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É. Bapteste · SciRah

Researcher profile · Semantic Scholar

É. Bapteste

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É. Bapteste — researcher profile on SciRah

h-index: 41
Works: 130
Citations: 6,239

Most-cited papers

Networks: expanding evolutionary thinking.
É. Bapteste, L. van Iersel, A. Janke, S. Kelchner +7 more
2013Trends in Genetics215 citations Open access
Semantic Scholar
Chimeric origins of ochrophytes and haptophytes revealed through an ancient plastid proteome
R. Dorrell, G. Gile, G. Mccallum, R. Méheust +6 more
2017eLife119 citations Open access
Semantic Scholar
Local Mobile Gene Pools Rapidly Cross Species Boundaries To Create Endemicity within Global Vibrio cholerae Populations
Y. Boucher, O. Cordero, Alison F. Takemura, D. Hunt +5 more
2011mBio114 citations Open access
Semantic Scholar
Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution
Eduardo Corel, P. Lopez, R. Méheust, É. Bapteste
2016Trends in Microbiology104 citations Open access
Semantic Scholar
Microbial Dark Matter Investigations: How Microbial Studies Transform Biological Knowledge and Empirically Sketch a Logic of Scientific Discovery
Guillaume Bernard, J. Pathmanathan, R. Lannes, P. Lopez +1 more
2018Genome Biology and Evolution90 citations Open access
Semantic Scholar
Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems.
F. Denoeud, Olivier Godfroy, C. Cruaud, S. Heesch +106 more
2024Cell89 citations Open access
Semantic Scholar
The public goods hypothesis for the evolution of life on Earth
J. McInerney, D. Pisani, É. Bapteste, M. J. O'Connell
2011Biology Direct84 citations Open access
Semantic Scholar
Divergent genomic trajectories predate the origin of animals and fungi
Eduard Ocaña-Pallarés, T. Williams, David López-Escardó, A. Arroyo +6 more
2022Nature80 citations Open access
Semantic Scholar
Evolutionary analyses of non-genealogical bonds produced by introgressive descent
É. Bapteste, P. Lopez, F. Bouchard, F. Baquero +2 more
2012Proceedings of the National Academy of Sciences of the United States of America76 citations Open access
Semantic Scholar
Towards a processual microbial ontology
É. Bapteste, J. Dupré
2012Biology & Philosophy74 citations Open access
Semantic Scholar
Gene similarity networks provide tools for understanding eukaryote origins and evolution
David Alvarez-Ponce, P. Lopez, É. Bapteste, J. McInerney
2013Proceedings of the National Academy of Sciences of the United States of America67 citations Open access
Semantic Scholar
Evaluating Phylogenetic Congruence in the Post-Genomic Era
J. Leigh, F. Lapointe, P. Lopez, É. Bapteste
2011Genome Biology and Evolution63 citations Open access
Semantic Scholar
Some considerations for analyzing biodiversity using integrative metagenomics and gene networks
L. Bittner, S. Halary, C. Payri, C. Cruaud +3 more
2010Biology Direct59 citations Open access
Semantic Scholar
EGN: a wizard for construction of gene and genome similarity networks
S. Halary, J. McInerney, P. Lopez, É. Bapteste
2013BMC Evolutionary Biology54 citations Open access
Semantic Scholar
Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms
Dominik Forster, L. Bittner, Slim Karkar, M. Dunthorn +5 more
2015BMC Biology50 citations Open access
Semantic Scholar
Using Sequence Similarity Networks to Identify Partial Cognates in Multilingual Wordlists
Johann-Mattis List, P. Lopez, É. Bapteste
2016Annual Meeting of the Association for Computational Linguistics49 citations
Semantic Scholar
A Pluralistic Account of Homology: Adapting the Models to the Data
Leanne Haggerty, Pierre-Alain Jachiet, W. Hanage, D. Fitzpatrick +6 more
2013Molecular biology and evolution49 citations Open access
Semantic Scholar
Protein networks identify novel symbiogenetic genes resulting from plastid endosymbiosis
R. Méheust, Ehud Zelzion, D. Bhattacharya, P. Lopez +1 more
2016Proceedings of the National Academy of Sciences of the United States of America47 citations Open access
Semantic Scholar
Let them fall where they may: congruence analysis in massive phylogenetically messy data sets.
J. Leigh, K. Schliep, P. Lopez, É. Bapteste
2011Molecular biology and evolution45 citations Open access
Semantic Scholar
Bipartite Network Analysis of Gene Sharings in the Microbial World
Eduardo Corel, R. Méheust, A. K. Watson, J. McInerney +2 more
2018Molecular biology and evolution41 citations Open access
Semantic Scholar
Epistemological impacts of horizontal gene transfer on classification in microbiology.
É. Bapteste, Y. Boucher
2009Methods in molecular biology41 citations
Semantic Scholar
Harvesting evolutionary signals in a forest of prokaryotic gene trees.
K. Schliep, P. Lopez, F. Lapointe, É. Bapteste
2011Molecular biology and evolution39 citations Open access
Semantic Scholar
Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution
R. Méheust, A. K. Watson, F. Lapointe, R. Papke +2 more
2018Genome Biology38 citations Open access
Semantic Scholar
Studying Genome Heterogeneity within the Arbuscular Mycorrhizal Fungal Cytoplasm
E. Boon, S. Halary, É. Bapteste, Mohamed Hijri
2015Genome Biology and Evolution35 citations Open access
Semantic Scholar
MosaicFinder: identification of fused gene families in sequence similarity networks
Pierre-Alain Jachiet, Romain Pogorelcnik, Anne Berry, P. Lopez +1 more
2013Bioinform.34 citations Open access
Semantic Scholar
Towards a Dynamic Interaction Network of Life to unify and expand the evolutionary theory
É. Bapteste, P. Huneman
2018BMC Biology33 citations Open access
Semantic Scholar
Unity and disunity in evolutionary sciences: process-based analogies open common research avenues for biology and linguistics
Johann-Mattis List, J. Pathmanathan, P. Lopez, É. Bapteste
2016Biology Direct33 citations Open access
Semantic Scholar
Extensive Gene Remodeling in the Viral World: New Evidence for Nongradual Evolution in the Mobilome Network
Pierre-Alain Jachiet, P. Colson, P. Lopez, É. Bapteste
2014Genome Biology and Evolution33 citations Open access
Semantic Scholar
Beyond arbitrium: identification of a second communication system in Bacillus phage phi3T that may regulate host defense mechanisms
Charles Bernard, Yan-Yan Li, P. Lopez, É. Bapteste
2020The ISME Journal32 citations Open access
Semantic Scholar
On the need for integrative phylogenomics, and some steps toward its creation
É. Bapteste, R. Burian
201032 citations
Semantic Scholar
Of woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coli
Julie Beauregard-Racine, C. Bicep, K. Schliep, P. Lopez +2 more
2011Biology Direct31 citations Open access
Semantic Scholar
Carbon Fixation by Marine Ultrasmall Prokaryotes
Romain Lannes, K. Olsson-Francis, P. Lopez, É. Bapteste
2019Genome Biology and Evolution30 citations Open access
Semantic Scholar
Formation of chimeric genes with essential functions at the origin of eukaryotes
R. Méheust, D. Bhattacharya, J. Pathmanathan, J. McInerney +2 more
2018BMC Biology21 citations Open access
Semantic Scholar
Sequence similarity network reveals the imprints of major diversification events in the evolution of microbial life
Shu Cheng, Slim Karkar, É. Bapteste, N. Yee +2 more
2014Frontiers in Ecology and Evolution21 citations Open access
Semantic Scholar
CompositeSearch: A Generalized Network Approach for Composite Gene Families Detection
J. Pathmanathan, P. Lopez, F. Lapointe, É. Bapteste
2017Molecular biology and evolution20 citations Open access
Semantic Scholar
Clanistics: a multi-level perspective for harvesting unrooted gene trees.
F. Lapointe, P. Lopez, Y. Boucher, J. Koenig +1 more
2010Trends in Microbiology20 citations
Semantic Scholar
Networks Consolidate the Core Concepts of Evolution by Natural Selection.
F. Papale, Jordane Saget, É. Bapteste
2019Trends in Microbiology19 citations Open access
Semantic Scholar
The leaderless communication peptide (LCP) class of quorum-sensing peptides is broadly distributed among Firmicutes
Shifu Aggarwal, Elaine Huang, Hackwon Do, Nishanth Makthal +5 more
2023Nature Communications17 citations Open access
Semantic Scholar
Proximate Drivers of Population-Level Lizard Gut Microbial Diversity: Impacts of Diet, Insularity, and Local Environment
Virginie Lemieux-Labonté, Chloé Vigliotti, Z. Tadic, Beck A. Wehrle +5 more
2022Microorganisms17 citations Open access
Semantic Scholar
Modeling the evolution of interconnected processes: It is the song and the singers
É. Bapteste, F. Papale
2020Bioessays16 citations Open access
Semantic Scholar
Highly divergent ancient gene families in metagenomic samples are compatible with additional divisions of life
P. Lopez, S. Halary, É. Bapteste
2015Biology Direct16 citations Open access
Semantic Scholar
Identification of a Marine Cyanophage in a Protist Single‐cell Metagenome Assembly
D. Bhattacharya, Dana C. Price, C. Bicep, É. Bapteste +3 more
2013Journal of Phycology16 citations
Semantic Scholar
Transcriptional landscape of the cell cycle in a model thermoacidophilic archaeon reveals similarities to eukaryotes
Miguel V. Gomez-Raya-Vilanova, Jérôme Teulière, Sofia Medvedeva, Yuping Dai +10 more
2025Nature Communications15 citations Open access
Semantic Scholar
Interactomics: Dozens of Viruses, Co-evolving With Humans, Including the Influenza A Virus, may Actively Distort Human Aging
J. Teulière, Charles Bernard, Hugo Bonnefous, Johannes Martens +2 more
2023Molecular biology and evolution15 citations Open access
Semantic Scholar
Network analyses unveil ageing-associated pathways evolutionarily conserved from fungi to animals
J. Teulière, Charles Bernard, Eduardo Corel, F. Lapointe +3 more
2022GeroScience15 citations Open access
Semantic Scholar
Rich Repertoire of Quorum Sensing Protein Coding Sequences in CPR and DPANN Associated with Interspecies and Interkingdom Communication
Charles Bernard, R. Lannes, Yan-Yan Li, É. Bapteste +1 more
2020mSystems15 citations Open access
Semantic Scholar
Vowel purity and rhyme evidence in Old Chinese reconstruction
Johann-Mattis List, J. Pathmanathan, N. Hill, É. Bapteste +1 more
201715 citations Open access
Semantic Scholar
The origins of microbial adaptations: how introgressive descent, egalitarian evolutionary transitions and expanded kin selection shape the network of life
É. Bapteste
2014Frontiers in Microbiology15 citations Open access
Semantic Scholar
Philosophy and evolution: minding the gap between evolutionary patterns and tree-like patterns.
É. Bapteste, F. Bouchard, R. Burian
2012Methods in molecular biology15 citations
Semantic Scholar
Sequence comparative analysis using networks: software for evaluating de novo transcript assembly from next-generation sequencing.
I. Misner, C. Bicep, P. Lopez, S. Halary +2 more
2013Molecular biology and evolution13 citations Open access
Semantic Scholar

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