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C. Luo · SciRah

Researcher profile · Semantic Scholar

C. Luo

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C. Luo — researcher profile on SciRah

h-index: 25
Works: 42
Citations: 8,888

Most-cited papers

The treatment-naïve microbiome in new-onset Crohn’s disease
D. Gevers, S. Kugathasan, L. Denson, Y. Vázquez-Baeza +28 more
2014Cell Host and Microbe3,008 citations Open access
Semantic Scholar
Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation
K. Atarashi, W. Suda, C. Luo, T. Kawaguchi +22 more
2017Science869 citations Open access
Semantic Scholar
Indoleacrylic acid produced by commensal Peptostreptococcus species suppresses inflammation
M. Wlodarska, C. Luo, R. Kolde, Eva d’Hennezel +18 more
2017Cell Host and Microbe799 citations Open access
Semantic Scholar
Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics
R. Poretsky, L. Rodriguez-R., C. Luo, D. Tsementzi +1 more
2014PLoS ONE640 citations Open access
Semantic Scholar
MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences
C. Luo, L. Rodriguez-R., K. Konstantinidis
2014Nucleic Acids Research543 citations Open access
Semantic Scholar
Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
C. Luo, D. Tsementzi, N. Kyrpides, Timothy D. Read +1 more
2012PLoS ONE478 citations Open access
Semantic Scholar
Gut microbiome function predicts response to anti-integrin biologic therapy in Inflammatory Bowel diseases
A. Ananthakrishnan, C. Luo, V. Yajnik, H. Khalili +4 more
2017Cell Host and Microbe430 citations Open access
Semantic Scholar
Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming
Kai Xue, M. Yuan, Z. Shi, Yu-Jia Qin +15 more
2016341 citations
Semantic Scholar
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species
C. Luo, S. Walk, D. Gordon, M. Feldgarden +2 more
2011Proceedings of the National Academy of Sciences of the United States of America341 citations Open access
Semantic Scholar
ConStrains identifies microbial strains in metagenomic datasets
C. Luo, R. Knight, H. Siljander, M. Knip +2 more
2015Nature Biotechnology243 citations Open access
Semantic Scholar
Metagenomic Insights into the Evolution, Function, and Complexity of the Planktonic Microbial Community of Lake Lanier, a Temperate Freshwater Ecosystem
Seungdae Oh, A. Caro-Quintero, D. Tsementzi, Natasha DeLeón-Rodriguez +3 more
2011Applied and Environmental Microbiology160 citations Open access
Semantic Scholar
Individual genome assembly from complex community short-read metagenomic datasets
C. Luo, D. Tsementzi, N. Kyrpides, K. Konstantinidis
2011The ISME Journal136 citations Open access
Semantic Scholar
Soil Microbial Community Responses to a Decade of Warming as Revealed by Comparative Metagenomics
C. Luo, L. Rodriguez-R., E. Johnston, Li-You Wu +15 more
2013Applied and Environmental Microbiology131 citations Open access
Semantic Scholar
Paneth cell defects in Crohn's disease patients promote dysbiosis.
Ta-Chiang Liu, Bhaskar Gurram, Megan T. Baldridge, R. Head +17 more
2016JCI Insight120 citations Open access
Semantic Scholar
Biofilms on Hospital Shower Hoses: Characterization and Implications for Nosocomial Infections
M. J. Soto-Girón, L. Rodriguez-R., C. Luo, M. Elk +4 more
2016Applied and Environmental Microbiology82 citations Open access
Semantic Scholar
Antigen Discovery and Specification of Immunodominance Hierarchies for MHCII-Restricted Epitopes
D. Graham, C. Luo, Daniel J. O'Connell, A. Lefkovith +9 more
2018Nature Medicine76 citations Open access
Semantic Scholar
Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem
E. Johnston, L. Rodriguez-R., C. Luo, M. Yuan +7 more
2016Frontiers in Microbiology68 citations Open access
Semantic Scholar
Iterative Subtractive Binning of Freshwater Chronoseries Metagenomes Identifies over 400 Novel Species and their Ecologic Preferences.
L. Rodriguez-R., D. Tsementzi, C. Luo, K. Konstantinidis
2020Environmental Microbiology62 citations Open access
Semantic Scholar
Metagenomics of Two Severe Foodborne Outbreaks Provides Diagnostic Signatures and Signs of Coinfection Not Attainable by Traditional Methods
A. Huang, C. Luo, A. Pena-Gonzalez, M. Weigand +2 more
2016Applied and Environmental Microbiology62 citations Open access
Semantic Scholar
Genome reannotation of Escherichia coli CFT073 with new insights into virulence
C. Luo, Gang-Qing Hu, Huaiqiu Zhu
2009BMC Genomics59 citations Open access
Semantic Scholar
A user's guide to quantitative and comparative analysis of metagenomic datasets.
C. Luo, L. Rodriguez-R., K. Konstantinidis
2013Methods in Enzymology36 citations
Semantic Scholar
Evaluation of metatranscriptomic protocols and application to the study of freshwater microbial communities.
D. Tsementzi, R. Poretsky, L. Rodriguez-R., C. Luo +1 more
2014Environmental Microbiology Reports33 citations
Semantic Scholar
Stability, genotypic and phenotypic diversity of Shewanella baltica in the redox transition zone of the Baltic Sea.
Jie Deng, I. Brettar, C. Luo, Jennifer M. Auchtung +4 more
2014Environmental Microbiology31 citations
Semantic Scholar
The Bacterial Symbionts of Closely Related Hydrothermal Vent Snails With Distinct Geochemical Habitats Show Broad Similarity in Chemoautotrophic Gene Content
R. Beinart, C. Luo, K. Konstantinidis, F. Stewart +1 more
2019Frontiers in Microbiology30 citations Open access
Semantic Scholar
Profiling lateral gene transfer events in the human microbiome using WAAFLE
Tiffany Y Hsu, Etienne Nzabarushimana, D. Wong, C. Luo +5 more
2025Nature Microbiology26 citations
Semantic Scholar
Photosynthetic characteristics, soil nutrients, and their interspecific competitions in an apple–soybean alley cropping system subjected to different drip fertilizer regimes on the Loess Plateau, China
C. Luo, Ruo-Shui Wang, Chao-Nan Li, Chenghao Zheng +1 more
2023Agricultural Water Management21 citations Open access
Semantic Scholar
Model-based Comparisons of the Abundance Dynamics of Bacterial Communities in Two Lakes
P. Dam, L. Rodriguez-R., C. Luo, J. Hatt +3 more
2020Scientific Reports19 citations Open access
Semantic Scholar
Phosphorus-related gene content is similar in Prochlorococcus populations from the North Pacific and North Atlantic Oceans
C. Luo, K. Konstantinidis
2011Proceedings of the National Academy of Sciences of the United States of America18 citations Open access
Semantic Scholar
Correction: Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
C. Luo, D. Tsementzi, N. Kyrpides, Timothy D. Read +1 more
2012PLoS ONE15 citations Open access
Semantic Scholar
Profiling novel lateral gene transfer events in the human microbiome
Tiffany Y. Hsu, Etienne Nzabarushimana, D. Wong, C. Luo +5 more
2023bioRxiv8 citations Open access
Semantic Scholar
Iterative Subtractive Binning of Freshwater Chronoseries Metagenomes Identifies of over Four Hundred Novel Species and their Ecologic Preferences
L. Rodriguez-R., D. Tsementzi, C. Luo, K. Konstantinidis
20196 citations Open access
Semantic Scholar
O-011 Paneth Cell Phenotypes Define a Subtype of Pediatric Crohn's Disease Through Alterations in Host-Microbial Interactions
Ta-Chiang Liu, Bhaskar Gurram, Megan T. Baldridge, R. Head +16 more
2016Inflammatory Bowel Diseases6 citations
Semantic Scholar
Genomic Sequencing and Other Tools for Studying Microbial Communities: Genomics and “meta'omic” tools are enabling us to explore the microbiome from three complementary perspectives–taxonomic, functional, and ecological
Emma H. Schwager, C. Luo, C. Huttenhower, X. Morgan
20153 citations
Semantic Scholar
850a The treatment-naive microbiome in early-onset Crohn's Disease
D. Gevers, S. Kugathasan, L. Denson, Y. Vázquez-Baeza +28 more
20142 citations
Semantic Scholar
Digital DNA Nanostructures for Ultrasensitive Multiplexed Heavy Metal Sensing via Nanopore Platforms
Zhan Wang, Rui Hu, C. Luo, Yufei Li +8 more
2026Advanced Functional Materials1 citations
Semantic Scholar
Preparation and Detection of Designed DNA Carriers for Nanopore Sensing.
Yaxian Liu, C. Luo, Ran Ji, Yufei Li +4 more
2026Methods in molecular biology0 citations
Semantic Scholar
Photosynthetic Characteristics, Soil Nutrients, and Their Interactions in an Apple-Soybean Alley Cropping System Subjected to Different Drip Fertilizer Regimes on the Loess Plateau, China
C. Luo, Ruo-Shui Wang, Chao-Nan Li, Chenghao Zheng +1 more
2022Social Science Research Network0 citations Open access
Semantic Scholar
Peer Review #2 of "imGLAD: accurate detection and quantification of target organisms in metagenomes (v0.2)"
J. Castro, L. Rodriguez-R., William T. Harvey, M. Weigand +121 more
20180 citations Open access
Semantic Scholar
Oral Session I 10 : 15 AM-12 : 30 PM Saturday March 12 McClung Auditorium 10 : 00 AM – Coffee Break 10 : 15 AM 1 : Metabolic Pathways Of Hydrocarbon-degrading Bacteria From The Deepwater Horizon Oil Spill
E. Johnston, Luis M. Rodriguez, C. Luo, M. Yuan +14 more
20160 citations
Semantic Scholar
Title Stability , genotypic and phenotypic diversity of Shewanella baltica in the redox transition zone of the Baltic Sea Permalink
Jie Deng, I. Brettar, C. Luo, Jennifer M. Auchtung +4 more
20140 citations
Semantic Scholar
in the
Jie Deng, I. Brettar, C. Luo, Jennifer M. Auchtung +4 more
20140 citations
Semantic Scholar
Development of algorithms for metagenomics and applications to the study of evolutionary processes that maintain microbial biodiversity
C. Luo
20120 citations
Semantic Scholar

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