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M. Feldgarden · SciRah

Researcher profile · Semantic Scholar

M. Feldgarden

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M. Feldgarden — researcher profile on SciRah

h-index: 33
Works: 64
Citations: 24K

Most-cited papers

Structure, Function and Diversity of the Healthy Human Microbiome
C. Huttenhower, D. Gevers, R. Knight, Sahar Abubucker +244 more
2012Nature11K citations Open access
Semantic Scholar
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.
B. Haas, D. Gevers, A. Earl, M. Feldgarden +11 more
2011Genome Research3,356 citations Open access
Semantic Scholar
A framework for human microbiome research
B. Methé, K. Nelson, Mihai Pop, H. Creasy +244 more
2012Nature2,439 citations Open access
Semantic Scholar
AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence
M. Feldgarden, V. Brover, N. González-Escalona, J. Frye +8 more
2021Scientific Reports1,549 citations Open access
Semantic Scholar
Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates
M. Feldgarden, V. Brover, D. Haft, A. Prasad +13 more
2019Antimicrobial Agents and Chemotherapy1,239 citations Open access
Semantic Scholar
A Catalog of Reference Genomes from the Human Microbiome
K. Nelson, G. Weinstock, S. Highlander, K. Worley +79 more
2010Science720 citations Open access
Semantic Scholar
Database resources of the National Center for Biotechnology Information in 2023
E. Sayers, Evan E. Bolton, J. Brister, Kathi Canese +28 more
2022Nucleic Acids Res.351 citations Open access
Semantic Scholar
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species
C. Luo, S. Walk, D. Gordon, M. Feldgarden +2 more
2011Proceedings of the National Academy of Sciences of the United States of America341 citations Open access
Semantic Scholar
Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of E. gallinarum and E. casseliflavus
Kelli L. Palmer, P. Godfrey, A. Griggs, V. Kos +10 more
2012mBio330 citations Open access
Semantic Scholar
Evaluation of 16S rDNA-Based Community Profiling for Human Microbiome Research
D. Ward, D. Gevers, G. Giannoukos, A. Earl +63 more
2012PLoS ONE295 citations Open access
Semantic Scholar
Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011
Y. Grad, M. Lipsitch, M. Feldgarden, Harindra M. Arachchi +30 more
2012Proceedings of the National Academy of Sciences of the United States of America290 citations Open access
Semantic Scholar
The Genomic Diversification of the Whole Acinetobacter Genus: Origins, Mechanisms, and Consequences
M. Touchon, J. Cury, Eun-Jeong Yoon, L. Křížová +10 more
2014Genome Biology and Evolution259 citations Open access
Semantic Scholar
Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus
P. McAdam, K. Templeton, G. Edwards, M. Holden +15 more
2012Proceedings of the National Academy of Sciences of the United States of America205 citations Open access
Semantic Scholar
Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics
Stephen B. Beres, Ronan K. Carroll, Patrick R. Shea, I. Sitkiewicz +14 more
2010Proceedings of the National Academy of Sciences of the United States of America171 citations Open access
Semantic Scholar
Comparative Genomics of Vancomycin-Resistant Staphylococcus aureus Strains and Their Positions within the Clade Most Commonly Associated with Methicillin-Resistant S. aureus Hospital-Acquired Infection in the United States
V. Kos, Christopher A. Desjardins, A. Griggs, G. Cerqueira +13 more
2012mBio154 citations Open access
Semantic Scholar
Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes.
S. Partridge, V. di Pilato, Y. Doi, M. Feldgarden +12 more
2018Journal of Antimicrobial Chemotherapy109 citations Open access
Semantic Scholar
Selection footprint in the FimH adhesin shows pathoadaptive niche differentiation in Escherichia coli.
E. Sokurenko, M. Feldgarden, E. Trintchina, Scott J. Weissman +4 more
2004Molecular biology and evolution104 citations
Semantic Scholar
High-Quality Draft Genome Sequences of 28 Enterococcus sp. Isolates
Kelli L. Palmer, K. Carniol, Janet M. Manson, David I. Heiman +7 more
2010Journal of Bacteriology94 citations Open access
Semantic Scholar
Phylogenomic Classification and the Evolution of Clonal Complex 5 Methicillin-Resistant Staphylococcus aureus in the Western Hemisphere
L. Challagundla, J. Reyes, I. Rafiqullah, D. Sordelli +14 more
2018Frontiers in Microbiology90 citations Open access
Semantic Scholar
Identification of 50 Class D β-Lactamases and 65 Acinetobacter-Derived Cephalosporinases in Acinetobacter spp
B. Périchon, S. Goussard, Violaine Walewski, L. Křížová +7 more
2013Antimicrobial Agents and Chemotherapy83 citations Open access
Semantic Scholar
A Standard Numbering Scheme for Class C β-Lactamases
Andrew R. Mack, M. D. Barnes, M. Taracila, A. Hujer +24 more
2019Antimicrobial Agents and Chemotherapy75 citations Open access
Semantic Scholar
Using the NCBI AMRFinder Tool to Determine Antimicrobial Resistance Genotype-Phenotype Correlations Within a Collection of NARMS Isolates
M. Feldgarden, V. Brover, D. Haft, A. Prasad +13 more
2019bioRxiv62 citations Open access
Semantic Scholar
Curation of the AMRFinderPlus databases: applications, functionality and impact
M. Feldgarden, V. Brover, B. Fedorov, D. Haft +2 more
2022Microbial Genomics60 citations Open access
Semantic Scholar
Whole-genome Comparison of Urinary Pathogenic Escherichia coli and Faecal Isolates of UTI Patients and Healthy Controls
K. L. Nielsen, M. Stegger, Kristoffer Kiil, P. Godfrey +4 more
2017International Journal of Medical Microbiology58 citations Open access
Semantic Scholar
Gradual evolution in bacteria: evidence from Bacillus systematics.
M. Feldgarden, N. Byrd, F. Cohan
2003Microbiology57 citations Open access
Semantic Scholar
THE PHENOTYPIC AND FITNESS EFFECTS OF COLICIN RESISTANCE IN ESCHERICHIA COLI K‐12
M. Feldgarden, M. Riley
1999Evolution; international journal of organic evolution55 citations
Semantic Scholar
Genomics of Corynebacterium striatum, an emerging multi-drug resistant pathogen of immunocompromised patients
Kathleen Nudel, Xiaomin Zhao, Sankha S. Basu, Xiaoxi Dong +5 more
2018Clinical Microbiology and Infection49 citations Open access
Semantic Scholar
The ecology and evolution of antibiotic-resistant bacteria
Carl T. Bergstrom, M. Feldgarden
200749 citations
Semantic Scholar
HIGH LEVELS OF COLICIN RESISTANCE IN ESCHERICHIA COLI
M. Feldgarden, M. Riley
1998Evolution; international journal of organic evolution45 citations
Semantic Scholar
Allorecognition in Colonial Marine Invertebrates: Does Selection Favor Fusion with Kin of Fusion with Self?
M. Feldgarden, Philip O. Yund
1992The Biological Bulletin43 citations Open access
Semantic Scholar
Standardized Metadata for Human Pathogen/Vector Genomic Sequences
V. Dugan, S. Emrich, Gloria I. Giraldo-Calderón, O. Harb +54 more
2014PLoS ONE38 citations Open access
Semantic Scholar
Haplotype Diversity in “Source-Sink” Dynamics of Escherichia coli Urovirulence
S. Chattopadhyay, M. Feldgarden, Scott J. Weissman, D. Dykhuizen +2 more
2007Journal of Molecular Evolution38 citations
Semantic Scholar
Whole-Genome Sequences of 94 Environmental Isolates of Bacillus cereus Sensu Lato
G. A. Van der Auwera, M. Feldgarden, R. Kolter, J. Mahillon
2013Genome Announcements34 citations Open access
Semantic Scholar
Selection of Unique Escherichia coli Clones by Random Amplified Polymorphic DNA (RAPD): Evaluation by Whole Genome Sequencing
K. L. Nielsen, P. Godfrey, M. Stegger, P. Andersen +2 more
2014Journal of Microbiological Methods33 citations Open access
Semantic Scholar
Staphylococcal enterotoxin P predicts bacteremia in hospitalized patients colonized with methicillin-resistant Staphylococcus aureus.
M. Calderwood, Christopher A. Desjardins, G. Sakoulas, R. Nicol +9 more
2014Journal of Infectious Diseases31 citations Open access
Semantic Scholar
Candidate targets of balancing selection in the genome of Staphylococcus aureus.
Jonathan C. Thomas, P. Godfrey, M. Feldgarden, D. A. Robinson
2012Molecular biology and evolution29 citations Open access
Semantic Scholar
Rapid Proliferation of Historecognition Alleles in Populations of a Colonial Ascidian
P. Yund, M. Feldgarden
199227 citations
Semantic Scholar
Consensus on β-Lactamase Nomenclature
P. Bradford, R. Bonomo, K. Bush, A. Carattoli +10 more
2022Antimicrobial Agents and Chemotherapy25 citations Open access
Semantic Scholar
Can phage defence maintain colicin plasmids in Escherichia coli?
M. Feldgarden, Shelley Golden, H. Wilson, M. Riley
1995Microbiology22 citations Open access
Semantic Scholar
hAMRonization: Enhancing antimicrobial resistance prediction using the PHA4GE AMR detection specification and tooling
Inês Mendes, Emma Griffiths, Alexander Manuele, D. Fornika +37 more
2024bioRxiv20 citations Open access
Semantic Scholar
Adaptation of Escherichia coli Traversing From the Faecal Environment to the Urinary Tract
K. L. Nielsen, M. Stegger, P. Godfrey, M. Feldgarden +2 more
2016International Journal of Medical Microbiology20 citations Open access
Semantic Scholar
Erratum for Feldgarden et al., “Validating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolates”
M. Feldgarden, V. Brover, D. Haft, A. Prasad +13 more
2020Antimicrobial Agents and Chemotherapy16 citations Open access
Semantic Scholar
Draft Genome Sequences of Staphylococcus aureus Sequence Type 34 (ST34) and ST42 Hybrids
Jonathan C. Thomas, P. Godfrey, M. Feldgarden, D. A. Robinson
2012Journal of Bacteriology15 citations Open access
Semantic Scholar
SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA.
M. Feldgarden, Daniel M. Stoebel, Dustin Brisson, D. Dykhuizen
2003Ecology15 citations Open access
Semantic Scholar
Comment on: Resistance gene naming and numbering: is it a new gene or not?
G. Jacoby, R. Bonomo, P. Bradford, K. Bush +10 more
2016Journal of Antimicrobial Chemotherapy11 citations Open access
Semantic Scholar
Evaluation of bacterial ribosomal RNA (rRNA) depletion methods for sequencing microbial community transcriptomes
Dawn M. Ciulla, G. Giannoukos, A. Earl, M. Feldgarden +7 more
2010Genome Biology11 citations Open access
Semantic Scholar
Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications
Ruth E. E. Timme, I. Karsch-Mizrachi, Zahra Waheed, Masanori Arita +20 more
2023Microbial Genomics7 citations Open access
Semantic Scholar
Resistance in Reservoirs and Human Commensals
M. Feldgarden
20102 citations
Semantic Scholar
Integrating Susceptibility Data from Two Surveillance Programs with Unique Methodological Techniques: The Antibiogram Resistance Method or Isolate-Based Resistance Monitoring (ARMOR) Study Group
B. Epstein, J. Gums, Phil Turner, M. Feldgarden +1 more
20072 citations
Semantic Scholar
Cefquinome: when Regulation Collides with Biology
M. Feldgarden
20072 citations
Semantic Scholar

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