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J. Mudge · SciRah

Researcher profile · Semantic Scholar

J. Mudge

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J. Mudge — researcher profile on SciRah

h-index: 45
Works: 107
Citations: 9,024

Most-cited papers

The Medicago Genome Provides Insight into the Evolution of Rhizobial Symbioses
N. Young, F. Debelle, G. Oldroyd, R. Geurts +120 more
2011Nature1,246 citations Open access
Semantic Scholar
Carrier Testing for Severe Childhood Recessive Diseases by Next-Generation Sequencing
C. Bell, D. Dinwiddie, Neil A. Miller, Shannon Hateley +12 more
2011Science Translational Medicine660 citations Open access
Semantic Scholar
Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis
S. Baranzini, J. Mudge, J. V. van Velkinburgh, P. Khankhanian +25 more
2010Nature487 citations Open access
Semantic Scholar
Estimating genome conservation between crop and model legume species.
Hong-Kyu Choi, Jeong-Hwan Mun, Dongjin Kim, Hong-Yan Zhu +8 more
2004Proceedings of the National Academy of Sciences of the United States of America473 citations Open access
Semantic Scholar
Genome‐wide association genetics of an adaptive trait in lodgepole pine
T. Parchman, Z. Gompert, J. Mudge, Faye D. Schilkey +2 more
2012Molecular Ecology434 citations
Semantic Scholar
Dense sampling of bird diversity increases power of comparative genomics
Shaohong Feng, Josefin Stiller, Yuan Deng, J. Armstrong +146 more
2020Nature379 citations Open access
Semantic Scholar
C6/36 Aedes albopictus Cells Have a Dysfunctional Antiviral RNA Interference Response
D. Brackney, Jaclyn C. Scott, Fumihiko Sagawa, Jimmy E. Woodward +7 more
2010PLoS Neglected Tropical Diseases330 citations Open access
Semantic Scholar
A highly annotated whole-genome sequence of a Korean individual
Jong-Il Kim, Y. Ju, Hansoo Park, Sheehyun Kim +41 more
2009Nature329 citations Open access
Semantic Scholar
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes
S. Cannon, L. Sterck, S. Rombauts, Shusei Sato +23 more
2006Proceedings of the National Academy of Sciences of the United States of America318 citations Open access
Semantic Scholar
Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula
A. Branca, Timothy Paape, Peng Zhou, R. Briskine +13 more
2011Proceedings of the National Academy of Sciences of the United States of America234 citations Open access
Semantic Scholar
Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici
K. Lamour, J. Mudge, D. Gobena, Oscar P. Hurtado-Gonzales +31 more
2012Molecular Plant-Microbe Interactions231 citations Open access
Semantic Scholar
Distribution of Microsatellites in the Genome of Medicago truncatula: A Resource of Genetic Markers That Integrate Genetic and Physical Maps
Jeong-Hwan Mun, Dongjin Kim, Hong-Kyu Choi, J. Gish +10 more
2006Genetics192 citations
Semantic Scholar
Legume genomes: more than peas in a pod.
N. Young, J. Mudge, T. H. Noel Ellis
2003Current opinion in plant biology184 citations
Semantic Scholar
Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies
Masayuki Sugawara, B. Epstein, B. Badgley, T. Unno +17 more
2013Genome Biology173 citations Open access
Semantic Scholar
Candidate Genes and Genetic Architecture of Symbiotic and Agronomic Traits Revealed by Whole-Genome, Sequence-Based Association Genetics in Medicago truncatula
John Stanton-Geddes, Timothy Paape, B. Epstein, R. Briskine +13 more
2013PLoS ONE170 citations Open access
Semantic Scholar
Genome-wide association studies: progress and potential for drug discovery and development
S. Kingsmore, I. Lindquist, J. Mudge, D. Gessler +1 more
2008Nature reviews. Drug discovery148 citations Open access
Semantic Scholar
Meiosis-specific gene discovery in plants: RNA-Seq applied to isolated Arabidopsis male meiocytes
Chang-Bin Chen, A. Farmer, R. Langley, J. Mudge +5 more
2010BMC Plant Biology138 citations Open access
Semantic Scholar
Genomic Convergence Analysis of Schizophrenia: mRNA Sequencing Reveals Altered Synaptic Vesicular Transport in Post-Mortem Cerebellum
J. Mudge, Neil A. Miller, I. Khrebtukova, I. Lindquist +27 more
2008PLoS ONE125 citations Open access
Semantic Scholar
Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana
J. Mudge, S. Cannon, P. Kaló, G. Oldroyd +3 more
2005BMC Plant Biology106 citations Open access
Semantic Scholar
Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes
Peng Zhou, K. Silverstein, Thiruvarangan Ramaraj, J. Guhlin +9 more
2017BMC Genomics92 citations Open access
Semantic Scholar
Genome and evolution of the arbuscular mycorrhizal fungus Diversispora epigaea (formerly Glomus versiforme) and its bacterial endosymbionts.
Xue-Peng Sun, Wenbo Chen, S. Ivanov, A. MacLean +5 more
2018New Phytologist91 citations Open access
Semantic Scholar
Population Genomics of the Facultatively Mutualistic Bacteria Sinorhizobium meliloti and S. medicae
B. Epstein, A. Branca, J. Mudge, A. Bharti +6 more
2012PLoS Genetics91 citations Open access
Semantic Scholar
High-density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance to Aphanomyces euteiches.
Maxime Bonhomme, Olivier André, Yacine Badis, J. Ronfort +15 more
2014New Phytologist89 citations Open access
Semantic Scholar
High-resolution crossover mapping reveals similarities and differences of male and female recombination in maize
P. Kianian, Ming-Hui Wang, K. Simons, F. Ghavami +9 more
2018Nature Communications82 citations Open access
Semantic Scholar
Estimates of conserved microsynteny among the genomes of Glycine max, Medicago truncatula and Arabidopsis thaliana
H.-H. Yan, J. Mudge, Dongjin Kim, Dana Larsen +3 more
2003Theoretical and Applied Genetics81 citations
Semantic Scholar
Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes
Alexander Suh, Christopher C. Witt, J. Menger, Keren R. Sadanandan +7 more
2016Nature Communications78 citations Open access
Semantic Scholar
Management of High-Throughput DNA Sequencing Projects: Alpheus
Neil A. Miller, S. Kingsmore, A. Farmer, R. Langley +17 more
2008Journal of computer science and systems biology78 citations Open access
Semantic Scholar
Chromosome-Level Homeology in Paleopolyploid Soybean (Glycine max) Revealed Through Integration of Genetic and Chromosome Maps
J. Walling, R. Shoemaker, N. Young, J. Mudge +1 more
2006Genetics77 citations Open access
Semantic Scholar
Soybean genomic survey: BAC-end sequences near RFLP and SSR markers.
L. F. Marek, J. Mudge, Laura Darnielle, D. Grant +15 more
2001Genome75 citations
Semantic Scholar
Comparative physical mapping reveals features of microsynteny between Glycine max, Medicago truncatula, and Arabidopsis thaliana.
H.-H. Yan, J. Mudge, Dongjin Kim, Randy C. Shoemaker +2 more
2004Genome67 citations
Semantic Scholar
Comparisons of De Novo Transcriptome Assemblers in Diploid and Polyploid Species Using Peanut (Arachis spp.) RNA-Seq Data
Ratan Chopra, G. Burow, A. Farmer, J. Mudge +2 more
2014PLoS ONE62 citations Open access
Semantic Scholar
Hybrid assembly with long and short reads improves discovery of gene family expansions
J. Miller, Peng Zhou, J. Mudge, James Gurtowski +15 more
2017BMC Genomics60 citations Open access
Semantic Scholar
Novel Meiotic miRNAs and Indications for a Role of PhasiRNAs in Meiosis
Stefanie Dukowic-Schulze, A. Sundararajan, Thiruvarangan Ramaraj, S. Kianian +3 more
2016Frontiers in Plant Science59 citations Open access
Semantic Scholar
Databases and Information Integration for the Medicago truncatula Genome and Transcriptome1
S. Cannon, J. Crow, Michael L. Heuer, Xiaohong Wang +18 more
2005Plant Physiology59 citations Open access
Semantic Scholar
Phylogenetic signal variation in the genomes of Medicago (Fabaceae).
J. Yoder, R. Briskine, J. Mudge, A. Farmer +8 more
2013Systematic Biology58 citations Open access
Semantic Scholar
Transcriptome profiling of cytokinin and auxin regulation in tomato root
Sarika Gupta, Xiu-Ling Shi, I. Lindquist, Nicholas P. Devitt +2 more
2013Journal of Experimental Botany55 citations Open access
Semantic Scholar
The transcriptome landscape of early maize meiosis
Stefanie Dukowic-Schulze, A. Sundararajan, J. Mudge, Thiruvarangan Ramaraj +8 more
2014BMC Plant Biology52 citations Open access
Semantic Scholar
Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula
Karen M. Moll, Peng Zhou, Thiruvarangan Ramaraj, Diego A. Fajardo +8 more
2017BMC Genomics50 citations Open access
Semantic Scholar
Transcriptome Analysis of Cytokinin Response in Tomato Leaves
Xiu-Ling Shi, Sarika Gupta, I. Lindquist, Connor Cameron +2 more
2013PLoS ONE46 citations Open access
Semantic Scholar
Comparative genomic analysis of sequences sampled from a small region on soybean (Glycine max) molecular linkage group G.
D. Foster‐Hartnett, J. Mudge, Dana Larsen, D. Danesh +4 more
2002Genome45 citations
Semantic Scholar
Next-generation transcriptome sequencing, SNP discovery and validation in four market classes of peanut, Arachis hypogaea L.
Ratan Chopra, G. Burow, A. Farmer, J. Mudge +6 more
2015Zeitschrift für Induktive Abstammungs- und Vererbungslehre43 citations
Semantic Scholar
Comparative transcriptomics of early meiosis in Arabidopsis and maize.
Stefanie Dukowic-Schulze, A. Harris, Jun-Hua Li, A. Sundararajan +4 more
2014Journal of genetics and genomics = Yi chuan xue bao36 citations Open access
Semantic Scholar
Histone Citrullination Represses MicroRNA Expression, Resulting in Increased Oncogene mRNAs in Somatolactotrope Cells
Stanley B. DeVore, Coleman H. Young, Guang-Yuan Li, A. Sundararajan +6 more
2018Molecular and Cellular Biology31 citations Open access
Semantic Scholar
Characterization, correction and de novo assembly of an Oxford Nanopore genomic dataset from Agrobacterium tumefaciens
S. Deschamps, J. Mudge, Connor Cameron, Thiruvarangan Ramaraj +6 more
2016Scientific Reports30 citations Open access
Semantic Scholar
Comparative Genomics of an Unusual Biogeographic Disjunction in the Cotton Tribe (Gossypieae) Yields Insights into Genome Downsizing
C. Grover, M. Arick, Justin L. Conover, Adam Thrash +12 more
2017Genome Biology and Evolution27 citations Open access
Semantic Scholar
Soybean bacterial artificial chromosome contigs anchored with RFLPs: insights into genome duplication and gene clustering.
J. Mudge, Hui-Huang Yan, R. Denny, D. Howe +5 more
2004Genome26 citations
Semantic Scholar
Characterization of a set of novel meiotically-active promoters in Arabidopsis
Jun-Hua Li, A. Farmer, I. Lindquist, Stefanie Dukowic-Schulze +4 more
2012BMC Plant Biology25 citations Open access
Semantic Scholar
Experimental drought reduces genetic diversity in the grassland foundation species Bouteloua eriopoda
K. Whitney, J. Mudge, D. Natvig, A. Sundararajan +4 more
2019Oecologia22 citations Open access
Semantic Scholar
Gene Evolutionary Trajectories and GC Patterns Driven by Recombination in Zea mays
A. Sundararajan, Stefanie Dukowic-Schulze, M. Kwicklis, Kayla Engstrom +12 more
2016Frontiers in Plant Science22 citations Open access
Semantic Scholar
Pangenome-Wide Association Studies with Frequented Regions
Buwani Manuweera, J. Mudge, Indika Kahanda, B. Mumey +2 more
2019ACM International Conference on Bioinformatics, Computational Biology and Biomedicine21 citations Open access
Semantic Scholar

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