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J. Aury · SciRah

Researcher profile · Semantic Scholar

J. Aury

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J. Aury — researcher profile on SciRah

h-index: 71
Works: 289
Citations: 33K

Most-cited papers

Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome
A. Zayed, J. Wainaina, Guillermo Domínguez-Huerta, É. Pelletier +28 more
2022Science207 citations Open access
Semantic Scholar
Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems.
F. Denoeud, Olivier Godfroy, C. Cruaud, S. Heesch +106 more
2024Cell89 citations Open access
Semantic Scholar
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
Ann M. Mc Cartney, G. Formenti, Alice Mouton, D. D. De Panis +199 more
2024bioRxiv68 citations Open access
Semantic Scholar
The genomic history and global expansion of domestic donkeys
E. Todd, Laure Tonasso-Calvière, Lorelei Chauvey, Stéphanie Schiavinato +45 more
2022Science65 citations Open access
Semantic Scholar
Widespread horse-based mobility arose around 2200 bce in Eurasia
P. Librado, Gaëtan Tressières, Lorelei Chauvey, A. Fages +137 more
2024Nature60 citations Open access
Semantic Scholar
Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean
C. Hochart, L. Paoli, H. Ruscheweyh, G. Salazar +37 more
2023Nature Communications60 citations Open access
Semantic Scholar
Origin and evolution of the triploid cultivated banana genome
Xiu-Xiu Li, Sheng Yu, Zhi-Hao Cheng, Xiao-Jun Chang +20 more
2023Nature Genetics53 citations Open access
Semantic Scholar
Interspecific introgression patterns reveal the origins of worldwide cultivated bananas in New Guinea.
G. Martin, A. Cottin, F. Baurens, K. Labadie +8 more
2022The Plant Journal45 citations Open access
Semantic Scholar
Early dispersal of domestic horses into the Great Plains and northern Rockies
W. Taylor, P. Librado, Mila Chief Joseph American Horse Hunska Tašunke Icu, Carlton Shield Chief Gover +85 more
2023Science44 citations Open access
Semantic Scholar
The banana genome hub: a community database for genomics in the Musaceae
G. Droc, G. Martin, V. Guignon, M. Summo +13 more
2022Horticulture Research41 citations Open access
Semantic Scholar
Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes.
Ferdinand Marlétaz, A. Couloux, J. Poulain, K. Labadie +42 more
2023Cell Genomics33 citations Open access
Semantic Scholar
Estimation of contemporary effective population size in plant populations: Limitations of genomic datasets
Roberta Gargiulo, V. Decroocq, S. González-Martínez, I. Paz‐Vinas +6 more
2024bioRxiv32 citations Open access
Semantic Scholar
Pervasive tandem duplications and convergent evolution shape coral genomes
B. Noël, F. Denoeud, A. Rouan, Carol Buitrago-López +42 more
2023Genome Biology30 citations Open access
Semantic Scholar
Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence
Nina Guérin, Marta Ciccarella, Elisa Flamant, P. Frémont +16 more
2022Communications Biology29 citations Open access
Semantic Scholar
Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition
Caroline Belser, J. Poulain, K. Labadie, F. Gavory +81 more
2022Scientific Data27 citations Open access
Semantic Scholar
Origin and evolutionary trajectories of brown algal sex chromosomes
Josué Barrera-Redondo, Agnieszka P. Lipinska, Peng-Fei Liu, Erica Dinatale +22 more
2024bioRxiv26 citations Open access
Semantic Scholar
Epigenomic and structural events preclude recombination in Brassica napus.
Franz Boideau, Gautier Richard, O. Coriton, V. Huteau +13 more
2022New Phytologist25 citations
Semantic Scholar
Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats
Ana Paula Zotta Mota, G. Koutsovoulos, L. Perfus-Barbeoch, Evelin Despot-Slade +14 more
2024Nature Communications24 citations Open access
Semantic Scholar
Unravelling genomic drivers of speciation in Musa through genome assemblies of wild banana ancestors
Guillaume Martin, Benjamin Istace, F. Baurens, Caroline Belser +16 more
2025Nature Communications19 citations Open access
Semantic Scholar
Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean
E. Armstrong, J. Lê-Hoang, Q. Carradec, J. Aury +37 more
2023Nature Communications19 citations Open access
Semantic Scholar
Genome sequences of four Ixodes species expands understanding of tick evolution
Alexandra Cerqueira de Araujo, B. Noël, A. Bretaudeau, K. Labadie +28 more
2024bioRxiv17 citations Open access
Semantic Scholar
Imputed genomes of historical horses provide insights into modern breeding
E. Todd, Aurore Fromentier, Richard F. E. Sutcliffe, Yvette Running Horse Collin +9 more
2023iScience16 citations Open access
Semantic Scholar
Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks
C. Rispe, C. Hervet, Nathalie de la Cotte, Romain Daveu +12 more
2022BMC Genomics15 citations Open access
Semantic Scholar
Shared pedigree relationships and transmission of unreduced gametes in cultivated banana
G. Martin, F. Baurens, K. Labadie, C. Hervouet +7 more
2023Annals of Botany12 citations Open access
Semantic Scholar
A Super‐Pangenome for Cultivated Citrus Reveals Evolutive Features During the Allopatric Phase of Their Reticulate Evolution
G. Droc, Delphine Giraud, Caroline Belser, K. Labadie +24 more
2024bioRxiv11 citations Open access
Semantic Scholar
Tracking population structure and phenology through time using ancient genomes from waterlogged white oak wood
S. Wagner, Andaine Seguin-Orlando, J. Leplé, Thibault Leroy +8 more
2023Molecular Ecology10 citations Open access
Semantic Scholar
Functional diversity of microbial eukaryotes in a meromictic lake: Coupling between metatranscriptomic and a trait-based approach.
Arthur Monjot, G. Bronner, Damien Courtine, Corinne Cruaud +10 more
2023Environmental Microbiology10 citations Open access
Semantic Scholar
DNA methylation-based profiling of horse archaeological remains for age-at-death and castration
Xue-Xue Liu, Andaine Seguin-Orlando, Lorelei Chauvey, Gaëtan Tressières +19 more
2023iScience9 citations Open access
Semantic Scholar
Oak stands along an elevation gradient have different molecular strategies for regulating bud phenology
G. Le-Provost, C. Lalanne, I. Lesur, J. Louvet +7 more
2023BMC Plant Biology9 citations Open access
Semantic Scholar
Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals
A. Rouan, Mélanie Pousse, Nadir Djerbi, Barbara Porro +47 more
2023Nature Communications9 citations Open access
Semantic Scholar
Gene expression and genetic divergence in oak species highlight adaptive genes to soil water constraints.
G. Le-Provost, B. Brachi, I. Lesur, C. Lalanne +6 more
2022Plant Physiology9 citations Open access
Semantic Scholar
Sex in the city: Uncovering sex-specific management of equine resources from prehistoric times to the Modern Period in France
B. Clavel, S. Lepetz, Lorelei Chauvey, Stéphanie Schiavinato +37 more
2022Journal of Archaeological Science: Reports9 citations Open access
Semantic Scholar
Sustainability insights from Late Pleistocene climate change and horse migration patterns.
Yvette Running Horse Collin, C. Bataille, Samantha Hershauer, Mila Hunska Tašunke Icu +51 more
2025Science8 citations Open access
Semantic Scholar
Dynamics of X chromosome hyper-expression and inactivation in male tissues during stick insect development
Jelisaveta Djordjevic, Patrick Tran Van, William Toubiana, Marjorie Labédan +8 more
2024bioRxiv8 citations Open access
Semantic Scholar
Plant Genetic Bases Associated With Microbiota Descriptors Shed Light Into a Novel Holobiont Generalist Genes Theory
L. Maillet, Manon Norest, Adam Kautsky, A. Geraci +13 more
2025Environmental Microbiology7 citations Open access
Semantic Scholar
On the way to diploidization and unexpected ploidy in the grass Sporobolus section Spartina mesopolyploids
A. Salmon, Yan Hao, Morgane Milin, O. Lima +11 more
2025Nature Communications7 citations Open access
Semantic Scholar
Straight from the Horse’s Mouth: Timing and Zoogeography of Domesticated Horse Arrivals in Mongolia and China
W. Honeychurch, Rong Fan, L. Rogers, Mark E. Hall +17 more
2025Journal of Archaeological Method and Theory7 citations
Semantic Scholar
Genomic evidence of a complex supergene system linking dispersal to social polymorphism.
Stefano Mona, Elise J. Gay, Antoine Taupenot, Joshua Ducancel +10 more
2025Current Biology6 citations Open access
Semantic Scholar
The Demographic History of Populations and Genomic Imprinting have Shaped the Transposon Patterns in Arabidopsis lyrata
Nélida Padilla‐García, Audrey Le Vève, Vojtěch Čermák, Ömer Iltas +5 more
2025Molecular biology and evolution6 citations Open access
Semantic Scholar
Biodiversity Genomics Europe (BGE) Project – Abridged Grant Proposal
D. Koureas, P. Beja, M. Blaxter, A. Böhne +65 more
2026Research Ideas and Outcomes5 citations Open access
Semantic Scholar
Emergent patterns of patchiness differ between physical and planktonic properties in the ocean
P. Gray, E. Boss, G. Bourdin, A. Bourdais +103 more
2025Nature Communications5 citations Open access
Semantic Scholar
Genome-wide association for agro-morphological traits in a triploid banana population with large chromosome rearrangements
Simon Rio, Lucile Toniutti, Frédéric Salmon, C. Hervouet +14 more
2024Horticulture Research5 citations Open access
Semantic Scholar
Life-cycle-related gene expression patterns in the brown algae
Pélagie Ratchinski, Olivier Godfroy, B. Noël, J. Aury +1 more
2025bioRxiv4 citations
Semantic Scholar
The evolutionary history and functional specialization of microRNA genes in Arabidopsis halleri and A. lyrata
Flavia Pavan, Jacinthe Azevedo Favory, Eléanore Lacoste, Chloé Beaumont +17 more
2024bioRxiv4 citations Open access
Semantic Scholar
LocoGSE, a sequence-based genome size estimator for plants
Pierre Guenzi-Tiberi, Benjamin Istace, I. Alsos, É. Coissac +3 more
2024Frontiers in Plant Science4 citations Open access
Semantic Scholar
Differential adaptation of the yeast Candida anglica to fermented food.
F. Bigey, Xavière Menatong Tene, M. Wessner, Martine Pradal +3 more
2024Food microbiology4 citations Open access
Semantic Scholar
The tiny germline chromosomes of Paramecium aurelia have an exceptionally high recombination rate and are capped by a new class of Helitrons
O. Arnaiz, Frédéric Guérin, Arnaud Couloux, Caridad Miró-Pina +23 more
2025bioRxiv3 citations Open access
Semantic Scholar
High altitude horse use and early horse transport in eastern Eurasia: New evidence from melting ice
W. Taylor, Isaac A. Hart, Tumurbaatar Tuvshinjargal, J. Bayarsaikhan +14 more
2024The Holocene3 citations
Semantic Scholar
Genome‐wide population affinities and signatures of adaptation in hydruntines, sussemiones and Asian wild asses
Jianfei Pan, Xue-Xue Liu, M. Baca, Laure Calvière-Tonasso +41 more
2024Molecular Ecology3 citations Open access
Semantic Scholar
Functional monocentricity with holocentric characteristics and chromosome-specific centromeres in a stick insect
William Toubiana, Z. Dumas, Patrick Tran Van, Darren J. Parker +10 more
2024bioRxiv3 citations
Semantic Scholar

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