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F. Sabot · SciRah

Researcher profile · Semantic Scholar

F. Sabot

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F. Sabot — researcher profile on SciRah

h-index: 29
Works: 106
Citations: 6,203

Most-cited papers

A unified classification system for eukaryotic transposable elements
T. Wicker, F. Sabot, A. Hua-Van, J. Bennetzen +9 more
2007Nature reviews genetics2,888 citations
Semantic Scholar
The genome of Theobroma cacao
X. Argout, J. Salse, J. Aury, M. Guiltinan +57 more
2011Nature Genetics711 citations Open access
Semantic Scholar
Molecular Basis of Evolutionary Events That Shaped the Hardness Locus in Diploid and Polyploid Wheat Species (Triticum and Aegilops)w⃞
N. Chantret, J. Salse, F. Sabot, S. Rahman +15 more
2005The Plant Cell Online386 citations Open access
Semantic Scholar
A knowledge-based molecular screen uncovers a broad-spectrum OsSWEET14 resistance allele to bacterial blight from wild rice.
M. Hutin, F. Sabot, A. Ghesquière, R. Koebnik +1 more
2015The Plant Journal210 citations Open access
Semantic Scholar
Cost‐effective enrichment hybridization capture of chloroplast genomes at deep multiplexing levels for population genetics and phylogeography studies
C. Mariac, N. Scarcelli, Juliette Pouzadou, A. Barnaud +9 more
2014Molecular Ecology Resources121 citations
Semantic Scholar
The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.
P. Cubry, C. Tranchant-Dubreuil, A. Thuillet, Cécile Monat +13 more
2018Current Biology103 citations Open access
Semantic Scholar
Transposable Elements Are a Major Cause of Somatic Polymorphism in Vitis vinifera L.
G. Carrier, L. le Cunff, A. Dereeper, D. Legrand +5 more
2012PLoS ONE102 citations Open access
Semantic Scholar
Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations
F. Sabot, R. Guyot, T. Wicker, N. Chantret +5 more
2005Zeitschrift für Induktive Abstammungs- und Vererbungslehre92 citations
Semantic Scholar
Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats
T. Wicker, A. Narechania, F. Sabot, J. Stein +4 more
2008BMC Genomics89 citations Open access
Semantic Scholar
Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima)
B. Nabholz, G. Sarah, F. Sabot, M. Ruiz +6 more
2014Molecular Ecology83 citations Open access
Semantic Scholar
Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data.
F. Sabot, N. Picault, Moaine El Baidouri, Christel Llauro +7 more
2011The Plant Journal73 citations Open access
Semantic Scholar
Identification of an active LTR retrotransposon in rice.
N. Picault, C. Chaparro, Benoı̂t Piégu, Willfried Stenger +8 more
2009The Plant Journal70 citations
Semantic Scholar
Intra‐individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?
N. Scarcelli, C. Mariac, T. Couvreur, A. Faye +4 more
2016Molecular Ecology Resources69 citations Open access
Semantic Scholar
Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae
A. Roulin, Benoı̂t Piégu, P. Fortune, F. Sabot +3 more
2009BMC Evolutionary Biology65 citations Open access
Semantic Scholar
Life without GAG: the BARE-2 retrotransposon as a parasite's parasite.
J. Tanskanen, F. Sabot, C. Vicient, A. Schulman
2007Gene61 citations
Semantic Scholar
A unified classification system for eukaryotic transposable elements should reflect their phylogeny.
T. Wicker, F. Sabot, A. Hua-Van, J. Bennetzen +9 more
200955 citations
Semantic Scholar
A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives
G. Sarah, Felix Homa, S. Pointet, Sandy Contreras +25 more
2017Molecular Ecology Resources51 citations Open access
Semantic Scholar
Fine mapping of RYMV3: a new resistance gene to Rice yellow mottle virus from Oryza glaberrima
Hélène Pidon, A. Ghesquière, Sophie Chéron, S. Issaka +5 more
2017Theoretical and Applied Genetics49 citations
Semantic Scholar
Evolutionary forces affecting synonymous variations in plant genomes
Yves Clément, G. Sarah, Y. Holtz, Felix Homa +28 more
2016bioRxiv44 citations Open access
Semantic Scholar
An extensive analysis of the African rice genetic diversity through a global genotyping
Julie Orjuela, F. Sabot, Sophie Chéron, Y. Vigouroux +5 more
2014Theoretical and Applied Genetics42 citations
Semantic Scholar
Characterization of rice farming systems, production constraints and determinants of adoption of improved varieties by smallholder farmers of the Republic of Benin
Y. L. Loko, C. Gbèmavo, G. Djedatin, E. Ewedje +5 more
2021Scientific Reports39 citations Open access
Semantic Scholar
A Transposon Story: From TE Content to TE Dynamic Invasion of Drosophila Genomes Using the Single-Molecule Sequencing Technology from Oxford Nanopore
Mourdas Mohamed, Nguyet Thi-Minh Dang, Yuki Ogyama, N. Burlet +11 more
2020Cells39 citations Open access
Semantic Scholar
Plant Pangenome: Impacts on Phenotypes and Evolution
C. Tranchant-Dubreuil, M. Rouard, F. Sabot
2019Annual Plant Reviews online39 citations Open access
Semantic Scholar
A universal classification of eukaryotic transposable elements implemented in Repbase
T. Wicker, F. Sabot, A. Hua-Van, J. Bennetzen +9 more
2008Nature reviews genetics34 citations
Semantic Scholar
Plant transposable elements, with an emphasis on grass species
F. Sabot, D. Simon, M. Bernard
2004Euphytica33 citations
Semantic Scholar
miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species
K. Ta, F. Sabot, H. Adam, Y. Vigouroux +5 more
2016Rice31 citations Open access
Semantic Scholar
Reply: A unified classification system for eukaryotic transposable elements should reflect their phylogeny
T. Wicker, F. Sabot, A. Hua-Van, J. Bennetzen +9 more
2009Nature reviews genetics31 citations
Semantic Scholar
Template switching can create complex LTR retrotransposon insertions in Triticeae genomes
F. Sabot, A. Schulman
2007BMC Genomics30 citations Open access
Semantic Scholar
DNA Methylation and Expression of the EgDEF1 Gene and Neighboring Retrotransposons in mantled Somaclonal Variants of Oil Palm
E. Jaligot, W. Y. Hooi, Emilie Debladis, F. Richaud +8 more
2014PLoS ONE29 citations Open access
Semantic Scholar
Panache: a web browser-based viewer for linearized pangenomes
Éloi Durant, F. Sabot, M. Conte, M. Rouard
2021bioRxiv26 citations Open access
Semantic Scholar
TOGGLE: toolbox for generic NGS analyses
Cécile Monat, C. Tranchant-Dubreuil, Ayité Kougbeadjo, Cédric Farcy +7 more
2015BMC Bioinformatics26 citations Open access
Semantic Scholar
Morgane, a new LTR retrotransposon group, and its subfamilies in wheats
F. Sabot, P. Sourdille, N. Chantret, M. Bernard
2006Genetica26 citations
Semantic Scholar
Chlorophyll fluorescence-based high-throughput phenotyping facilitates the genetic dissection of photosynthetic heat tolerance in African (Oryza glaberrima) and Asian (Oryza sativa) rice
Jordan K Robson, John N. Ferguson, L. McAusland, J. Atkinson +7 more
2023Journal of Experimental Botany25 citations Open access
Semantic Scholar
TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches
Mourdas Mohamed, F. Sabot, Marion Varoqui, B. Mugat +4 more
2022bioRxiv25 citations Open access
Semantic Scholar
Long‐fragment targeted capture for long‐read sequencing of plastomes
K. Bethune, C. Mariac, M. Couderc, N. Scarcelli +8 more
2018Applications in Plant Sciences25 citations Open access
Semantic Scholar
De Novo Assemblies of Three Oryza glaberrima Accessions Provide First Insights about Pan-Genome of African Rices
Cécile Monat, B. Pera, M. Ndjiondjop, Mounirou Sow +4 more
2016Genome Biology and Evolution25 citations Open access
Semantic Scholar
Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima
P. Cubry, Hélène Pidon, K. Ta, C. Tranchant-Dubreuil +11 more
2020Rice21 citations Open access
Semantic Scholar
On-Farm Management of Rice Diversity, Varietal Preference Criteria, and Farmers’ Perceptions of the African (Oryza glaberrima Steud.) Versus Asian Rice (Oryza sativa L.) in the Republic of Benin (West Africa): Implications for Breeding and Conservation
Y. L. Loko, E. Ewedje, A. Orobiyi, G. Djedatin +6 more
2021Economic Botany18 citations
Semantic Scholar
Contrasted Microcolinearity and Gene Evolution Within a Homoeologous Region of Wheat and Barley Species
N. Chantret, J. Salse, F. Sabot, A. Bellec +14 more
2008Journal of Molecular Evolution16 citations
Semantic Scholar
Editorial: Mobile Elements and Plant Genome Evolution, Comparative Analyzes and Computational Tools
R. Kalendar, F. Sabot, F. Rodríguez, G. Karlov +2 more
2021Frontiers in Plant Science14 citations Open access
Semantic Scholar
LTRclassifier: A website for fast structural LTR retrotransposons classification in plants
Cécile Monat, Ndomassi Tando, C. Tranchant-Dubreuil, F. Sabot
2016Mobile Genetic Elements14 citations Open access
Semantic Scholar
Rapid evolution of an RNA virus to escape recognition by a rice NLR immune receptor.
Mélia Bonnamy, A. Pinel-Galzi, Lucille Gorgues, V. Chalvon +10 more
2022New Phytologist13 citations Open access
Semantic Scholar
Advent of a New Retrotransposon Structure: The Long Form of the Veju Elements
F. Sabot, P. Sourdille, M. Bernard
2005Genetica13 citations
Semantic Scholar
On the importance of metadata when sharing and opening data
F. Sabot
2022BMC Genomic Data12 citations Open access
Semantic Scholar
DuplicationDetector, a light weight tool for duplication detection using NGS data
G. Djedatin, Cécile Monat, S. Engelen, F. Sabot
201711 citations Open access
Semantic Scholar
CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes
Julie Orjuela, Aurore Comte, Sébastien Ravel, F. Charriat +3 more
2021bioRxiv10 citations Open access
Semantic Scholar
TOGGLe, a flexible framework for easily building complex workflows and performing robust large-scale NGS analyses
C. Tranchant-Dubreuil, Sébastien Ravel, Cécile Monat, G. Sarah +6 more
2018bioRxiv10 citations Open access
Semantic Scholar
The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics
V. Guignon, Yann Hueber, M. Rouard, S. Bocs +25 more
201610 citations Open access
Semantic Scholar
Diversity of the Ty-1 copia retrotransposon Tos17 in rice (Oryza sativa L.) and the AA genome of the Oryza genus
J. Petit, Emmanuelle Bourgeois, Wilfried Stenger, M. Bès +7 more
2009Zeitschrift für Induktive Abstammungs- und Vererbungslehre10 citations
Semantic Scholar
Rice farmers’ perceptions and response to climate variability, and determinants of adaptation strategies in the Republic of Benin
C. Gbèmavo, Joelle Toffa, Cyrille Tchakpa, Y. L. Loko +5 more
2022International Journal of Climate Change Strategies and Management9 citations Open access
Semantic Scholar

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