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D. Copetti · SciRah

Researcher profile · Semantic Scholar

D. Copetti

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D. Copetti — researcher profile on SciRah

h-index: 29
Works: 73
Citations: 6,409

Most-cited papers

Genomic variation in 3,010 diverse accessions of Asian cultivated rice
Wensheng Wang, R. Mauleon, Zhi-Qiang Hu, D. Chebotarov +67 more
2018Nature1,364 citations Open access
Semantic Scholar
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
I. Verde, A. Abbott, S. Scalabrin, Sook Jung +49 more
2013Nature Genetics1,066 citations Open access
Semantic Scholar
Multiple wheat genomes reveal global variation in modern breeding
Sean Walkowiak, Liangliang Gao, Cécile Monat, G. Haberer +94 more
2020Nature773 citations Open access
Semantic Scholar
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
J. Stein, Yeisoo Yu, D. Copetti, D. Zwickl +61 more
2018Nature Genetics474 citations Open access
Semantic Scholar
Rice SNP-seek database update: new SNPs, indels, and queries
Locedie Mansueto, R. R. Fuentes, F. N. Borja, Jeffery Detras +13 more
2016Nucleic Acids Res.314 citations Open access
Semantic Scholar
Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63
Jian-Wei Zhang, Ling-Ling Chen, Feng Xing, D. Kudrna +33 more
2016Proceedings of the National Academy of Sciences of the United States of America216 citations Open access
Semantic Scholar
Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species
Kyunghee Kim, Sang-Choon Lee, Junki Lee, Yeisoo Yu +27 more
2015Scientific Reports189 citations Open access
Semantic Scholar
Rapid evolution of protein diversity by de novo origination in Oryza
Li Zhang, Yan Ren, Tao Yang, Guang-Wei Li +18 more
2019Nature Ecology & Evolution169 citations
Semantic Scholar
Historical Introgression of the Downy Mildew Resistance Gene Rpv12 from the Asian Species Vitis amurensis into Grapevine Varieties
Silvia Venuti, D. Copetti, Serena Foria, L. Falginella +8 more
2013PLoS ONE140 citations Open access
Semantic Scholar
Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat.
M. Sanderson, D. Copetti, A. Búrquez, E. Bustamante +11 more
2015American-Eurasian journal of botany137 citations Open access
Semantic Scholar
Selective sweep at the Rpv3 locus during grapevine breeding for downy mildew resistance
G. Di Gaspero, D. Copetti, Courtney Coleman, S. Castellarin +9 more
2012Theoretical and Applied Genetics134 citations
Semantic Scholar
Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution
A. Geering, F. Maumus, D. Copetti, N. Choisne +8 more
2014Nature Communications111 citations Open access
Semantic Scholar
The powdery mildew resistance gene REN1 co-segregates with an NBS-LRR gene cluster in two Central Asian grapevines
Courtney Coleman, D. Copetti, G. Cipriani, S. Hoffmann +5 more
2009BMC Genetics109 citations Open access
Semantic Scholar
Genome-wide association mapping of date palm fruit traits
K. M. Hazzouri, M. Gros-Balthazard, J. Flowers, D. Copetti +17 more
2019Nature Communications104 citations Open access
Semantic Scholar
Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti
D. Copetti, A. Búrquez, E. Bustamante, J. Charboneau +9 more
2017Proceedings of the National Academy of Sciences of the United States of America100 citations Open access
Semantic Scholar
Genome sequence of the model rice variety KitaakeX
Rashmi Jain, J. Jenkins, S. Shu, M. Chern +19 more
2019BMC Genomics84 citations Open access
Semantic Scholar
A chromosome‐scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes
Kumar Paritosh, S. K. Yadava, Priyansha Singh, Latika Bhayana +10 more
2019bioRxiv78 citations Open access
Semantic Scholar
Evolution of l‐DOPA 4,5‐dioxygenase activity allows for recurrent specialisation to betalain pigmentation in Caryophyllales
Hester Sheehan, Tao Feng, Nathanael Walker-Hale, Samuel Lopez-Nieves +13 more
2019New Phytologist69 citations Open access
Semantic Scholar
Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice
Yong Zhou, Zhichao Yu, D. Chebotarov, K. Chougule +21 more
2023Nature Communications67 citations Open access
Semantic Scholar
RiTE database: a resource database for genus-wide rice genomics and evolutionary biology
D. Copetti, Jian-Wei Zhang, Moaine El Baidouri, Dong-Ying Gao +20 more
2015BMC Genomics66 citations Open access
Semantic Scholar
Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice
Marta Brozynska, D. Copetti, A. Furtado, R. Wing +4 more
2017Plant Biotechnology Journal55 citations Open access
Semantic Scholar
Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly
D. Frei, Elisabeth Veekman, D. Grogg, Ingrid Stoffel-Studer +7 more
2021Genome Biology and Evolution54 citations Open access
Semantic Scholar
Low-Input High-Molecular-Weight DNA Extraction for Long-Read Sequencing From Plants of Diverse Families
A. Russo, B. Mayjonade, D. Frei, G. Potente +7 more
2022Frontiers in Plant Science52 citations Open access
Semantic Scholar
Gene duplication and transposition of mobile elements drive evolution of the Rpv3 resistance locus in grapevine.
Serena Foria, D. Copetti, B. Eisenmann, Gabriele Magris +8 more
2019The Plant Journal41 citations Open access
Semantic Scholar
Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data
Jian-Wei Zhang, Ling-Ling Chen, Shuai Sun, D. Kudrna +26 more
2016Scientific Data38 citations Open access
Semantic Scholar
Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels
M. Shenton, Masaaki Kobayashi, S. Terashima, Hajime Ohyanagi +17 more
2020Genome Biology and Evolution36 citations Open access
Semantic Scholar
Tracing ancestor rice of Suriname Maroons back to its African origin
T. V. van Andel, Rachel S. Meyer, S. Aflitos, J. Carney +8 more
2016Nature Plants36 citations Open access
Semantic Scholar
De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium-Resistant Genes in East Asian Genotypes
K. Shimizu, D. Copetti, Moeko Okada, T. Wicker +29 more
2020Plant and Cell Physiology33 citations Open access
Semantic Scholar
The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests
K. Ng, Masaki J. Kobayashi, Jeffrey A. Fawcett, Masaomi Hatakeyama +19 more
2021Communications Biology29 citations Open access
Semantic Scholar
Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences
Jian-Wei Zhang, D. Kudrna, Ting Mu, Weiming Li +5 more
2016Bioinform.28 citations Open access
Semantic Scholar
Reciprocal allopolyploid grasses (Festuca × Lolium) display stable patterns of genome dominance
M. Glombik, D. Copetti, J. Bartoš, Štěpán Stočes +7 more
2021The Plant Journal21 citations Open access
Semantic Scholar
Identification of Candidate Genes for Self-Compatibility in Perennial Ryegrass (Lolium perenne L.)
Claudio Cropano, C. Manzanares, S. Yates, D. Copetti +4 more
2021bioRxiv18 citations Open access
Semantic Scholar
DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements
Jun Wang, Yeisoo Yu, F. Tao, Jian-Wei Zhang +6 more
2016Genome Biology18 citations Open access
Semantic Scholar
An improved chromosome-level genome assembly of perennial ryegrass (Lolium perenne L.)
Yu-Tang Chen, R. Kölliker, M. Mascher, D. Copetti +3 more
2023bioRxiv17 citations Open access
Semantic Scholar
Oryza genome evolution through a tetraploid lens
A. Fornasiero, Tao Feng, N. Al-Bader, Aseel Alsantely +23 more
2025Nature Genetics16 citations Open access
Semantic Scholar
Evidence for high intergenic sequence variation in heterozygous Italian ryegrass (Lolium multiflorum Lam.) genome revealed by a high-quality draft diploid genome assembly
D. Copetti, S. Yates, M. Vogt, G. Russo +3 more
2021bioRxiv15 citations Open access
Semantic Scholar
Fine-Mapping and Comparative Genomic Analysis Reveal the Gene Composition at the S and Z Self-incompatibility Loci in Grasses
Marius Rohner, C. Manzanares, S. Yates, D. Thorogood +4 more
2022bioRxiv13 citations Open access
Semantic Scholar
Multiple Wheat Genomes Reveal Novel Gli-2 Sublocus Location and Variation of Celiac Disease Epitopes in Duplicated α-Gliadin Genes
Gwyneth Halstead-Nussloch, Tsuyoshi Tanaka, D. Copetti, Timothy Paape +8 more
2021Frontiers in Plant Science13 citations Open access
Semantic Scholar
Oryza genome evolution through a tetraploid lens
A. Fornasiero, Tao Feng, N. Al-Bader, Aseel Alsantely +22 more
2024bioRxiv12 citations Open access
Semantic Scholar
Selective sweep at the Rpv3 locus during grapevine breeding for downy mildew resistance
G. Di Gaspero, D. Copetti, Courtney Coleman, S. Castellarin +9 more
2011Theoretical and Applied Genetics11 citations
Semantic Scholar
InDel markers for monitoring the introgression of downy mildew resistance from wild relatives into grape varieties
Serena Foria, Gabriele Magris, D. Copetti, Courtney Coleman +2 more
2018Molecular breeding10 citations
Semantic Scholar
Genomic resource development in hazelnut breeding
J. Snelling, V. Sathuvalli, Brooke C. Colburn, G. Bhattarai +5 more
2018Acta Horticulturae10 citations
Semantic Scholar
Universal orthologs infer deep phylogenies and improve genome quality assessments
Md Nafis Ul Alam, Cristian Román‐Palacios, D. Copetti, Rod A. Wing
2025bioRxiv9 citations Open access
Semantic Scholar
A pangenome and pantranscriptome of hexaploid oat
Raz Avni, N. Kamal, L. Bitz, E. Jellen +69 more
2024bioRxiv9 citations Open access
Semantic Scholar
Chromosome‐level haplotype‐resolved genome assembly provides insights into the highly heterozygous genome of Italian ryegrass (Lolium multiflorum Lam.)
Yu-Tang Chen, Jenny Kiesbauer, D. Copetti, Daniel Frei +4 more
2024bioRxiv8 citations Open access
Semantic Scholar
Updated Genome Assembly and Annotation for Metrosideros polymorpha, an Emerging Model Tree Species of Ecological Divergence
A. Izuno, T. Wicker, Masaomi Hatakeyama, D. Copetti +1 more
2019G3: Genes, Genomes, Genetics8 citations Open access
Semantic Scholar
Chromosome-scale de novo diploid assembly of the apple cultivar ‘Gala Galaxy’
Giovanni A. L. Broggini, I. Schlathölter, G. Russo, D. Copetti +3 more
2020bioRxiv7 citations Open access
Semantic Scholar
Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
J. Stein, Yeisoo Yu, D. Copetti, D. Zwickl +61 more
2018Nature Genetics7 citations Open access
Semantic Scholar
An improved genome assembly of the saguaro cactus (Carnegiea gigantea (Engelm.) Britton & Rose)
D. Copetti, A. Búrquez, K. Shimizu, R. Wing +2 more
2023bioRxiv4 citations Open access
Semantic Scholar
Origin and diversification of the saguaro cactus (Carnegiea gigantea): a within-species phylogenomic analysis.
M. Sanderson, A. Búrquez, D. Copetti, Michelle M. McMahon +2 more
2022Systematic Biology4 citations Open access
Semantic Scholar

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