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Daniel M. Stoebel · SciRah

Researcher profile · Semantic Scholar

Daniel M. Stoebel

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Daniel M. Stoebel — researcher profile on SciRah

h-index: 15
Works: 32
Citations: 1,492

Most-cited papers

Selecting between‐sample RNA‐Seq normalization methods from the perspective of their assumptions
Ciaran Evans, J. Hardin, Daniel M. Stoebel
2016Briefings Bioinform.307 citations Open access
Semantic Scholar
Anti-silencing: overcoming H-NS-mediated repression of transcription in Gram-negative enteric bacteria.
Daniel M. Stoebel, A. Free, C. Dorman
2008Microbiology275 citations Open access
Semantic Scholar
The Cost of Expression of Escherichia coli lac Operon Proteins Is in the Process, Not in the Products
Daniel M. Stoebel, A. Dean, D. Dykhuizen
2008Genetics236 citations Open access
Semantic Scholar
Compensatory Evolution of Gene Regulation in Response to Stress by Escherichia coli Lacking RpoS
Daniel M. Stoebel, K. Hokamp, Michael S. Last, C. Dorman
2009PLoS Genetics101 citations Open access
Semantic Scholar
Diminishing-returns epistasis decreases adaptability along an evolutionary trajectory
Andrea Wünsche, Duy M. Dinh, R. Satterwhite, C. Arenas +2 more
2017Nature Ecology &Evolution98 citations
Semantic Scholar
DNA supercoiling is differentially regulated by environmental factors and FIS in Escherichia coli and Salmonella enterica
Andrew D. S. Cameron, Daniel M. Stoebel, C. Dorman
2011Molecular Microbiology93 citations Open access
Semantic Scholar
The genome-wide transcriptional response to varying RpoS levels in Escherichia coli K-12
Garrett T. Wong, R. Bonocora, Alicia N. Schep, Suzannah M. Beeler +10 more
2016bioRxiv72 citations Open access
Semantic Scholar
Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness
Yinhua Wang, Carolina Diaz Arenas, Daniel M. Stoebel, K. Flynn +7 more
2016Proceedings of the National Academy of Sciences of the United States of America47 citations Open access
Semantic Scholar
The Effect of Mobile Element IS10 on Experimental Regulatory Evolution in Escherichia coli
Daniel M. Stoebel, C. Dorman
2010Molecular biology and evolution47 citations Open access
Semantic Scholar
One Contribution to a Special Feature on 'experimental Evolution' Organized by Genetic Background Affects Epistatic Interactions between Two Beneficial Mutations
T. Cooper, Paul D. Sniegowski, Thomas Bataillon, Paul Joyce +3 more
46 citations
Semantic Scholar
Redefining the H-NS protein family: a diversity of specialized core and accessory forms exhibit hierarchical transcriptional network integration
S. Fitzgerald, S. C. Kary, Ebtihal Y Alshabib, Keith D. MacKenzie +3 more
2020Nucleic Acids Research33 citations Open access
Semantic Scholar
Lack of evidence for horizontal transfer of the lac operon into Escherichia coli.
Daniel M. Stoebel
2005Molecular biology and evolution29 citations
Semantic Scholar
Escherichia coli Lacking RpoS Are Rare in Natural Populations of Non-Pathogens
E. Snyder, D. Gordon, Daniel M. Stoebel
2012G3: Genes, Genomes, Genetics24 citations Open access
Semantic Scholar
Jewish Tradition and the Challenge of Darwinism.
Daniel M. Stoebel
200716 citations Open access
Semantic Scholar
SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA.
M. Feldgarden, Daniel M. Stoebel, Dustin Brisson, D. Dykhuizen
2003Ecology15 citations Open access
Semantic Scholar
Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12
Garrett T. Wong, R. Bonocora, Alicia N. Schep, Suzannah M. Beeler +10 more
2017Journal of Bacteriology12 citations Open access
Semantic Scholar
The timing of transcription of RpoS-dependent genes varies across multiple stresses in Escherichia coli K-12
Josephine Adams, Johnson Hoang, Emily Petroni, Ethan Ashby +2 more
2023bioRxiv11 citations Open access
Semantic Scholar
xenoGI: reconstructing the history of genomic island insertions in clades of closely related bacteria
E. Bush, A. E. Clark, Carissa A. DeRanek, A. Eng +7 more
2017BMC Bioinformatics9 citations Open access
Semantic Scholar
History in the Education of Scientists: Encouraging Judgment and Social Action
Vivien Hamilton, Daniel M. Stoebel
2020Isis5 citations Open access
Semantic Scholar
Analysis of Phylogenetics and Evolution with R.Use R!ByEmmanuel Paradis.New York: Springer.$49.95 (paper). xii + 211 p; ill.; index. ISBN: 0‐387‐32914‐5. 2006.
Daniel M. Stoebel
20075 citations
Semantic Scholar
The transcriptional response to low temperature is weakly conserved across the Enterobacteriaceae
Johnson Hoang, Daniel M. Stoebel
2024bioRxiv3 citations Open access
Semantic Scholar
Cra and cAMP Receptor Protein Have Opposing Roles in the Regulation of fruB in Vibrio cholerae
Christina M. Beck, Sayde Perry, Daniel M. Stoebel, Jane M. Liu
2021Journal of Bacteriology3 citations Open access
Semantic Scholar
Waste and yet want not.
Daniel M. Stoebel, D. Dykhuizen
2010Molecules and Cells2 citations Open access
Semantic Scholar
Human body temperature cues widespread changes in virulence gene expression in uropathogenic Escherichia coli
C. Dehner, Isidora N. Stankovic, Madeleine Sutherland, Lou Ann Bierwert +4 more
2025Infection and Immunity1 citations Open access
Semantic Scholar
The transcriptional response of genes to RpoS concentration in Escherichia coli is not determined by core promoter sequences
Suzannah M. Beeler, C. Doering, S. Tran, Daniel M. Stoebel
20191 citations Open access
Semantic Scholar
Differential expression analysis for multiple conditions
Ciaran Evans, J. Hardin, M. Huber, Daniel M. Stoebel +1 more
20141 citations
Semantic Scholar
A Long-tailed Jaeger in Yolo County
Daniel M. Stoebel
2026Central Valley Birds0 citations
Semantic Scholar
Cra and cAMP Receptor Protein Have Opposing Roles in the Regulation of <italic toggle='yes'>fruB</italic> in <named-content content-type='genus-species'>Vibrio cholerae</named-content>
Christina M. Beck, Sayde Perry, Daniel M. Stoebel, Jane M. Liua
20210 citations
Semantic Scholar
Erratum for Beck et al., “Cra and cAMP Receptor Protein Have Opposing Roles in the Regulation of fruB in Vibrio cholerae”
C. Beck, Sayde Perry, Daniel M. Stoebel, Jane M. Liu
2021Journal of Bacteriology0 citations Open access
Semantic Scholar
Review of Jewish Tradition and the Challenge of Darwinism, Geoffery Cantor and Marc Swetlitz, eds.
Daniel M. Stoebel
20070 citations
Semantic Scholar
Jewish Tradition and the Challenge of Darwinism.Edited byGeoffrey Cantorand, Marc Swetlitz. Chicago (Illinois): University of Chicago Press.$60.00 (hardcover); $24.00 (paper). xii + 260 p; ill.; index. ISBN: 0‐226‐09276‐3 (hc); 0‐226‐09277‐1 (pb). 2006.
Daniel M. Stoebel
20070 citations
Semantic Scholar
Review of Analysis of Phylogenetics and Evolution with R by Emmanuel Paradis
Daniel M. Stoebel
20070 citations
Semantic Scholar

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