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D. Fitzpatrick · SciRah

Researcher profile · Semantic Scholar

D. Fitzpatrick

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D. Fitzpatrick — researcher profile on SciRah

h-index: 29
Works: 90
Citations: 4,767

Most-cited papers

Evolution of pathogenicity and sexual reproduction in eight Candida genomes
G. Butler, Matthew D. Rasmussen, Michael F. Lin, Manuel A. S. Santos +47 more
2009Nature1,052 citations Open access
Semantic Scholar
A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
D. Fitzpatrick, M. E. Logue, J. Stajich, G. Butler
2006BMC Evolutionary Biology505 citations Open access
Semantic Scholar
Horizontal gene transfer in fungi.
D. Fitzpatrick
2012FEMS Microbiology Letters304 citations Open access
Semantic Scholar
Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling
Michael Clarke, A. Lohan, Bernard A. Liu, I. Lagkouvardos +38 more
2013Genome Biology300 citations Open access
Semantic Scholar
Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria
G. Sipos, A. Prasanna, M. Walter, E. O’Connor +28 more
2017Nature Ecology & Evolution170 citations Open access
Semantic Scholar
Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales.
D. Fitzpatrick, C. Creevey, J. McInerney
2006Molecular biology and evolution149 citations Open access
Semantic Scholar
Antibiotic resistance genes across a wide variety of metagenomes.
D. Fitzpatrick, F. Walsh
2016FEMS Microbiology Ecology141 citations Open access
Semantic Scholar
Does a tree–like phylogeny only exist at the tips in the prokaryotes?
C. Creevey, D. Fitzpatrick, G. K. Philip, R. Kinsella +5 more
2004Proceedings of the Royal Society of London. Series B: Biological Sciences134 citations Open access
Semantic Scholar
Pan-genome analyses of model fungal species
Charley G. P. McCarthy, D. Fitzpatrick
2019Microbial Genomics120 citations Open access
Semantic Scholar
Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal Transfer
C. Creevey, T. Doerks, D. Fitzpatrick, J. Raes +1 more
2011PLoS ONE101 citations Open access
Semantic Scholar
Genomic and Proteomic Dissection of the Ubiquitous Plant Pathogen, Armillaria mellea: Toward a New Infection Model System
Cassandra Collins, T. Keane, D. Turner, G. O’Keeffe +2 more
2013Journal of Proteome Research100 citations Open access
Semantic Scholar
Fatty acid biosynthesis in Mycobacterium tuberculosis: Lateral gene transfer, adaptive evolution, and gene duplication
R. Kinsella, D. Fitzpatrick, C. Creevey, J. McInerney
2003Proceedings of the National Academy of Sciences of the United States of America97 citations Open access
Semantic Scholar
Genomic, Network, and Phylogenetic Analysis of the Oomycete Effector Arsenal
Jamie McGowan, D. Fitzpatrick
2017Msphere90 citations Open access
Semantic Scholar
Phylogenomic Reconstruction of the Oomycete Phylogeny Derived from 37 Genomes
Charley G. P. McCarthy, D. Fitzpatrick
2017Msphere82 citations Open access
Semantic Scholar
Regulation of nonribosomal peptide synthesis: bis-thiomethylation attenuates gliotoxin biosynthesis in Aspergillus fumigatus.
S. Dolan, R. Owens, G. O’Keeffe, Stephen Hammel +3 more
2014Chemistry and Biology81 citations Open access
Semantic Scholar
The evolutionary history of the genes involved in the biosynthesis of the antioxidant ergothioneine.
G. Jones, S. Doyle, D. Fitzpatrick
2014Gene80 citations
Semantic Scholar
Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis
D. Fitzpatrick, M. E. Logue, G. Butler
2008BMC Evolutionary Biology71 citations Open access
Semantic Scholar
Recent advances in oomycete genomics.
Jamie McGowan, D. Fitzpatrick
2020Advances in Genetics53 citations
Semantic Scholar
RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus
G. O’Keeffe, Stephen Hammel, R. Owens, T. Keane +3 more
2014BMC Genomics52 citations Open access
Semantic Scholar
Global transcript and phenotypic analysis of yeast cells expressing Ssa1, Ssa2, Ssa3 or Ssa4 as sole source of cytosolic Hsp70-Ssa chaperone activity
Naushaba Hasin, S. Cusack, S. Ali, D. Fitzpatrick +1 more
2014BMC Genomics50 citations Open access
Semantic Scholar
Interplay between Gliotoxin Resistance, Secretion, and the Methyl/Methionine Cycle in Aspergillus fumigatus
R. Owens, G. O’Keeffe, Elizabeth B. Smith, S. Dolan +6 more
2015Eukaryotic Cell49 citations Open access
Semantic Scholar
A Pluralistic Account of Homology: Adapting the Models to the Data
Leanne Haggerty, Pierre-Alain Jachiet, W. Hanage, D. Fitzpatrick +6 more
2013Molecular biology and evolution49 citations Open access
Semantic Scholar
Epidemiological and virological investigations of equine influenza outbreaks in Ireland (2010–2012)
S. Gildea, D. Fitzpatrick, A. Cullinane
2013Influenza and Other Respiratory Viruses46 citations Open access
Semantic Scholar
Lines of Evidence for Horizontal Gene Transfer of a Phenazine Producing Operon into Multiple Bacterial Species
D. Fitzpatrick
2009Journal of Molecular Evolution45 citations
Semantic Scholar
Comparative Genomic and Proteomic Analyses of Three Widespread Phytophthora Species: Phytophthora chlamydospora, Phytophthora gonapodyides and Phytophthora pseudosyringae
Jamie McGowan, R. O'Hanlon, R. Owens, D. Fitzpatrick
2020Microorganisms44 citations Open access
Semantic Scholar
Reconstructing the Fungal Tree of Life Using Phylogenomics and a Preliminary Investigation of the Distribution of Yeast Prion-Like Proteins in the Fungal Kingdom
E. Medina, Gary W. Jones, D. Fitzpatrick
2011Journal of Molecular Evolution42 citations
Semantic Scholar
Control of Development, Secondary Metabolism and Light-Dependent Carotenoid Biosynthesis by the Velvet Complex of Neurospora crassa
Ö. Bayram, A. Dettmann, Betim Karahoda, Nicola M. Moloney +13 more
2019Genetics41 citations Open access
Semantic Scholar
Comparative genomic study of the Penicillium genus elucidates a diverse pangenome and 15 lateral gene transfer events
Celine Petersen, Trine Sørensen, M. R. Nielsen, T. E. Sondergaard +4 more
2023IMA Fungus35 citations Open access
Semantic Scholar
Proteome and allergenome of the European house dust mite Dermatophagoides pteronyssinus
Rose Waldron, Jamie McGowan, N. Gordon, Charley G. P. McCarthy +2 more
2019PLoS ONE30 citations Open access
Semantic Scholar
The effect of entomopathogenic fungal culture filtrate on the immune response of the greater wax moth, Galleria mellonella.
L. McNamara, J. Carolan, C. Griffin, D. Fitzpatrick +1 more
2017Journal of insect physiology29 citations Open access
Semantic Scholar
Evolution of flower shape in Plantago lanceolata
Wesley Reardon, D. Fitzpatrick, M. Fares, J. M. Nugent
2009Plant Molecular Biology28 citations Open access
Semantic Scholar
Additional file 7: Figure S3. of Emergence and evolution of yeast prion and prion-like proteins
Lu An, D. Fitzpatrick, Paul M. Harrison
201625 citations
Semantic Scholar
The Cu regulon of the human fungal pathogen Cryptococcus neoformans H 99 : Cuf 1 activates distinct genes in response to both Cu excess and deficiency
C. Ding, Jun Yin, E. Tovar, D. Fitzpatrick +3 more
201325 citations
Semantic Scholar
Gene and genome trees conflict at many levels
Leanne Haggerty, Fergal J. Martin, D. Fitzpatrick, J. McInerney
2009Philosophical Transactions of the Royal Society B: Biological Sciences25 citations Open access
Semantic Scholar
Systematic Search for Evidence of Interdomain Horizontal Gene Transfer from Prokaryotes to Oomycete Lineages
Charley G. P. McCarthy, D. Fitzpatrick
2016Msphere24 citations Open access
Semantic Scholar
Different outcomes for the MYB floral symmetry genes DIVARICATA and RADIALIS during the evolution of derived actinomorphy in Plantago.
Wesley Reardon, P. Gallagher, Katie M Nolan, Hayley Wright +7 more
2014New Phytologist22 citations
Semantic Scholar
Comparative Analysis of Oomycete Genome Evolution Using the Oomycete Gene Order Browser (OGOB)
Jamie McGowan, Kevin P. Byrne, D. Fitzpatrick
2018Genome Biology and Evolution21 citations Open access
Semantic Scholar
Draft Genome Sequence of Dermatophagoides pteronyssinus, the European House Dust Mite
Rose Waldron, Jamie McGowan, N. Gordon, Charley G. P. McCarthy +3 more
2017Genome Announcements21 citations Open access
Semantic Scholar
Evidence of Positive Darwinian Selection in Omp85, a Highly ConservedBacterial Outer Membrane Protein Essential for Cell Viability
D. Fitzpatrick, J. McInerney
2005Journal of Molecular Evolution20 citations
Semantic Scholar
Genome analysis of the yeast Diutina catenulata, a member of the Debaryomycetaceae/Metschnikowiaceae (CTG-Ser) clade
Caoimhe E. O'Brien, Charley G. P. McCarthy, Annie E Walshe, Dennis R. Shaw +4 more
2018PLoS ONE19 citations Open access
Semantic Scholar
Characterising the proteomic response of mushroom pathogen Lecanicillium fungicola to Bacillus velezensis QST 713 and Kos biocontrol agents
J. Clarke, H. Grogan, D. Fitzpatrick, K. Kavanagh
2022European journal of plant pathology18 citations Open access
Semantic Scholar
Evolutionary, structural and functional analysis of the caleosin/peroxygenase gene family in the Fungi
Farzana Rahman, Mehedi Hassan, A. Hanano, D. Fitzpatrick +2 more
2018BMC Genomics18 citations Open access
Semantic Scholar
Proteomic Characterization of Armillaria mellea Reveals Oxidative Stress Response Mechanisms and Altered Secondary Metabolism Profiles
Cassandra Collins, Rachel Hurley, Nada Almutlaqah, G. O’Keeffe +3 more
2017Microorganisms18 citations Open access
Semantic Scholar
Transmission of mushroom virus X and the impact of virus infection on the transcriptomes and proteomes of different strains of Agaricus bisporus.
E. O’Connor, S. Doyle, Aniça Amini, H. Grogan +1 more
2021Fungal Biology17 citations Open access
Semantic Scholar
Whole Genome Sequence of the Commercially Relevant Mushroom Strain Agaricus bisporus var. bisporus ARP23
E. O’Connor, Jamie McGowan, Charley G. P. McCarthy, Aniça Amini +2 more
2019G3: Genes, Genomes, Genetics17 citations Open access
Semantic Scholar
Dual-Transcriptomic, Microscopic, and Biocontrol Analyses of the Interaction Between the Bioeffector Pythium oligandrum and the Pythium Soft-Rot of Ginger Pathogen Pythium myriotylum
P. Daly, Siqiao Chen, Taiqiang Xue, Jingjing Li +12 more
2021Frontiers in Microbiology16 citations Open access
Semantic Scholar
Assessment of Inactivating Stop Codon Mutations in Forty Saccharomyces cerevisiae Strains: Implications for [PSI +] Prion- Mediated Phenotypes
D. Fitzpatrick, J. O'Brien, Ciara B. Moran, Naushaba Hasin +5 more
2011PLoS ONE16 citations Open access
Semantic Scholar
Evaluation of whether accelerated protein evolution in chordates has occurred before, after, or simultaneously with gene duplication.
Catrióna R. Johnston, C. O'Dushlaine, D. Fitzpatrick, Richard J. Edwards +1 more
2006Molecular biology and evolution16 citations Open access
Semantic Scholar
Towards understanding the gliotoxin detoxification mechanism: in vivo thiomethylation protects yeast from gliotoxin cytotoxicity
Elizabeth B. Smith, S. Dolan, D. Fitzpatrick, S. Doyle +1 more
2016Microbial Cell15 citations Open access
Semantic Scholar
Insight into the Family of Na+/Ca2+ Exchangers of Caenorhabditis elegans
Vishal Sharma, Chao He, Julian Sacca-Schaeffer, E. Brzozowski +4 more
2013Genetics15 citations Open access
Semantic Scholar

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G. Butler — researcher profile on SciRah

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C. Creevey — researcher profile on SciRah

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T. Keane — researcher profile on SciRah

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M. E. Logue — researcher profile on SciRah

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E. O’Connor — researcher profile on SciRah