
2021The Plant Cell56 citations Open access
Semantic Scholar
Food microbe tracker: a web-based tool for storage and comparison of food-associated microbes.
P. Vangay, Eric B. Fugett, Qi Sun, M. Wiedmann
2013Journal of Food Protection55 citations Open access
Semantic Scholar
Next Generation Mapping of Enological Traits in an F2 Interspecific Grapevine Hybrid Family
Shan-Shan Yang, J. Fresnedo-Ramírez, Qi Sun, David C. Manns +7 more
2016PLoS ONE54 citations Open access
Semantic Scholar
Obesity promotes breast epithelium DNA damage in women carrying a germline mutation in BRCA1 or BRCA2
P. Bhardwaj, N. Iyengar, Heba M. Zahid, Katharine M. Carter +24 more
2023Science Translational Medicine53 citations Open access
Semantic Scholar
Transcriptome response of cassava leaves under natural shade
Ze-Hong Ding, Yang Zhang, Yi Xiao, Fangfang Liu +8 more
2016Scientific Reports52 citations Open access
Semantic Scholar
The transcriptome landscape of early maize meiosis
Stefanie Dukowic-Schulze, A. Sundararajan, J. Mudge, Thiruvarangan Ramaraj +8 more
2014BMC Plant Biology52 citations Open access
Semantic Scholar
Multiple independent recombinations led to hermaphroditism in grapevine
C. Zou, Mélanie Massonnet, A. Minio, Sagar Patel +9 more
2021Proceedings of the National Academy of Sciences of the United States of America45 citations Open access
Semantic Scholar
Gene Discovery Using Mutagen-Induced Polymorphisms and Deep Sequencing: Application to Plant Disease Resistance
Ying Zhu, Hyunggon Mang, Qi Sun, J. Qian +2 more
2012Genetics44 citations Open access
Semantic Scholar
Genotyping-by-sequencing of Brassica oleracea vegetables reveals unique phylogenetic patterns, population structure and domestication footprints
Zachary J. Stansell, K. Hyma, J. Fresnedo-Ramírez, Qi Sun +3 more
2018Horticulture Research41 citations Open access
Semantic Scholar
The Arabidopsis Chromatin-Remodeling Factor CHR5 Regulates Plant Immune Responses and Nucleosome Occupancy
Bao-Hong Zou, Qi Sun, Wenli Zhang, Yuan Ding +3 more
2017Plant and Cell Physiology35 citations
Semantic Scholar
Developmental and Subcellular Organization of Single-Cell C₄ Photosynthesis in Bienertia sinuspersici Determined by Large-Scale Proteomics and cDNA Assembly from 454 DNA Sequencing.
Sascha Offermann, G. Friso, Kelly A. Doroshenk, Qi Sun +5 more
2015Journal of Proteome Research34 citations
Semantic Scholar
The genetic architecture of the maize progenitor, teosinte, and how it was altered during maize domestication
Qiuyue Chen, L. F. Samayoa, C. Yang, P. Bradbury +9 more
2020PLoS Genetics32 citations Open access
Semantic Scholar
The Plastid and Mitochondrial Peptidase Network in Arabidopsis thaliana: A Foundation for Testing Genetic Interactions and Functions in Organellar Proteostasis
Kristina Majsec, Nazmul H. Bhuiyan, Qi Sun, Sunita Kumari +3 more
2017The Plant Cell31 citations Open access
Semantic Scholar
Genomes of endangered great hammerhead and shortfin mako sharks reveal historic population declines and high levels of inbreeding in great hammerhead
M. Stanhope, Kristina M. Ceres, Qi Sun, Ming-Hui Wang +8 more
2022iScience27 citations Open access
Semantic Scholar
Discovery of the REN11 Locus From Vitis aestivalis for Stable Resistance to Grapevine Powdery Mildew in a Family Segregating for Several Unstable and Tissue-Specific Quantitative Resistance Loci
A. Karn, C. Zou, S. Brooks, J. Fresnedo-Ramírez +6 more
2021Frontiers in Plant Science27 citations Open access
Semantic Scholar
Lessons from a Phenotyping Center Revealed by the Genome-Guided Mapping of Powdery Mildew Resistance Loci.
L. Cadle-Davidson, D. Gadoury, J. Fresnedo-Ramírez, Shan-Shan Yang +9 more
2016Phytopathology23 citations
Semantic Scholar
Gene Evolutionary Trajectories and GC Patterns Driven by Recombination in Zea mays
A. Sundararajan, Stefanie Dukowic-Schulze, M. Kwicklis, Kayla Engstrom +12 more
2016Frontiers in Plant Science22 citations Open access
Semantic Scholar
Natural variations of growth thermo-responsiveness determined by SAUR26/27/28 proteins in Arabidopsis thaliana.
Zhixue Wang, Leiyun Yang, Zhen-Hua Liu, Minghui Lu +6 more
2019New Phytologist21 citations Open access
Semantic Scholar
Cardiac Pathology and Genomics of Sudden Death in Racehorses From New York and Maryland Racetracks
Alex Molesan, Ming-Hui Wang, Qi Sun, V. Pierce +4 more
2019Veterinary Pathology-Supplement20 citations Open access
Semantic Scholar
The CLP and PREP protease systems coordinate maturation and degradation of the chloroplast proteome in Arabidopsis thaliana.
Elden Rowland, Jitae Kim, G. Friso, A. Poliakov +3 more
2022New Phytologist17 citations
Semantic Scholar
Characterization of maize leaf pyruvate orthophosphate dikinase using high throughput sequencing.
Yu-Ling Zhang, R. Giuliani, You-Qing Zhang, Yang Zhang +9 more
2018Journal of Integrative Plant Biology17 citations Open access
Semantic Scholar
A Role of Cytokinin Transporter in Arabidopsis Immunity.
Shuai Wang, Shu Wang, Qi Sun, Leiyun Yang +3 more
2017Molecular Plant-Microbe Interactions17 citations Open access
Semantic Scholar
Differential gene expression during conidiation in the grape powdery mildew pathogen, Erysiphe necator.
L. Wakefield, D. Gadoury, R. Seem, M. Milgroom +2 more
2011Phytopathology16 citations
Semantic Scholar
Interaction of Arabidopsis Trihelix-Domain Transcription Factors VFP3 and VFP5 with Agrobacterium Virulence Protein VirF
E. García-Cano, Shimpei Magori, Qi Sun, Ze-Hong Ding +2 more
2015PLoS ONE15 citations Open access
Semantic Scholar

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