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M. Dunthorn · SciRah

Researcher profile · Semantic Scholar

M. Dunthorn

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M. Dunthorn — researcher profile on SciRah

h-index: 42
Works: 130
Citations: 14K

Most-cited papers

Eukaryotic plankton diversity in the sunlit ocean
C. de Vargas, S. Audic, N. Henry, J. Decelle +50 more
2015Science1,818 citations Open access
Semantic Scholar
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
S. Adl, D. Bass, Christopher E. Lane, J. Lukeš +43 more
2018Journal of Eukaryotic Microbiology1,200 citations Open access
Semantic Scholar
Soil protists: a fertile frontier in soil biology research.
S. Geisen, E. Mitchell, S. Adl, M. Bonkowski +9 more
2018FEMS Microbiology Reviews626 citations Open access
Semantic Scholar
Swarm v2: highly-scalable and high-resolution amplicon clustering
F. Mahé, Torbjørn Rognes, C. Quince, C. de Vargas +1 more
2015PeerJ541 citations Open access
Semantic Scholar
Patterns of rare and abundant marine microbial eukaryotes.
R. Logares, S. Audic, D. Bass, L. Bittner +25 more
2014Current Biology489 citations Open access
Semantic Scholar
Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.
R. Massana, A. Gobet, S. Audic, D. Bass +31 more
2015Environmental Microbiology381 citations Open access
Semantic Scholar
Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests
F. Mahé, C. de Vargas, D. Bass, L. Czech +18 more
2017Nature Ecology &Evolution269 citations Open access
Semantic Scholar
Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems.
D. Singer, Christophe V. W. Seppey, Guillaume Lentendu, M. Dunthorn +15 more
2020Environment International236 citations Open access
Semantic Scholar
Relationships between
B. Williams, Cédric Berney, M. Dunthorn, Frédéric +4 more
2018177 citations
Semantic Scholar
Molecular diversity and distribution of marine fungi across 130 European environmental samples
T. Richards, G. Leonard, F. Mahé, Javier del Campo +7 more
2015Proceedings of the Royal Society of London. Biological Sciences169 citations Open access
Semantic Scholar
Soil protistology rebooted: 30 fundamental questions to start with
S. Geisen, Edward A. D. Mitchell, David M. Wilkinson, S. Adl +43 more
2017165 citations Open access
Semantic Scholar
Swarm v3: towards tera-scale amplicon clustering
F. Mahé, L. Czech, A. Stamatakis, C. Quince +3 more
2021Bioinform.124 citations Open access
Semantic Scholar
Clarifying the Relationships between Microsporidia and Cryptomycota
D. Bass, L. Czech, B. Williams, Cédric Berney +5 more
2018Journal of Eukaryotic Microbiology115 citations Open access
Semantic Scholar
Beyond the “Code”: A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora)
A. Warren, D. Patterson, M. Dunthorn, John C. Clamp +52 more
2017Journal of Eukaryotic Microbiology115 citations Open access
Semantic Scholar
Perspectives from Ten Years of Protist Studies by High‐Throughput Metabarcoding
L. Santoferrara, F. Burki, S. Filker, R. Logares +2 more
2020Journal of Eukaryotic Microbiology104 citations Open access
Semantic Scholar
Benthic protists: the under-charted majority.
Dominik Forster, M. Dunthorn, F. Mahé, J. Dolan +31 more
2016FEMS Microbiology Ecology93 citations Open access
Semantic Scholar
UniEuk: Time to Speak a Common Language in Protistology!
Cédric Berney, Andreea Ciuprina, Sara J. Bender, J. Brodie +21 more
2017Journal of Eukaryotic Microbiology75 citations Open access
Semantic Scholar
Cryptic Sex in Symbiodinium (Alveolata, Dinoflagellata) is Supported by an Inventory of Meiotic Genes
J. Chi, M. Parrow, M. Dunthorn
2014Journal of Eukaryotic Microbiology71 citations
Semantic Scholar
Diatom diversity through HTS-metabarcoding in coastal European seas
R. Piredda, J. Claverie, J. Decelle, C. de Vargas +15 more
2018Scientific Reports66 citations Open access
Semantic Scholar
Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean.
J. Decelle, Q. Carradec, X. Pochon, N. Henry +7 more
2018Current Biology55 citations Open access
Semantic Scholar
Comparing High‐throughput Platforms for Sequencing the V4 Region of SSU‐rDNA in Environmental Microbial Eukaryotic Diversity Surveys
F. Mahé, J. Mayor, J. Bunge, J. Chi +6 more
2015Journal of Eukaryotic Microbiology55 citations
Semantic Scholar
Testing ecological theories with sequence similarity networks: marine ciliates exhibit similar geographic dispersal patterns as multicellular organisms
Dominik Forster, L. Bittner, Slim Karkar, M. Dunthorn +5 more
2015BMC Biology50 citations Open access
Semantic Scholar
Metagenomic Analysis Using Phylogenetic Placement—A Review of the First Decade
L. Czech, A. Stamatakis, M. Dunthorn, P. Barbera
2022Frontiers in Bioinformatics47 citations Open access
Semantic Scholar
Consistent patterns of high alpha and low beta diversity in tropical parasitic and free‐living protists
Guillaume Lentendu, F. Mahé, D. Bass, S. Rueckert +2 more
2018Molecular Ecology47 citations Open access
Semantic Scholar
Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds
S. Filker, Anna Gimmler, M. Dunthorn, F. Mahé +1 more
2014Extremophiles45 citations
Semantic Scholar
The Asymmetric Response Concept explains ecological consequences of multiple stressor exposure and release.
M. Vos, D. Hering, M. Gessner, F. Leese +56 more
2023Science of the Total Environment42 citations
Semantic Scholar
Advancing biodiversity assessments with environmental DNA: Long‐read technologies help reveal the drivers of Amazonian fungal diversity
C. Ritter, M. Dunthorn, S. Anslan, V. X. de Lima +3 more
2020Ecology and Evolution34 citations Open access
Semantic Scholar
The affiliation of Hexasterias problematica and Halodinium verrucatum sp. nov. to ciliate cysts based on molecular phylogeny and cyst wall composition.
P. Gurdebeke, K. Mertens, Y. Takano, Aika Yamaguchi +5 more
2018European Journal of Protistology31 citations Open access
Semantic Scholar
Comparison of three clustering approaches for detecting novel environmental microbial diversity
Dominik Forster, M. Dunthorn, T. Stoeck, F. Mahé
2016PeerJ26 citations Open access
Semantic Scholar
Harnessing eDNA metabarcoding to investigate fish community composition and its seasonal changes in the Oslo fjord
Cintia Oliveira Carvalho, W. Gromstad, M. Dunthorn, Hans Erik Karlsen +6 more
2024Scientific Reports25 citations Open access
Semantic Scholar
Identification of the pathogenic ciliate Pseudocohnilembus persalinus (Oligohymenophorea: Scuticociliatia) by fluorescence in situ hybridization.
Zifeng Zhan, T. Stoeck, M. Dunthorn, Kui-Dong Xu
2014European Journal of Protistology25 citations
Semantic Scholar
Ciliates — Protists with complex morphologies and ambiguous early fossil record
M. Dunthorn, J. Lipps, J. Dolan, M. Saab +53 more
201524 citations Open access
Semantic Scholar
Genome Evolution of Asexual Organisms and the Paradox of Sex in Eukaryotes
E. Hörandl, Jens Bast, Alexander Brandt, S. Scheu +9 more
2020Evolutionary Biology—A Transdisciplinary Approach21 citations Open access
Semantic Scholar
Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA Metabarcoding
C. Ritter, Dominik Forster, J. Azevedo, A. Antonelli +3 more
2021Microbial Ecology20 citations Open access
Semantic Scholar
Assessing the response of an urban stream ecosystem to salinization under different flow regimes.
Iris Madge Pimentel, Daria Baikova, Dominik Buchner, Andrea Burfeid Castellanos +15 more
2024Science of the Total Environment19 citations Open access
Semantic Scholar
New SSU-rDNA sequences for eleven colpodeans (Ciliophora, Colpodea) and description of Apocyrtolophosis nov. gen.
W. Foissner, W. Bourland, K. Wolf, T. Stoeck +1 more
2014European Journal of Protistology17 citations
Semantic Scholar
Towards a trait-based framework for protist ecology and evolution.
M. Jamy, Pierre Ramond, D. Bass, Javier del Campo +5 more
2025Trends in Microbiology15 citations Open access
Semantic Scholar
Yeasts dominate soil fungal communities in three lowland Neotropical rainforests
M. Dunthorn, H. Kauserud, D. Bass, J. Mayor +1 more
2017bioRxiv15 citations Open access
Semantic Scholar
"Candidatus Haloectosymbiotes riaformosensis" (Halobacteriaceae), an archaeal ectosymbiont of the hypersaline ciliate Platynematum salinarum.
Sabine Filker, Marina Kaiser, R. Rosselló-Mora, M. Dunthorn +2 more
2014Systematic and Applied Microbiology14 citations Open access
Semantic Scholar
Protist Biodiversity and Biogeography in Lakes From Four Brazilian River–Floodplain Systems
Guillaume Lentendu, P. R. B. Buosi, A. F. Cabral, Bianca Trevizan Segóvia +5 more
2019Journal of Eukaryotic Microbiology13 citations Open access
Semantic Scholar
Phylogenetic relatedness drives protist assembly in marine and terrestrial environments
Guillaume Lentendu, M. Dunthorn
2021Global Ecology and Biogeography12 citations Open access
Semantic Scholar
The windblown: possible explanations for dinophyte DNA in forest soils
M. Gottschling, L. Czech, F. Mahé, S. Adl +1 more
2020bioRxiv12 citations Open access
Semantic Scholar
Identifying Potential Hosts of Short-Branch Microsporidia
Annemie Doliwa, M. Dunthorn, Erika Rassoshanska, F. Mahé +2 more
2020Microbial Ecology10 citations Open access
Semantic Scholar
Meiotic Genes in Colpodean Ciliates Support Secretive Sexuality
M. Dunthorn, Rebecca A. Zufall, J. Chi, K. Paszkiewicz +2 more
2017bioRxiv9 citations Open access
Semantic Scholar
Comparing Microsporidia-targeting primers for environmental DNA sequencing
Annemie Doliwa, D. Grabner, B. Sures, M. Dunthorn
2023Parasite8 citations Open access
Semantic Scholar
Ciliate SSU-rDNA reference alignments and trees for phylogenetic placements of metabarcoding data
Ľ. Rajter, M. Dunthorn
2021Metabarcoding and Metagenomics8 citations Open access
Semantic Scholar
Putatively asexual chrysophytes have meiotic genes: evidence from transcriptomic data
D. Kraus, J. Chi, J. Boenigk, D. Beisser +2 more
2019PeerJ8 citations Open access
Semantic Scholar
Using digital PCR to predict ciliate abundance from ribosomal RNA gene copy numbers.
Megan Gross, M. Dunthorn, Q. Mauvisseau, T. Stoeck
2024Environmental Microbiology6 citations Open access
Semantic Scholar
Above- and below-ground biodiversity responses to the prolonged flood pulse in central-western Amazonia, Brazil
Y. K. Bredin, L. Hess, A. Scabin, M. Dunthorn +5 more
2021bioRxiv6 citations Open access
Semantic Scholar
Colpodean ciliate phylogeny and reference alignments for phylogenetic placements.
Ľ. Rajter, Isabelle Ewers, N. Graupner, P. Vďačný +1 more
2020European Journal of Protistology6 citations
Semantic Scholar

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