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S. Halary · SciRah

Researcher profile · Semantic Scholar

S. Halary

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S. Halary — researcher profile on SciRah

h-index: 23
Works: 60
Citations: 1,573

Most-cited papers

Network analyses structure genetic diversity in independent genetic worlds
S. Halary, J. Leigh, Bachar Cheaib, P. Lopez +1 more
2009Proceedings of the National Academy of Sciences of the United States of America267 citations Open access
Semantic Scholar
Unexpected co-occurrence of six bacterial symbionts in the gills of the cold seep mussel Idas sp. (Bivalvia: Mytilidae).
S. Duperron, S. Halary, J. Lorion, M. Sibuet +1 more
2008Environmental Microbiology135 citations Open access
Semantic Scholar
Conserved Meiotic Machinery in Glomus spp., a Putatively Ancient Asexual Fungal Lineage
S. Halary, Shehre-Banoo Malik, Levannia Lildhar, C. Slamovits +2 more
2011Genome Biology and Evolution129 citations Open access
Semantic Scholar
Ral GTPases promote breast cancer metastasis by controlling biogenesis and organ targeting of exosomes
S. Ghoroghi, B. Mary, A. Larnicol, N. Asokan +24 more
2021eLife86 citations Open access
Semantic Scholar
3D FISH for the quantification of methane- and sulphur-oxidizing endosymbionts in bacteriocytes of the hydrothermal vent mussel Bathymodiolus azoricus
S. Halary, V. Riou, F. Gaill, T. Boudier +1 more
2008The ISME Journal73 citations Open access
Semantic Scholar
Some considerations for analyzing biodiversity using integrative metagenomics and gene networks
L. Bittner, S. Halary, C. Payri, C. Cruaud +3 more
2010Biology Direct59 citations Open access
Semantic Scholar
Influence of CH 4 and H 2 S availability on symbiont distribution, carbon assimilation and transfer in the dual symbiotic vent mussel Bathymodiolus azoricus
V. Riou, S. Halary, S. Duperron, S. Bouillon +5 more
200858 citations Open access
Semantic Scholar
EGN: a wizard for construction of gene and genome similarity networks
S. Halary, J. McInerney, P. Lopez, É. Bapteste
2013BMC Evolutionary Biology54 citations Open access
Semantic Scholar
Therapeutic Potential of a New Jumbo Phage That Infects Vibrio coralliilyticus, a Widespread Coral Pathogen
L. Jacquemot, Y. Bettarel, Joanne Monjol, E. Corre +5 more
2018Frontiers in Microbiology47 citations Open access
Semantic Scholar
Mitochondrial Genome Rearrangements in Glomus Species Triggered by Homologous Recombination between Distinct mtDNA Haplotypes
Denis Beaudet, Y. Terrat, S. Halary, I. E. de la Providencia +1 more
2013Genome Biology and Evolution46 citations Open access
Semantic Scholar
Disruption of fish gut microbiota composition and holobiont’s metabolome during a simulated Microcystis aeruginosa (Cyanobacteria) bloom
A. Gallet, S. Halary, C. Duval, Hélène Huet +2 more
2023Microbiome45 citations Open access
Semantic Scholar
Anti-Inflammatory, Antioxidant, and Wound-Healing Properties of Cyanobacteria from Thermal Mud of Balaruc-Les-Bains, France: A Multi-Approach Study
J. Demay, S. Halary, Adeline Knittel-Obrecht, Pascal Villa +7 more
2020Biomolecules41 citations Open access
Semantic Scholar
Novel Single-Stranded DNA Circular Viruses in Pericardial Fluid of Patient with Recurrent Pericarditis
S. Halary, Raja Duraisamy, L. Fancello, Sonia Monteil-Bouchard +5 more
2016Emerging Infectious Diseases37 citations Open access
Semantic Scholar
Monospecific renaming within the cyanobacterial genus Limnospira (Spirulina) and consequences for food authorization.
T. Roussel, S. Halary, C. Duval, B. Piquet +4 more
2023Journal of Applied Microbiology36 citations Open access
Semantic Scholar
Studying Genome Heterogeneity within the Arbuscular Mycorrhizal Fungal Cytoplasm
E. Boon, S. Halary, É. Bapteste, Mohamed Hijri
2015Genome Biology and Evolution35 citations Open access
Semantic Scholar
Mating Type Gene Homologues and Putative Sex Pheromone-Sensing Pathway in Arbuscular Mycorrhizal Fungi, a Presumably Asexual Plant Root Symbiont
S. Halary, Laurence Daubois, Y. Terrat, Sabrina Ellenberger +2 more
2013PLoS ONE35 citations Open access
Semantic Scholar
Bacterial communities associated with the wood-feeding gastropod Pectinodonta sp. (Patellogastropoda, Mollusca).
M. Zbinden, M. Pailleret, J. Ravaux, S. Gaudron +6 more
2010FEMS Microbiology Ecology35 citations Open access
Semantic Scholar
Response of Fish Gut Microbiota to Toxin-Containing Cyanobacterial Extracts: A Microcosm Study on the Medaka (Oryzias latipes)
S. Duperron, S. Halary, Myriam Habiballah, A. Gallet +4 more
2019Environmental Science and Technology Letters34 citations Open access
Semantic Scholar
Microbiome-Aware Ecotoxicology of Organisms: Relevance, Pitfalls, and Challenges
S. Duperron, S. Halary, A. Gallet, B. Marie
2020Frontiers in Public Health32 citations Open access
Semantic Scholar
Viral metagenomics: are we missing the giants?
S. Halary, S. Temmam, D. Raoult, C. Desnues
2016Current Opinion in Microbiology31 citations
Semantic Scholar
Evolutionary history of Idas sp. Med (Bivalvia: Mytilidae), a cold seep mussel bearing multiple symbionts
J. Lorion, S. Halary, S. Samadi, A. Couloux +1 more
201228 citations
Semantic Scholar
Variation in physiological indicators in Bathymodiolus azoricus (Bivalvia: Mytilidae) at the Menez Gwen Mid-Atlantic Ridge deep-sea hydrothermal vent site within a year.
V. Riou, S. Duperron, S. Halary, F. Dehairs +4 more
2010Marine Environmental Research26 citations
Semantic Scholar
Thermal biology of the deep-sea vent annelid Paralvinella grasslei: in vivo studies
D. Cottin, J. Ravaux, Nelly Léger, S. Halary +4 more
2008Journal of Experimental Biology23 citations
Semantic Scholar
Expressed sequence tags from the phytopathogenic fungus Botrytis cinerea
M. Viaud, F. Legeai, J. Pradier, Y. Brygoo +13 more
2005European journal of plant pathology23 citations
Semantic Scholar
Corallivory and the microbial debacle in two branching scleractinians
Y. Bettarel, S. Halary, J. Auguet, T. Mai +6 more
2018The ISME Journal21 citations Open access
Semantic Scholar
Highly divergent ancient gene families in metagenomic samples are compatible with additional divisions of life
P. Lopez, S. Halary, É. Bapteste
2015Biology Direct16 citations Open access
Semantic Scholar
Widespread formation of intracellular calcium carbonates by the bloom-forming cyanobacterium Microcystis.
J. Gaëtan, S. Halary, Maxime Millet, Cécile Bernard +12 more
2022Environmental Microbiology14 citations Open access
Semantic Scholar
Direct Image-Based Correlative Microscopy Technique for Coupling Identification and Structural Investigation of Bacterial Symbionts Associated with Metazoans
S. Halary, S. Duperron, T. Boudier
2011Applied and Environmental Microbiology14 citations Open access
Semantic Scholar
Diversity, metabolome profiling and bioactivities of benthic filamentous cyanobacteria isolated from coastal mangroves of Mayotte
Hui-Bin Wang, S. Halary, C. Duval, Cécile Bernard +9 more
2023Frontiers in Marine Science13 citations Open access
Semantic Scholar
Sequence comparative analysis using networks: software for evaluating de novo transcript assembly from next-generation sequencing.
I. Misner, C. Bicep, P. Lopez, S. Halary +2 more
2013Molecular biology and evolution13 citations Open access
Semantic Scholar
Tomography of bacteria-mineral associations within the deep sea hydrothermal vent shrimp Rimicaris exoculata.
L. Anderson, S. Halary, J. Lechaire, T. Boudier +4 more
200510 citations Open access
Semantic Scholar
Intra-population genomic diversity of the bloom-forming cyanobacterium, Aphanizomenon gracile, at low spatial scale
S. Halary, S. Duperron, Sandra Kim Tiam, C. Duval +2 more
2023ISME Communications9 citations Open access
Semantic Scholar
Genomes of nine biofilm-forming filamentous strains of Cyanobacteria (genera Jaaginema, Scytonema, and Karukerafilum gen. nov.) isolated from mangrove habitats of Guadeloupe (Lesser Antilles)
S. Halary, C. Duval, Benjamin Marie, Cécile Bernard +4 more
2023FEMS Microbes8 citations Open access
Semantic Scholar
A summer in the greater Paris: trophic status of peri-urban lakes shapes prokaryotic community structure and functional potential
Pierre Foucault, S. Halary, C. Duval, Midoli Goto +11 more
2024bioRxiv7 citations Open access
Semantic Scholar
Bacterial ectosymbionts colonizing gills of two Caribbean mangrove crabs
Naëma S. Béziat, S. Duperron, S. Halary, Catherine Azède +1 more
2021Symbiosis7 citations
Semantic Scholar
Disruption of fish gut microbiota composition and holobiont’s metabolome by cyanobacterial blooms
A. Gallet, S. Halary, C. Duval, Hélène Huet +2 more
2021bioRxiv6 citations Open access
Semantic Scholar
Draft Genome Sequence of the Toxic Freshwater Microcystis aeruginosa Strain PMC 728.11 (Cyanobacteria, Chroococcales)
S. Halary, C. Duval, A. Gallet, S. Duperron +4 more
2020Microbiology Resource Announcements5 citations Open access
Semantic Scholar
Limnospira (Cyanobacteria) chemical fingerprint reveals local molecular adaptation
T. Roussel, Cédric Hubas, S. Halary, M. Chynel +7 more
2024bioRxiv4 citations Open access
Semantic Scholar
Transcriptomic insights into the dominance of two phototrophs throughout the water column of a tropical hypersaline-alkaline crater lake (Dziani Dzaha, Mayotte)
S. Duperron, S. Halary, J. Bouly, T. Roussel +12 more
2024Frontiers in Microbiology3 citations Open access
Semantic Scholar
Influence of chemosynthetic substrates availability on symbiont densities, carbon assimilation and transfer in the dual symbiotic vent mussel Bathymodiolus azoricus
V. Riou, S. Halary, S. Duperron, S. Bouillon +5 more
20083 citations Open access
Semantic Scholar
Metabolite diversity of Microcystis strains shows tight correspondence to genotype and may contribute to ecotype specificities
Aurore Huré, Maiwenn Le Meur, C. Duval, J. Bouly +6 more
2026Communications Biology2 citations Open access
Semantic Scholar
Higher Trophic Status Leads to More Diverse and Divergent Microeukaryote Communities Over Time in Urban Lakes From the Greater Paris (France)
S. Duperron, Pierre Foucault, Amaury Le Vern, Midoli Goto +10 more
2025bioRxiv2 citations Open access
Semantic Scholar
Unexpected Micro-Spatial Scale Genomic Diversity of the Bloom-Forming Cyanobacterium Aphanizomenon Gracile and its Phycosphere
S. Halary, S. Duperron, S. K. Tiam, C. Duval +3 more
20212 citations Open access
Semantic Scholar
Uncovering leaf and root microbiomes of mangrove trees in French Guiana
Mathilde Vigneron, S. Halary, Sandrine Crochemore, L. Plaisance +2 more
2026Frontiers in microbiomes1 citations Open access
Semantic Scholar
Ral GTPases promote metastasis by controlling biogenesis and organ colonization of exosomes
S. Ghoroghi, B. Mary, A. Larnicol, A. Klein +21 more
2020bioRxiv1 citations Open access
Semantic Scholar
homologous recombination between distinct mtDNA haplotypes
Denis Beaudet, Y. Terrat, S. Halary, Ivan Enrique
20131 citations
Semantic Scholar
Total Biosynthesis of Pseudomonas aeruginosa-Derived Azabicyclocarbamates Identifies Distinct Dehydrating Condensation Family Proteins
Xiao-Han Liu, S. Najah, Andrea Calderari, Zhilai Hong +7 more
2026bioRxiv0 citations Open access
Semantic Scholar
Integrating metagenome-scale metabolic modelling and metabolomics to identify biochemical interactions in Microcystis phycospheres
Juliette Audemard, Nicolas Creusot, Julie Leloup, C. Duval +15 more
2026bioRxiv0 citations Open access
Semantic Scholar
Integrating metagenome-scale metabolic models and metabolomics to explore candidate biochemical interactions in cultivated Microcystis phycospheres
Juliette Audemard, Nicolas Creusot, Julie Leloup, C. Duval +15 more
2026ISME Communications0 citations Open access
Semantic Scholar
Intracellular formation of amorphous calcium carbonate by bacteria: from molecular actors to environmental impacts
K. Benzerara, Juliette Gaëtan, Neha Mehta, Maxime Millet +7 more
2022Goldschmidt2022 abstracts0 citations Open access
Semantic Scholar

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