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T. Brutnell · SciRah

Researcher profile · Semantic Scholar

T. Brutnell

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T. Brutnell — researcher profile on SciRah

h-index: 57
Works: 151
Citations: 17K

Most-cited papers

Reference genome sequence of the model plant Setaria
J. Bennetzen, J. Schmutz, Hao Wang, Ryan J. Percifield +30 more
2012Nature Biotechnology850 citations Open access
Semantic Scholar
Advancing Crop Transformation in the Era of Genome Editing[OPEN]
F. Altpeter, N. Springer, L. Bartley, A. Blechl +16 more
2016The Plant Cell635 citations Open access
Semantic Scholar
The iPlant Collaborative: Cyberinfrastructure for Plant Biology
S. Goff, M. Vaughn, S. McKay, E. Lyons +61 more
2011Frontiers in Plant Science478 citations Open access
Semantic Scholar
Setaria viridis and Setaria italica, model genetic systems for the Panicoid grasses.
Pinghua Li, T. Brutnell
2011Journal of Experimental Botany333 citations Open access
Semantic Scholar
Standards for plant synthetic biology: a common syntax for exchange of DNA parts.
N. Patron, D. Orzáez, S. Marillonnet, H. Warzecha +54 more
2015New Phytologist272 citations Open access
Semantic Scholar
Comparative analyses of C4 and C3 photosynthesis in developing leaves of maize and rice
Lin Wang, Angelika Czedik-Eysenberg, Rachel A. Mertz, Yaqing Si +24 more
2014Nature Biotechnology267 citations
Semantic Scholar
Brachypodium as a Model for the Grasses: Today and the Future1[W]
J. Brkljačić, E. Grotewold, R. Scholl, T. Mockler +22 more
2011Plant Physiology265 citations Open access
Semantic Scholar
A Versatile Phenotyping System and Analytics Platform Reveals Diverse Temporal Responses to Water Availability in Setaria.
N. Fahlgren, Maximilian J. Feldman, Malia A. Gehan, Melinda S. Wilson +13 more
2015Molecular Plant255 citations Open access
Semantic Scholar
grassy tillers1 promotes apical dominance in maize and responds to shade signals in the grasses
C. Whipple, Tesfamichael H. Kebrom, Allison L. Weber, Fang Yang +6 more
2011Proceedings of the National Academy of Sciences of the United States of America251 citations Open access
Semantic Scholar
The maize W22 genome provides a foundation for functional genomics and transposon biology
N. Springer, Sarah N. Anderson, C. Andorf, K. Ahern +50 more
2018Nature Genetics199 citations Open access
Semantic Scholar
Precise insertion and guided editing of higher plant genomes using Cpf1 CRISPR nucleases
Matthew B. Begemann, Benjamin N. Gray, Emma E. January, G. Gordon +6 more
2017Scientific Reports166 citations Open access
Semantic Scholar
A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci
S. Mamidi, A. Healey, Pu Huang, J. Grimwood +19 more
2020Nature Biotechnology149 citations Open access
Semantic Scholar
Model-based clustering for RNA-seq data
Yaqing Si, Peng Liu, Pinghua Li, T. Brutnell
2014Bioinform.149 citations Open access
Semantic Scholar
A Low-Cost Library Construction Protocol and Data Analysis Pipeline for Illumina-Based Strand-Specific Multiplex RNA-Seq
Lin Wang, Yaqing Si, Lauren K. Dedow, Ying Shao +2 more
2011PLoS ONE148 citations Open access
Semantic Scholar
CRISPR-Cas12a (Cpf1): A Versatile Tool in the Plant Genome Editing Tool Box for Agricultural Advancement
A. Bandyopadhyay, Nagesh Kancharla, Vivek S. Javalkote, S. Dasgupta +1 more
2020Frontiers in Plant Science131 citations Open access
Semantic Scholar
Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses.
T. Brutnell, J. Bennetzen, J. Vogel
2015Annual Review of Plant Biology113 citations
Semantic Scholar
Grasses suppress shoot-borne roots to conserve water during drought
J. Sebastian, Muh-Ching Yee, Willian Goudinho Viana, R. Rellán-Álvarez +10 more
2016Proceedings of the National Academy of Sciences of the United States of America106 citations Open access
Semantic Scholar
Identification of the Pr1 Gene Product Completes the Anthocyanin Biosynthesis Pathway of Maize
Mandeep Sharma, M. Cortes-Cruz, K. Ahern, M. McMullen +2 more
2011Genetics98 citations Open access
Semantic Scholar
An N-acetylglucosamine transporter required for arbuscular mycorrhizal symbioses in rice and maize
Marina Nadal, Ruairidh J. H. Sawers, Shamoon Naseem, B. Bassin +13 more
2017Nature Plants86 citations Open access
Semantic Scholar
A Limited Role for Carbonic Anhydrase in C4 Photosynthesis as Revealed by a ca1ca2 Double Mutant in Maize1[W][OPEN]
Anthony J. Studer, A. Gandin, A. Kolbe, Lin Wang +2 more
2014Plant Physiology84 citations Open access
Semantic Scholar
Genetic Control and Comparative Genomic Analysis of Flowering Time in Setaria (Poaceae)
Margarita Mauro-Herrera, Xuewen Wang, H. Barbier, T. Brutnell +2 more
2013G3: Genes, Genomes, Genetics82 citations Open access
Semantic Scholar
Developmental dynamics of Kranz cell transcriptional specificity in maize leaf reveals early onset of C4-related processes
S. L. Tausta, Pinghua Li, Yaqing Si, Neeru Gandotra +4 more
2014Journal of Experimental Botany80 citations Open access
Semantic Scholar
Bundle sheath suberization in grass leaves: multiple barriers to characterization.
Rachel A. Mertz, T. Brutnell
2014Journal of Experimental Botany71 citations Open access
Semantic Scholar
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
A. Sreedasyam, C. Plott, M. Hossain, J. Lovell +60 more
2023Nucleic Acids Research62 citations Open access
Semantic Scholar
Genome-Wide Association of Carbon and Nitrogen Metabolism in the Maize Nested Association Mapping Population1[OPEN]
Neng-Yi Zhang, Y. Gibon, Jason G. Wallace, N. Lepak +9 more
2015Plant Physiology61 citations Open access
Semantic Scholar
Time dependent genetic analysis links field and controlled environment phenotypes in the model C4 grass Setaria
Max J. Feldman, Rachel E. Paul, Darshi Banan, Jennifer F Barrett +8 more
2016bioRxiv60 citations Open access
Semantic Scholar
Sparse panicle1 is required for inflorescence development in Setaria viridis and maize
Pu Huang, Hui Jiang, Chuan-Mei Zhu, K. Barry +6 more
2017Nature Plants59 citations Open access
Semantic Scholar
Setaria viridis as a Model for C 4 Photosynthesis
C. P. Coelho, Huang Pu, T. Brutnell
201758 citations
Semantic Scholar
Identification of Photosynthesis-Associated C4 Candidate Genes through Comparative Leaf Gradient Transcriptome in Multiple Lineages of C3 and C4 Species
Ze-Hong Ding, Sarit Weissmann, Ming-Hui Wang, Bai-Juan Du +8 more
2015PLoS ONE58 citations Open access
Semantic Scholar
Climate-smart crops with enhanced photosynthesis.
C. Jansson, J. Vogel, S. Hazen, T. Brutnell +1 more
2018Journal of Experimental Botany54 citations
Semantic Scholar
Regulatory mechanisms underlying C4 photosynthesis.
Lin Wang, R. Peterson, T. Brutnell
2011New Phytologist54 citations
Semantic Scholar
Setaria viridis as a Model System to Advance Millet Genetics and Genomics
Pu Huang, C. Shyu, C. P. Coelho, Ying-Ying Cao +1 more
2016Frontiers in Plant Science52 citations Open access
Semantic Scholar
Transcriptome response of cassava leaves under natural shade
Ze-Hong Ding, Yang Zhang, Yi Xiao, Fangfang Liu +8 more
2016Scientific Reports52 citations Open access
Semantic Scholar
Making Roots, Shoots, and Seeds: IDD Gene Family Diversification in Plants.
C. P. Coelho, Pu Huang, Dong-Yeon Lee, T. Brutnell
2018Trends in Plant Science47 citations Open access
Semantic Scholar
Cross species selection scans identify components of C4 photosynthesis in the grasses
Pu Huang, Anthony J. Studer, James C. Schnable, E. Kellogg +1 more
2016Journal of Experimental Botany47 citations Open access
Semantic Scholar
Growth-defence balance in grass biomass production: the role of jasmonates.
C. Shyu, T. Brutnell
2015Journal of Experimental Botany47 citations
Semantic Scholar
Enhancing the productivity of grasses under high-density planting by engineering light responses: from model systems to feedstocks.
Sankalpi N. Warnasooriya, T. Brutnell
2014Journal of Experimental Botany45 citations Open access
Semantic Scholar
Interactions of C4 Subtype Metabolic Activities and Transport in Maize Are Revealed through the Characterization of DCT2 Mutants[OPEN]
Sarit Weissmann, Fang-Fang Ma, Koki Furuyama, J. Gierse +5 more
2016The Plant Cell44 citations Open access
Semantic Scholar
The draft genome of the C3 panicoid grass species Dichanthelium oligosanthes
Anthony J. Studer, James C. Schnable, Sarit Weissmann, A. Kolbe +5 more
2016Genome Biology42 citations Open access
Semantic Scholar
Genome-wide association study of carbon and nitrogen metabolism in the maize nested association mapping population
Neng-Yi Zhang, Y. Gibon, N. Lepak, Pinghua Li +9 more
2014bioRxiv38 citations Open access
Semantic Scholar
Metabolomics of sorghum roots during nitrogen stress reveals compromised metabolic capacity for salicylic acid biosynthesis
A. Sheflin, D. Chiniquy, C. Yuan, E. Goren +10 more
2019Plant Direct36 citations Open access
Semantic Scholar
Carbonic Anhydrase Mutants in Zea mays Have Altered Stomatal Responses to Environmental Signals1
A. Kolbe, T. Brutnell, A. Cousins, Anthony J. Studer
2018Plant Physiology35 citations Open access
Semantic Scholar
Comparative feedstock analysis in Setaria viridis L. as a model for C4 bioenergy grasses and Panicoid crop species
Carloalberto Petti, A. Shearer, Mizuki Tateno, Matthew Ruwaya +3 more
2013Frontiers in Plant Science34 citations Open access
Semantic Scholar
Methods for Performing Crosses in Setaria viridis, a New Model System for the Grasses
Hui Jiang, H. Barbier, T. Brutnell
2013Journal of Visualized Experiments34 citations Open access
Semantic Scholar
Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses
Jacob D. Washburn, James C. Schnable, G. Conant, T. Brutnell +5 more
2017Scientific Reports32 citations Open access
Semantic Scholar
The rhizosphere and cropping system, but not arbuscular mycorrhizae, affect ammonia oxidizing archaea and bacteria abundances in two agricultural soils
Cassandra J. Wattenburger, J. Gutknecht, Quan Zhang, T. Brutnell +2 more
202031 citations Open access
Semantic Scholar
SHORT ROOT and INDETERMINATE DOMAIN family members govern PIN-FORMED expression to regulate minor vein differentiation in rice.
Qiming Liu, Shouzhen Teng, Chen Deng, Suting Wu +9 more
2023The Plant Cell30 citations Open access
Semantic Scholar
Model grasses hold key to crop improvement
T. Brutnell
2015Nature Plants30 citations
Semantic Scholar
A synthesis of transcriptomic surveys to dissect the genetic basis of C4 photosynthesis.
Pu Huang, T. Brutnell
2016Current opinion in plant biology27 citations Open access
Semantic Scholar
Engineering chloroplast development in rice through cell‐specific control of endogenous genetic circuits
Dong-Yeon Lee, Lei Hua, R. Khoshravesh, R. Giuliani +5 more
2021Plant Biotechnology Journal26 citations Open access
Semantic Scholar

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