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K. Shimizu · SciRah

Researcher profile · Semantic Scholar

K. Shimizu

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K. Shimizu — researcher profile on SciRah

h-index: 44
Works: 182
Citations: 6,736

Most-cited papers

Multiple wheat genomes reveal global variation in modern breeding
Sean Walkowiak, Liangliang Gao, Cécile Monat, G. Haberer +94 more
2020Nature773 citations Open access
Semantic Scholar
Estimating genomic diversity and population differentiation – an empirical comparison of microsatellite and SNP variation in Arabidopsis halleri
M. Fischer, C. Rellstab, Marianne Leuzinger, M. Roumet +4 more
2017BMC Genomics251 citations Open access
Semantic Scholar
Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism
P. Novikova, Nora Hohmann, Viktoria Nizhynska, T. Tsuchimatsu +17 more
2016Nature Genetics191 citations Open access
Semantic Scholar
Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species
F. Menardo, C. Praz, S. Wyder, R. Ben-David +12 more
2016Nature Genetics170 citations Open access
Semantic Scholar
Molecular basis of flowering under natural long-day conditions in Arabidopsis
Young-Hun Song, Akane Kubota, Michael S Kwon, Michael F. Covington +12 more
2018Nature Plants161 citations Open access
Semantic Scholar
Reference-guided de novo assembly approach improves genome reconstruction for related species
H. Lischer, K. Shimizu
2017BMC Bioinformatics127 citations Open access
Semantic Scholar
Gene duplication and genetic exchange drive the evolution of S-RNase-based self-incompatibility in Petunia
Ken-ichi Kubo, Timothy Paape, Masaomi Hatakeyama, T. Entani +6 more
2015Nature Plants117 citations Open access
Semantic Scholar
Multiple hybrid de novo genome assembly of finger millet, an orphan allotetraploid crop
Masaomi Hatakeyama, Sirisha Aluri, Mathi Thumilan Balachadran, Sajeevan Radha Sivarajan +13 more
2017DNA Research114 citations Open access
Semantic Scholar
Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology
R. Briskine, Timothy Paape, R. Shimizu-Inatsugi, T. Nishiyama +3 more
2017Molecular Ecology Resources111 citations Open access
Semantic Scholar
The Cardamine hirsuta genome offers insight into the evolution of morphological diversity
Xiang-Chao Gan, A. Hay, M. Kwantes, G. Haberer +27 more
2016Nature Plants105 citations Open access
Semantic Scholar
Plant adaptive radiation mediated by polyploid plasticity in transcriptomes
R. Shimizu-Inatsugi, A. Terada, Kyosuke Hirose, H. Kudoh +2 more
2017Molecular Ecology93 citations Open access
Semantic Scholar
Global genomic analyses of wheat powdery mildew reveal association of pathogen spread with historical human migration and trade
A. G. Sotiropoulos, Epifanía Arango-Isaza, T. Ban, Chiara Barbieri +19 more
2022Nature Communications68 citations Open access
Semantic Scholar
The Current Genomic Landscape of Western South America: Andes, Amazonia, and Pacific Coast
Chiara Barbieri, Rodrigo Barquera, Leonardo Arias, José R. Sandoval +13 more
2019Molecular biology and evolution63 citations Open access
Semantic Scholar
Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica
Timothy Paape, R. Briskine, Gwyneth Halstead-Nussloch, H. Lischer +7 more
2018Nature Communications57 citations Open access
Semantic Scholar
Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly
D. Frei, Elisabeth Veekman, D. Grogg, Ingrid Stoffel-Studer +7 more
2021Genome Biology and Evolution54 citations Open access
Semantic Scholar
Local adaptation (mostly) remains local: reassessing environmental associations of climate-related candidate SNPs in Arabidopsis halleri
C. Rellstab, M. Fischer, S. Zoller, R. Graf +5 more
2016Heredity52 citations Open access
Semantic Scholar
Polyploidy before and after domestication of crop species.
T. Akagi, Katharina Jung, K. Masuda, K. Shimizu
2022Current opinion in plant biology50 citations Open access
Semantic Scholar
Robustness and the generalist niche of polyploid species: Genome shock or gradual evolution?
K. Shimizu
2022Current opinion in plant biology49 citations Open access
Semantic Scholar
Exploring correlations in genetic and cultural variation across language families in northeast Asia
Hiromi Matsumae, Peter Ranacher, P. Savage, Damián E. Blasi +11 more
2019Science Advances45 citations Open access
Semantic Scholar
A stigmatic gene confers interspecies incompatibility in the Brassicaceae
Sota Fujii, T. Tsuchimatsu, Yuka Kimura, Shota Ishida +8 more
2019Nature Plants44 citations
Semantic Scholar
Conserved but Attenuated Parental Gene Expression in Allopolyploids: Constitutive Zinc Hyperaccumulation in the Allotetraploid Arabidopsis kamchatica
Timothy Paape, Masaomi Hatakeyama, R. Shimizu-Inatsugi, Teo Cereghetti +4 more
2016Molecular biology and evolution42 citations Open access
Semantic Scholar
Adaptive reduction of male gamete number in the selfing plant Arabidopsis thaliana
T. Tsuchimatsu, H. Kakui, Misako Yamazaki, Cindy Marona +10 more
2020Nature Communications41 citations Open access
Semantic Scholar
Homeolog expression quantification methods for allopolyploids
T. Kuo, Masaomi Hatakeyama, Toshiaki Tameshige, K. Shimizu +1 more
2018bioRxiv41 citations Open access
Semantic Scholar
Evolution of the Selfing Syndrome in Arabis alpina (Brassicaceae)
A. Tedder, S. Carleial, M. Gołębiewska, C. Kappel +2 more
2015PLoS ONE40 citations Open access
Semantic Scholar
Genomics meets remote sensing in global change studies: monitoring and predicting phenology, evolution and biodiversity
E. Yamasaki, F. Altermatt, J. Cavender-Bares, M. Schuman +10 more
201739 citations Open access
Semantic Scholar
Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana
Yasuhiro Sato, R. Shimizu-Inatsugi, Misako Yamazaki, K. Shimizu +1 more
2018BMC Plant Biology34 citations Open access
Semantic Scholar
De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium-Resistant Genes in East Asian Genotypes
K. Shimizu, D. Copetti, Moeko Okada, T. Wicker +29 more
2020Plant and Cell Physiology33 citations Open access
Semantic Scholar
Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes.
Y. Takeuchi, Samuel Chaffron, M. Salcher, R. Shimizu-Inatsugi +5 more
2015Systematic and Applied Microbiology33 citations Open access
Semantic Scholar
A global analysis of matches and mismatches between human genetic and linguistic histories
Chiara Barbieri, Damián E. Blasi, Epifanía Arango-Isaza, A. G. Sotiropoulos +7 more
2022Proceedings of the National Academy of Sciences of the United States of America32 citations Open access
Semantic Scholar
Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species
C. Rellstab, S. Zoller, C. Sailer, A. Tedder +5 more
2020Molecular Ecology30 citations Open access
Semantic Scholar
The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests
K. Ng, Masaki J. Kobayashi, Jeffrey A. Fawcett, Masaomi Hatakeyama +19 more
2021Communications Biology29 citations Open access
Semantic Scholar
Duplicated pollen–pistil recognition loci control intraspecific unilateral incompatibility in Brassica rapa
Yoshinobu Takada, K. Murase, H. Shimosato-Asano, Takahiro Sato +7 more
2017Nature Plants29 citations Open access
Semantic Scholar
The population genomic signature of environmental association and gene flow in an ecologically divergent tree species Metrosideros polymorpha (Myrtaceae)
A. Izuno, K. Kitayama, Y. Onoda, Yuki Tsujii +7 more
2017Molecular Ecology28 citations Open access
Semantic Scholar
Genetic diversity of two tropical tree species of the Dipterocarpaceae following logging and restoration in Borneo: high genetic diversity in plots with high species diversity
C. Ang, Michael J. O'Brien, K. Ng, Ping-Chin Lee +3 more
201628 citations Open access
Semantic Scholar
Fine‐scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species
Reiko Akiyama, Jian-Qiang Sun, Masaomi Hatakeyama, H. Lischer +9 more
2020New Phytologist25 citations Open access
Semantic Scholar
Using a two-stage convolutional neural network to rapidly identify tiny herbivorous beetles in the field
Hironori Takimoto, Yasuhiro Sato, A. Nagano, K. Shimizu +1 more
2021bioRxiv22 citations Open access
Semantic Scholar
Female sterility associated with increased clonal propagation suggests a unique combination of androdioecy and asexual reproduction in populations of Cardamine amara (Brassicaceae)
A. Tedder, M. Helling, J. Pannell, R. Shimizu-Inatsugi +4 more
2015Annals of Botany22 citations Open access
Semantic Scholar
The genetic history of the Southern Andes from present-day Mapuche ancestry.
Epifanía Arango-Isaza, M. Capodiferro, María José Aninao, Hiba Babiker +9 more
2023Current Biology21 citations Open access
Semantic Scholar
Genet assignment and population structure analysis in a clonal forest-floor herb, Cardamine leucantha, using RAD-seq
Michiaki Tsujimoto, Kiwako S. Araki, M. Honjo, Masaki Yasugi +7 more
2019AoB Plants19 citations Open access
Semantic Scholar
Genome sequencing of Metrosideros polymorpha (Myrtaceae), a dominant species in various habitats in the Hawaiian Islands with remarkable phenotypic variations
A. Izuno, Masaomi Hatakeyama, T. Nishiyama, I. Tamaki +4 more
2016Journal of plant research19 citations Open access
Semantic Scholar
A Natural Low Phytic Acid Finger Millet Accession Significantly Improves Iron Bioavailability in Indian Women
Bellam H. Rajashekar Reddy, P. Thankachan, M. Hatakayama, Netravati Hiremath +13 more
2022Frontiers in Nutrition18 citations Open access
Semantic Scholar
Agrobacterium-mediated floral dip transformation of the model polyploid species Arabidopsis kamchatica
Chow-Lih Yew, H. Kakui, K. Shimizu
2017Journal of plant research18 citations Open access
Semantic Scholar
Utility of commercial high‐resolution satellite imagery for monitoring general flowering in Sarawak, Borneo
T. Miura, Yuji Tokumoto, Na-Gai Shin, K. Shimizu +2 more
2023Ecological research17 citations Open access
Semantic Scholar
Experimental and Field Data Support Range Expansion in an Allopolyploid Arabidopsis Owing to Parental Legacy of Heavy Metal Hyperaccumulation
Timothy Paape, Reiko Akiyama, Teo Cereghetti, Yoshihiko Onda +3 more
2020Frontiers in Genetics17 citations Open access
Semantic Scholar
A Recently Formed Triploid Cardamine insueta Inherits Leaf Vivipary and Submergence Tolerance Traits of Parents
Jian-Qiang Sun, R. Shimizu-Inatsugi, Hugo Hofhuis, K. Shimizu +3 more
2020bioRxiv16 citations Open access
Semantic Scholar
Fermentation Ability of Gut Microbiota of Wild Japanese Macaques in the Highland and Lowland Yakushima: In Vitro Fermentation Assay and Genetic Analyses
G. Hanya, Janko Tackmann, A. Sawada, Wan-Yi Lee +14 more
2020Microbial Ecology14 citations Open access
Semantic Scholar
Multiple Wheat Genomes Reveal Novel Gli-2 Sublocus Location and Variation of Celiac Disease Epitopes in Duplicated α-Gliadin Genes
Gwyneth Halstead-Nussloch, Tsuyoshi Tanaka, D. Copetti, Timothy Paape +8 more
2021Frontiers in Plant Science13 citations Open access
Semantic Scholar
Neighbor GWAS: incorporating neighbor genotypic identity into genome-wide association studies of field herbivory
Yasuhiro Sato, Eiji Yamamoto, K. Shimizu, A. Nagano
2021Heredity13 citations Open access
Semantic Scholar
Transcriptional Variation in Glucosinolate Biosynthetic Genes and Inducible Responses to Aphid Herbivory on Field-Grown Arabidopsis thaliana
Yasuhiro Sato, Ayumi Tezuka, Makoto Kashima, A. Deguchi +4 more
2019bioRxiv13 citations Open access
Semantic Scholar
Integrative research efforts at the boundary of biodiversity and global change research
S. Abiven, F. Altermatt, N. Backhaus, Anna Deplazes‐Zemp +8 more
201711 citations Open access
Semantic Scholar

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