Cécile Monat

Most-cited papers

1. Multiple wheat genomes reveal global variation in modern breeding

   Sean Walkowiak, Liangliang Gao, Cécile Monat, G. Haberer +94 more

   2020Nature773 citations Open access

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2. The barley pan-genome reveals the hidden legacy of mutation breeding

   Murukarthick Jayakodi, S. Padmarasu, G. Haberer, V. S. Bonthala +40 more

   2020Nature445 citations Open access

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3. TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

   Cécile Monat, S. Padmarasu, Thomas M. Lux, T. Wicker +14 more

   2019Genome Biology214 citations Open access

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4. The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.

   P. Cubry, C. Tranchant-Dubreuil, A. Thuillet, Cécile Monat +13 more

   2018Current Biology103 citations Open access

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5. Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves high resolution for research and breeding

   J. Aury, S. Engelen, Benjamin Istace, Cécile Monat +15 more

   2021bioRxiv77 citations Open access

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6. The Aegilops ventricosa 2NvS segment in bread wheat: cytology, genomics and breeding

   Liangliang Gao, D. Koo, P. Juliana, T. Rife +19 more

   2020Theoretical and Applied Genetics62 citations Open access

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7. Wheat Panache: A pangenome graph database representing presence–absence variation across sixteen bread wheat genomes

   P. Bayer, J. Petereit, Éloi Durant, Cécile Monat +7 more

   2022The Plant Genome43 citations Open access

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8. Prospects of pan-genomics in barley

   Cécile Monat, M. Schreiber, N. Stein, M. Mascher

   2018Theoretical and Applied Genetics41 citations

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9. De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium-Resistant Genes in East Asian Genotypes

   K. Shimizu, D. Copetti, Moeko Okada, T. Wicker +29 more

   2020Plant and Cell Physiology33 citations Open access

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10. TOGGLE: toolbox for generic NGS analyses

    Cécile Monat, C. Tranchant-Dubreuil, Ayité Kougbeadjo, Cédric Farcy +7 more

    2015BMC Bioinformatics26 citations Open access

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11. De Novo Assemblies of Three Oryza glaberrima Accessions Provide First Insights about Pan-Genome of African Rices

    Cécile Monat, B. Pera, M. Ndjiondjop, Mounirou Sow +4 more

    2016Genome Biology and Evolution25 citations Open access

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12. LTRclassifier: A website for fast structural LTR retrotransposons classification in plants

    Cécile Monat, Ndomassi Tando, C. Tranchant-Dubreuil, F. Sabot

    2016Mobile Genetic Elements14 citations Open access

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13. DuplicationDetector, a light weight tool for duplication detection using NGS data

    G. Djedatin, Cécile Monat, S. Engelen, F. Sabot

    201711 citations Open access

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14. TOGGLe, a flexible framework for easily building complex workflows and performing robust large-scale NGS analyses

    C. Tranchant-Dubreuil, Sébastien Ravel, Cécile Monat, G. Sarah +6 more

    2018bioRxiv10 citations Open access

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15. The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics

    V. Guignon, Yann Hueber, M. Rouard, S. Bocs +25 more

    201610 citations Open access

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16. Wheat Panache - a pangenome graph database representing presence/absence variation across 16 bread wheat genomes

    P. Bayer, J. Petereit, Éloi Durant, Cécile Monat +7 more

    2022bioRxiv4 citations Open access

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17. Comparison of two African rice species through a new pan-genomic approach on massive data

    Cécile Monat, C. Tranchant-Dubreuil, S. Engelen, K. Labadie +3 more

    2018bioRxiv3 citations Open access

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18. Pangenomics in Crop Plants

    Cécile Monat, F. Sabot

    20202 citations

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19. SaVanache: indexing and visualizing pangenome variation graphs

    Mourdas Mohamed, Éloi Durant, M. Rouard, Cédric Muller +3 more

    2026bioRxiv1 citations Open access

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20. de novo assemblies of three Oryza glaberrima accessions provide first insights about pan-genome of African rices.

    Cécile Monat, B. Pera, M. Ndjiondjop, Mounirou Sow +4 more

    2016Genome Biology and Evolution1 citations

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21. Current Plant Biology

    G. Djedatin, Cécile Monat, Stefan Engelen, F. Sabot

    20180 citations

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22. The South Green Bioinformatics platform, a comprehensive resource for crop genomics

    M. Ruiz, A. Dereeper, G. Droc, G. Sarah +20 more

    20170 citations

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23. Toggle-3 : A Framework to Build Quickly Pipelines and to Perform Large-Scale NGS Analysis

    C. Tranchant-Dubreuil, Sébastien Ravel, Cécile Monat, Laura Helou +4 more

    20170 citations

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24. Pan-génome du riz africain cultivé Oryza glaberrima et son ancêtre sauvage Oryza barthii

    Cécile Monat

    20160 citations

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25. South Green bioinformatics platform: Update 2015

    Alix Armero, F. Baurens, S. Bocs, A. Breil +30 more

    20150 citations

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26. African rices genome projects : GLASS and irigin : [P129]

    Cécile Monat, C. Tranchant-Dubreuil, M. Lorieux, A. Ghesquière +2 more

    20140 citations

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27. African Rices Genome Projects : GLASS and Irigin

    Cécile Monat

    20140 citations

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28. Diving, and even digging, into the wild jungle of annotation pathways for non-vertebrate animals

    F. Sabot, Cécile Monat, Yann Bourgeois, Valentina Peona +1 more

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