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P. Bayer · SciRah

Researcher profile · Semantic Scholar

P. Bayer

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P. Bayer — researcher profile on SciRah

h-index: 43
Works: 168
Citations: 12K

Most-cited papers

Plant pan-genomes are the new reference
P. Bayer, Agnieszka A. Golicz, Armin Scheben, J. Batley +1 more
2020Nature Plants417 citations Open access
Semantic Scholar
Fast-forward breeding for a food-secure world.
R. Varshney, A. Bohra, Manish Roorkiwal, Rutwik Barmukh +13 more
2021Trends in Genetics146 citations Open access
Semantic Scholar
Current status of structural variation studies in plants
Yuxuan Yuan, P. Bayer, J. Batley, D. Edwards
2021Plant Biotechnology Journal135 citations Open access
Semantic Scholar
Plant pangenomics: approaches, applications and advancements.
M. F. Danilevicz, Cassandria G. Tay Fernandez, J. Marsh, P. Bayer +1 more
2020Current opinion in plant biology107 citations Open access
Semantic Scholar
Trait associations in the pangenome of pigeon pea (Cajanus cajan)
Jun-Liang Zhao, P. Bayer, P. Ruperao, R. Saxena +6 more
2020Plant Biotechnology Journal95 citations Open access
Semantic Scholar
Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding
P. Bayer, B. Valliyodan, Haifei Hu, J. Marsh +9 more
2021The Plant Genome87 citations Open access
Semantic Scholar
Plant Genotype to Phenotype Prediction Using Machine Learning
M. F. Danilevicz, Mitchell Gill, Robyn Anderson, J. Batley +3 more
2022Frontiers in Genetics86 citations Open access
Semantic Scholar
Genotype–Environment mismatch of kelp forests under climate change
S. Vranken, T. Wernberg, Armin Scheben, A. Severn-Ellis +5 more
2021Molecular Ecology86 citations
Semantic Scholar
Machine learning models outperform deep learning models, provide interpretation and facilitate feature selection for soybean trait prediction
Mitchell Gill, Robyn Anderson, Haifei Hu, M. Bennamoun +6 more
2022BMC Plant Biology76 citations Open access
Semantic Scholar
Maize Yield Prediction at an Early Developmental Stage Using Multispectral Images and Genotype Data for Preliminary Hybrid Selection
M. F. Danilevicz, P. Bayer, Farid Boussaïd, Bennamoun +1 more
2021Remote Sensing70 citations Open access
Semantic Scholar
The application of pangenomics and machine learning in genomic selection in plants
P. Bayer, J. Petereit, M. F. Danilevicz, Robyn Anderson +2 more
2021The Plant Genome67 citations Open access
Semantic Scholar
Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs
S. Zanini, P. Bayer, Rachel Wells, R. Snowdon +5 more
2021The Plant Genome66 citations Open access
Semantic Scholar
Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea
A. Khan, Vanika Garg, Shuai Sun, Saurabh Gupta +21 more
2024Nature Genetics62 citations
Semantic Scholar
Modelling of gene loss propensity in the pangenomes of three Brassica species suggests different mechanisms between polyploids and diploids
P. Bayer, Armin Scheben, Agnieszka A. Golicz, Yuxuan Yuan +19 more
2021Plant Biotechnology Journal62 citations Open access
Semantic Scholar
The pangenome of banana highlights differences between genera and genomes
H. Rijzaani, P. Bayer, M. Rouard, J. Doležel +2 more
2021The Plant Genome58 citations Open access
Semantic Scholar
Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing
B. Valliyodan, Anne V. Brown, Jue-Xin Wang, G. Patil +21 more
2021Scientific Data54 citations Open access
Semantic Scholar
Genomic rearrangements have consequences for introgression breeding as revealed by genome assemblies of wild and cultivated lentil species
L. Ramsay, C. Koh, S. Kagale, Dong-Ying Gao +24 more
2021bioRxiv51 citations Open access
Semantic Scholar
Extensive polyploid clonality was a successful strategy for seagrass to expand into a newly submerged environment
Jane M. Edgeloe, A. Severn-Ellis, P. Bayer, Shaghayegh Mehravi +5 more
2022Proceedings of the Royal Society B50 citations Open access
Semantic Scholar
Resources for image-based high-throughput phenotyping in crops and data sharing challenges
M. F. Danilevicz, P. Bayer, B. Nestor, Bennamoun +1 more
2021Plant Physiology48 citations Open access
Semantic Scholar
Wheat Panache: A pangenome graph database representing presence–absence variation across sixteen bread wheat genomes
P. Bayer, J. Petereit, Éloi Durant, Cécile Monat +7 more
2022The Plant Genome43 citations Open access
Semantic Scholar
Application of machine learning and genomics for orphan crop improvement
Tessa R. MacNish, M. F. Danilevicz, P. Bayer, Mitchell S. Bestry +1 more
2025Nature Communications36 citations Open access
Semantic Scholar
Induced Methylation in Plants as a Crop Improvement Tool: Progress and Perspectives
Clémentine Mercé, P. Bayer, Cassandria G. Tay Fernandez, J. Batley +1 more
2020Agronomy36 citations Open access
Semantic Scholar
Adaptive gene loss in the common bean pan-genome during range expansion and domestication
Gaia Cortinovis, Leonardo Vincenzi, Robyn Anderson, Giovanni Marturano +25 more
2023bioRxiv35 citations Open access
Semantic Scholar
Brassica napus genes Rlm4 and Rlm7, conferring resistance to Leptosphaeria maculans, are alleles of the Rlm9 wall‐associated kinase‐like resistance locus
P. Haddadi, N. Larkan, A. V. Van de Wouw, Yueqi Zhang +6 more
2021bioRxiv34 citations Open access
Semantic Scholar
Machine learning in agriculture: from silos to marketplaces
P. Bayer, D. Edwards
2020Plant Biotechnology Journal33 citations Open access
Semantic Scholar
Resistance Gene Analogs in the Brassicaceae: Identification, Characterization, Distribution, and Evolution1[OPEN]
Soodeh Tirnaz, P. Bayer, F. Inturrisi, Fang-Ning Zhang +9 more
2020Plant Physiology32 citations Open access
Semantic Scholar
Assembly of the non‐heading pak choi genome and comparison with the genomes of heading Chinese cabbage and the oilseed yellow sarson
Pei-Rong Li, Tong-Bing Su, Xiu-Yun Zhao, Wei-Hong Wang +6 more
2020Plant Biotechnology Journal32 citations Open access
Semantic Scholar
Amborella gene presence/absence variation is associated with abiotic stress responses that may contribute to environmental adaptation
Haifei Hu, Armin Scheben, Brent Verpaalen, Soodeh Tirnaz +6 more
2021New Phytologist31 citations Open access
Semantic Scholar
A pan‐genome and chromosome‐length reference genome of narrow‐leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits
Gagan Garg, L. Kamphuis, P. Bayer, P. Kaur +8 more
2022The Plant Journal30 citations Open access
Semantic Scholar
Pangenomes as a Resource to Accelerate Breeding of Under-Utilised Crop Species
Cassandria G. Tay Fernandez, B. Nestor, M. F. Danilevicz, Mitchell Gill +5 more
2022International Journal of Molecular Sciences27 citations Open access
Semantic Scholar
Seafood label quality and mislabelling rates hamper consumer choices for sustainability in Australia
Megan E. Cundy, Julia Santana-Garcon, A. McLennan, Marcelle E Ayad +5 more
2023Scientific Reports26 citations Open access
Semantic Scholar
Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts
Alan E. Yocca, A. Platts, Elizabeth I. Alger, Scott J. Teresi +22 more
2023Horticulture Research25 citations Open access
Semantic Scholar
Expanding Gene-Editing Potential in Crop Improvement with Pangenomes
Cassandria G. Tay Fernandez, B. Nestor, M. F. Danilevicz, J. Marsh +4 more
2022International Journal of Molecular Sciences24 citations Open access
Semantic Scholar
Pangenomics and Crop Genome Adaptation in a Changing Climate
J. Petereit, P. Bayer, W. J. W. Thomas, Cassandria G. Tay Fernandez +4 more
2022Plants24 citations Open access
Semantic Scholar
Approaches to increase the validity of gene family identification using manual homology search tools
B. Nestor, P. Bayer, Cassandria G. Tay Fernandez, D. Edwards +1 more
2023Genetica20 citations Open access
Semantic Scholar
DNABERT-based explainable lncRNA identification in plant genome assemblies
M. F. Danilevicz, Mitchell Gill, Cassandria G. Tay Fernandez, J. Petereit +5 more
2022bioRxiv20 citations Open access
Semantic Scholar
Marine heatwaves have minimal influence on the quality of adult Sydney rock oyster flesh.
E. Ewere, Nedeljka N. Rosic, P. Bayer, A. Ngangbam +4 more
2021Science of the Total Environment20 citations
Semantic Scholar
Resistance Gene Analogs in the Brassicaceae: Identification, Characterization, Distribution, and Evolution.
Soodeh Tirnaz, P. Bayer, F. Inturrisi, Fang-Ning Zhang +9 more
2020Plant Physiology19 citations Open access
Semantic Scholar
Comparative pangenome analyses provide insights into the evolution of Brassica rapa resistance gene analogues (RGAs)
J. Amas, P. Bayer, Wei-Hong Tan, Soodeh Tirnaz +3 more
2023Plant Biotechnology Journal18 citations Open access
Semantic Scholar
Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003
J. Marsh, Haifei Hu, J. Petereit, P. Bayer +4 more
2021Theoretical and Applied Genetics18 citations Open access
Semantic Scholar
Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts
Alan E. Yocca, A. Platts, Elizabeth I. Alger, Scott J. Teresi +22 more
2023bioRxiv16 citations Open access
Semantic Scholar
QTL Genetic Mapping Study for Traits Affecting Meal Quality in Winter Oilseed Rape (Brassica Napus L.)
K. Gacek, P. Bayer, Robyn Anderson, A. Severn-Ellis +6 more
2021Genes16 citations Open access
Semantic Scholar
Brassica Panache: A multi‐species graph pangenome representing presence absence variation across forty‐one Brassica genomes
Tessa R. MacNish, H. Al-Mamun, P. Bayer, Connor McPhan +7 more
2024The Plant Genome15 citations Open access
Semantic Scholar
Effect of Leptosphaeria maculans Infection on Promoter DNA Methylation of Defence Genes in Brassica napus
Soodeh Tirnaz, Clémentine Mercé, P. Bayer, A. Severn-Ellis +2 more
2020Agronomy15 citations Open access
Semantic Scholar
Diversity of fatty acid biosynthesis genes across the soybean pangenome
Mark C. Derbyshire, J. Marsh, Soodeh Tirnaz, H. Nguyen +3 more
2023The Plant Genome14 citations Open access
Semantic Scholar
Genetic and Genomic Resources for Soybean Breeding Research
J. Petereit, J. Marsh, P. Bayer, M. F. Danilevicz +3 more
2022Plants14 citations Open access
Semantic Scholar
Frontiers in Dissecting and Managing Brassica Diseases: From Reference-Based RGA Candidate Identification to Building Pan-RGAomes
Yueqi Zhang, W. Thomas, P. Bayer, D. Edwards +1 more
2020International Journal of Molecular Sciences14 citations Open access
Semantic Scholar
Genome-wide identification and comparative analysis of resistance genes in Brassica juncea
F. Inturrisi, P. Bayer, Hua Yang, Soodeh Tirnaz +2 more
2020Molecular breeding14 citations
Semantic Scholar
Copy Number Variation among Resistance Genes Analogues in Brassica napus
A. Dolatabadian, Yuxuan Yuan, P. Bayer, J. Petereit +5 more
2022Genes12 citations Open access
Semantic Scholar
Legume Pangenome Construction Using an Iterative Mapping and Assembly Approach.
Haifei Hu, Yuxuan Yuan, P. Bayer, C. T. Fernandez +3 more
2020Methods in molecular biology12 citations
Semantic Scholar

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