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J. Fresnedo-Ramírez · SciRah

Researcher profile · Semantic Scholar

J. Fresnedo-Ramírez

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J. Fresnedo-Ramírez — researcher profile on SciRah

h-index: 18
Works: 55
Citations: 932

Most-cited papers

A next-generation marker genotyping platform (AmpSeq) in heterozygous crops: a case study for marker-assisted selection in grapevine
Shan-Shan Yang, J. Fresnedo-Ramírez, Ming-Hui Wang, L. Cote +14 more
2016Horticulture Research84 citations Open access
Semantic Scholar
Genetic dissection of powdery mildew resistance in interspecific half-sib grapevine families using SNP-based maps
S. L. Teh, J. Fresnedo-Ramírez, M. Clark, D. Gadoury +3 more
2016Molecular breeding67 citations Open access
Semantic Scholar
Computational Analysis of AmpSeq Data for Targeted, High-Throughput Genotyping of Amplicons
J. Fresnedo-Ramírez, Shan-Shan Yang, Qi Sun, A. Karn +2 more
2019Frontiers in Plant Science63 citations Open access
Semantic Scholar
QTL mapping of pomological traits in peach and related species breeding germplasm
J. Fresnedo-Ramírez, M. Bink, E. van de Weg, T. Famula +5 more
2015Molecular breeding58 citations Open access
Semantic Scholar
Analysis of the first Taraxacum kok-saghyz transcriptome reveals potential rubber yield related SNPs
Zinan Luo, B. Iaffaldano, Xiaofeng Zhuang, J. Fresnedo-Ramírez +1 more
2017Scientific Reports56 citations Open access
Semantic Scholar
Next Generation Mapping of Enological Traits in an F2 Interspecific Grapevine Hybrid Family
Shan-Shan Yang, J. Fresnedo-Ramírez, Qi Sun, David C. Manns +7 more
2016PLoS ONE54 citations Open access
Semantic Scholar
Application of Genomic and Quantitative Genetic Tools to Identify Candidate Resistance Genes for Brown Rot Resistance in Peach
P. Martínez-García, D. Parfitt, R. Bostock, J. Fresnedo-Ramírez +4 more
2013PLoS ONE54 citations Open access
Semantic Scholar
QTL mapping and breeding value estimation through pedigree-based analysis of fruit size and weight in four diverse peach breeding programs
J. Fresnedo-Ramírez, T. Frett, Paul. J. Sandefur, Alejandra Salgado-Rojas +10 more
2016Tree Genetics & Genomes52 citations Open access
Semantic Scholar
Genotyping-by-sequencing of Brassica oleracea vegetables reveals unique phylogenetic patterns, population structure and domestication footprints
Zachary J. Stansell, K. Hyma, J. Fresnedo-Ramírez, Qi Sun +3 more
2018Horticulture Research41 citations Open access
Semantic Scholar
Diversity and distribution of genus Jatropha in Mexico
J. Fresnedo-Ramírez, Q. Orozco-Ramírez
2013Genetic Resources and Crop Evolution37 citations
Semantic Scholar
Discovery of the REN11 Locus From Vitis aestivalis for Stable Resistance to Grapevine Powdery Mildew in a Family Segregating for Several Unstable and Tissue-Specific Quantitative Resistance Loci
A. Karn, C. Zou, S. Brooks, J. Fresnedo-Ramírez +6 more
2021Frontiers in Plant Science27 citations Open access
Semantic Scholar
Effect prediction of identified SNPs linked to fruit quality and chilling injury in peach [Prunus persica (L.) Batsch]
P. Martínez-García, J. Fresnedo-Ramírez, D. Parfitt, T. Gradziel +1 more
2012Plant Molecular Biology27 citations
Semantic Scholar
Morphovariability of capulín (Prunus serotina Ehrh.) in the central-western region of Mexico from a plant genetic resources perspective
J. Fresnedo-Ramírez, S. Segura, A. Muratalla-Lúa
2011Genetic Resources and Crop Evolution25 citations Open access
Semantic Scholar
Whole-genome sequence and methylome profiling of the almond [Prunus dulcis (Mill.) D.A. Webb] cultivar ‘Nonpareil’
K. D’Amico-Willman, W. Z. Ouma, T. Meulia, G. Sideli +2 more
2021bioRxiv23 citations Open access
Semantic Scholar
Lessons from a Phenotyping Center Revealed by the Genome-Guided Mapping of Powdery Mildew Resistance Loci.
L. Cadle-Davidson, D. Gadoury, J. Fresnedo-Ramírez, Shan-Shan Yang +9 more
2016Phytopathology23 citations
Semantic Scholar
Genome-wide DNA-(de)methylation is associated with Noninfectious Bud-failure exhibition in Almond (Prunus dulcis [Mill.] D.A.Webb)
J. Fresnedo-Ramírez, H. Chan, D. Parfitt, C. Crisosto +1 more
2017Scientific Reports21 citations Open access
Semantic Scholar
Heterogeneity in the entire genome for three genotypes of peach [Prunus persica (L.) Batsch] as distinguished from sequence analysis of genomic variants
J. Fresnedo-Ramírez, P. Martínez-García, D. Parfitt, C. Crisosto +1 more
2013BMC Genomics19 citations Open access
Semantic Scholar
Impact of the Market on the Specialization and Competitiveness of Avocado Production in Mexico
J. M. Vargas-Canales, Guadalupe Carbajal-Flores, Tzatzil Isela Bustamante-Lara, Joaquín Huitzilihuitl Camacho-Vera +3 more
202018 citations
Semantic Scholar
Influence of year and genetic factors on chilling injury susceptibility in peach (Prunus persica (L.) Batsch)
P. Martínez-García, C. Peace, D. Parfitt, E. Ogundiwin +4 more
2012Euphytica17 citations
Semantic Scholar
The Floral Biology of Jatropha curcas L.—A Review
J. Fresnedo-Ramírez
2013Tropical Plant Biology15 citations
Semantic Scholar
Relative Telomere Length and Telomerase Reverse Transcriptase (TERT) Expression Are Associated with Age in Almond (Prunus dulcis [Mill.] D.A.Webb)
K. D’Amico-Willman, E. Anderson, T. Gradziel, J. Fresnedo-Ramírez
2021Plants14 citations Open access
Semantic Scholar
An integrative AmpSeq platform for highly multiplexed marker-assisted pyramiding of grapevine powdery mildew resistance loci
J. Fresnedo-Ramírez, Shan-Shan Yang, Qi Sun, L. Cote +9 more
2017Molecular breeding14 citations
Semantic Scholar
Inflorescence Development and Floral Organogenesis in Taraxacum kok-saghyz
C. Schuchovski, T. Meulia, B. F. Sant’Anna-Santos, J. Fresnedo-Ramírez
2020Plants12 citations Open access
Semantic Scholar
Variance, Inter-Trait Correlation, Heritability, and Marker-Trait Association of Rubber Yield-Related Characteristics in Taraxacum kok-saghyz
Zinan Luo, B. Iaffaldano, Xiaofeng Zhuang, J. Fresnedo-Ramírez +1 more
2018Plant Molecular Biology Reporter11 citations
Semantic Scholar
Morphological variation in black cherry (Prunus serotina Ehrh.) associated with environmental conditions in Mexico and the United States
Félix Alberto Guzmán, S. Segura, J. Fresnedo-Ramírez
2018Genetic Resources and Crop Evolution10 citations
Semantic Scholar
Science, technology, agri-food systems, health, and wellbeing: logic, dynamics, and relationships
J. M. Vargas-Canales, Sergio Orozco-Cirilo, Salvador Estrada, Perla Shiomara del Carpio Ovando +23 more
2024Frontiers in Sustainable Food Systems9 citations Open access
Semantic Scholar
Application of a Bayesian ordinal animal model for the estimation of breeding values for the resistance to Monilinia fruticola (G.Winter) Honey in progenies of peach [Prunus persica (L.) Batsch]
J. Fresnedo-Ramírez, T. Famula, T. Gradziel
2017Breeding Science9 citations Open access
Semantic Scholar
Analysis of a Multi-Environment Trial for Black Raspberry (Rubus occidentalis L.) Quality Traits
M. Willman, J. Bushakra, N. Bassil, C. Finn +8 more
2022Genes8 citations Open access
Semantic Scholar
Identification of Putative Markers of Non-infectious Bud Failure in Almond [Prunus dulcis (Mill.) D.A. Webb] Through Genome Wide DNA Methylation Profiling and Gene Expression Analysis in an Almond × Peach Hybrid Population
K. D’Amico-Willman, G. Sideli, B. Allen, E. Anderson +2 more
2022Frontiers in Plant Science8 citations Open access
Semantic Scholar
CRISPR/Cas9-mediated Targeted Mutagenesis of Inulin Biosynthesis in Rubber Dandelion
Menaka Ariyaratne, Nathaniel P. King-Smith, J. Fresnedo-Ramírez, D. J. Barker +1 more
2023J. Amer. Soc. Hort. Sci.7 citations Open access
Semantic Scholar
Identification of QTLs for berry acid and tannin in a Vitis aestivalis- derived 'Norton'-based population
Karlene L. Negus, Li-Ling Chen, J. Fresnedo-Ramírez, Heather Scott +3 more
20217 citations
Semantic Scholar
A review of plant epigenetics through the lens of almond
J. Fresnedo-Ramírez, E. Anderson, K. D’Amico-Willman, T. Gradziel
2023The Plant Genome6 citations Open access
Semantic Scholar
Integrated analysis of the methylome and transcriptome of twin almonds (Prunus dulcis [Mill.] D.A.Webb) reveals genomic features associated with non-infectious bud failure
K. D’Amico-Willman, Chad E. Niederhuth, M. Willman, T. Gradziel +3 more
2021bioRxiv5 citations Open access
Semantic Scholar
Reshaping the Tree of Life: ecological implications of evolution in the Anthropocene
K. Capps, S. Chapman, K. Clay, J. Fresnedo-Ramírez +1 more
2021Frontiers in Ecology and the Environment5 citations Open access
Semantic Scholar
Pedigree correction and estimation of breeding values for peach genetic improvement
J. Fresnedo-Ramírez, C. Crisosto, T. Gradziel, T. Famula
20155 citations
Semantic Scholar
Genomic prediction of phenological and fruit-quality traits in a multi-family Japanese plum breeding population
Paulina Ballesta, A. Fiol, Sebastián Ahumada, María Osorio +6 more
2025Horticultural Plant Journal4 citations Open access
Semantic Scholar
Hypermethylation and small RNA expression are associated with increased age in almond (Prunus dulcis [Mill.] D.A. Webb) accessions.
K. D’Amico-Willman, Chad E. Niederhuth, Michael G. Sovic, E. Anderson +2 more
2023Plant Science4 citations Open access
Semantic Scholar
Integrating genomics and multi-platform metabolomics enables metabolite QTL detection in breeding-relevant apple germplasm
E. A. Bilbrey, Kathryn Williamson, E. Hatzakis, D. Miller +2 more
2021bioRxiv4 citations Open access
Semantic Scholar
Specialization and competitiveness of natural rubber (Hevea brasiliensis [Willd. ex A. Juss.] Müll. Arg.) production in Mexico
J. M. Vargas-Canales, Joaquín Huitzilihuitl Camacho-Vera, J. Pineda-Pineda, V. M. Mendoza-Castillo +3 more
2019REVISTA CHAPINGO SERIE CIENCIAS FORESTALES Y DEL AMBIENTE3 citations Open access
Semantic Scholar
Identification of quantative trait loci (QTLs) for berry acid and tannin in a Vitis aestivalis-derived 'Norton'-based population
Karlene L. Negus, Li-Ling Chen, J. Fresnedo-Ramírez, H. A. Scott +3 more
2021Fruit Research2 citations Open access
Semantic Scholar
Influence of year and genetic factors on chilling injury susceptibility in peach (Prunus persica (L.) Batsch)
P. Martínez-García, C. Peace, D. Parfitt, E. Ogundiwin +4 more
2011Euphytica2 citations
Semantic Scholar
Epigenetic selection in almond breeding
T. Gradziel, J. Fresnedo-Ramírez
2018Acta Horticulturae1 citations
Semantic Scholar
QTL mapping of pomological traits in peach and related species breeding germplasm
J. Fresnedo-Ramírez, M. Bink, E. van de Weg, T. Famula +5 more
2015Molecular breeding1 citations Open access
Semantic Scholar
DNA methylation is conserved between vegetative propagules in almond ( Prunus dulcis Mill D.A. Webb)
W. Hazzard, J. Fresnedo-Ramírez, E. Anderson, P. Brown +1 more
2026European Journal of Horticultural Science0 citations Open access
Semantic Scholar
Floral Anatomy, Sporogenesis, and Gametogenesis in the Rubber Dandelion (Taraxacum kok-saghyz): Implications for Breeding and Crop Development
C. Schuchovski, T. Meulia, B. F. Sant’Anna-Santos, E. L. P. Nunes +1 more
2026Plants0 citations
Semantic Scholar
Whole-genome sequence and methylome profiling of the almond ( dulcis quality control tool for high throughput sequence
K. D’Amico-Willman, W. Z. Ouma, T. Meulia, G. Sideli +2 more
20210 citations
Semantic Scholar
Whole-genome sequence and methylome profiling of the almond ( dulcis quality control tool for high throughput sequence
K. D’Amico-Willman, W. Z. Ouma, T. Meulia, G. Sideli +2 more
20210 citations
Semantic Scholar
Telomere length and TERT expression are associated with age in almond (Prunus dulcis [Mill.] D.A.Webb)
K. D’Amico-Willman, E. Anderson, T. Gradziel, J. Fresnedo-Ramírez
2020bioRxiv0 citations Open access
Semantic Scholar
Morphological variation in black cherry (Prunus serotina Ehrh.) associated with environmental conditions in Mexico and the United States
Félix Alberto Guzmán, S. Segura, J. Fresnedo-Ramírez
2018Genetic Resources and Crop Evolution0 citations
Semantic Scholar
Variance, Inter-Trait Correlation, Heritability, and Marker-Trait Association of Rubber Yield-Related Characteristics in Taraxacum kok-saghyz
Zinan Luo, B. Iaffaldano, Xiaofeng Zhuang, J. Fresnedo-Ramírez +1 more
2018Plant Molecular Biology Reporter0 citations
Semantic Scholar

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