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R. Papke · SciRah

Researcher profile · Semantic Scholar

R. Papke

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R. Papke — researcher profile on SciRah

h-index: 32
Works: 77
Citations: 4,467

Most-cited papers

Lateral gene transfer and the origins of prokaryotic groups.
Y. Boucher, C. Douady, R. Papke, D. Walsh +4 more
2003Annual Review of Genetics438 citations
Semantic Scholar
Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events.
O. Zhaxybayeva, J. Gogarten, R. L. Charlebois, W. Doolittle +1 more
2006Genome Research344 citations Open access
Semantic Scholar
The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea.
E. Mongodin, K. E. Nelson, S. Daugherty, R. Deboy +14 more
2005Proceedings of the National Academy of Sciences of the United States of America314 citations Open access
Semantic Scholar
New Abundant Microbial Groups in Aquatic Hypersaline Environments
R. Ghai, L. Pasic, A. Fernández, Ana-Belen Martin-Cuadrado +9 more
2011Scientific Reports311 citations Open access
Semantic Scholar
Ancient origins determine global biogeography of hot and cold desert cyanobacteria
J. Bahl, M. Lau, Gavin J. D. Smith, D. Vijaykrishna +8 more
2011Nature Communications216 citations Open access
Semantic Scholar
Genomics and the bacterial species problem
W. Doolittle, R. Papke
2006Genome Biology212 citations Open access
Semantic Scholar
Microbial diversity of hypersaline environments: a metagenomic approach.
A. Ventosa, R. R. de la Haba, C. Sánchez-Porro, R. Papke
2015Current Opinion in Microbiology192 citations Open access
Semantic Scholar
Frequent Recombination in a Saltern Population of Halorubrum
R. Papke, J. Koenig, F. Rodríguez-Valera, W. Doolittle
2004Science153 citations
Semantic Scholar
Searching for species in haloarchaea
R. Papke, O. Zhaxybayeva, E. Feil, Katrin Sommerfeld +2 more
2007Proceedings of the National Academy of Sciences of the United States of America138 citations Open access
Semantic Scholar
Low species barriers in halophilic archaea and the formation of recombinant hybrids.
A. Naor, P. Lapierre, M. Mevarech, R. Papke +1 more
2012Current Biology134 citations Open access
Semantic Scholar
Roadmap for naming uncultivated Archaea and Bacteria
A. Murray, J. Freudenstein, S. Gribaldo, R. Hatzenpichler +61 more
2020Nature Microbiology131 citations Open access
Semantic Scholar
Archaeal diversity along a soil salinity gradient prone to disturbance.
D. Walsh, R. Papke, W. Doolittle
2005Environmental Microbiology122 citations
Semantic Scholar
Actinorhodopsins: proteorhodopsin-like gene sequences found predominantly in non-marine environments.
Adrian K. Sharma, O. Zhaxybayeva, R. Papke, W. Doolittle
2008Environmental Microbiology118 citations
Semantic Scholar
Genomic plasticity in prokaryotes: the case of the square haloarchaeon
S. Cuadros-Orellana, Ana-Belen Martin-Cuadrado, B. Legault, G. D'Auria +3 more
2007The ISME Journal112 citations
Semantic Scholar
Comparison of prokaryotic community structure from Mediterranean and Atlantic saltern concentrator ponds by a metagenomic approach
A. Fernández, Blanca Vera-Gargallo, C. Sánchez-Porro, R. Ghai +3 more
2014Frontiers in Microbiology93 citations Open access
Semantic Scholar
Biofilms formed by the archaeon Haloferax volcanii exhibit cellular differentiation and social motility, and facilitate horizontal gene transfer
Scott Chimileski, Michael J. Franklin, R. Papke
2014BMC Biology89 citations Open access
Semantic Scholar
Intertwined Evolutionary Histories of Marine Synechococcus and Prochlorococcus marinus
O. Zhaxybayeva, W. Doolittle, R. Papke, J. Gogarten
2009Genome Biology and Evolution84 citations Open access
Semantic Scholar
DNA as a Phosphate Storage Polymer and the Alternative Advantages of Polyploidy for Growth or Survival
Karolin Zerulla, Scott Chimileski, Daniela J. Näther, U. Gophna +2 more
2014PLoS ONE81 citations Open access
Semantic Scholar
Multilocus sequence analysis of the family Halomonadaceae.
R. R. de la Haba, M. Márquez, R. Papke, A. Ventosa
2012International Journal of Systematic and Evolutionary Microbiology75 citations Open access
Semantic Scholar
Evolution of rhodopsin ion pumps in haloarchaea
Adrian K. Sharma, D. Walsh, É. Bapteste, F. Rodríguez-Valera +2 more
2007BMC Evolutionary Biology72 citations Open access
Semantic Scholar
Quantifying Homologous Replacement of Loci between Haloarchaeal Species
David Williams, J. Gogarten, R. Papke
2012Genome Biology and Evolution66 citations Open access
Semantic Scholar
Viruses of Haloarchaea
Alison W S Luk, T. Williams, S. Erdmann, R. Papke +1 more
2014Life60 citations Open access
Semantic Scholar
Cell sorting analysis of geographically separated hypersaline environments
O. Zhaxybayeva, R. Stepanauskas, Nikhil Ram Mohan, R. Papke
2013Extremophiles58 citations
Semantic Scholar
Population and genomic analysis of the genus Halorubrum
Matthew S. Fullmer, Shannon M. Soucy, K. Swithers, A. Makkay +4 more
2014Frontiers in Microbiology51 citations Open access
Semantic Scholar
Extracellular DNA metabolism in Haloferax volcanii
Scott Chimileski, K. Dolas, A. Naor, U. Gophna +1 more
2014Frontiers in Microbiology46 citations Open access
Semantic Scholar
A multilocus sequence analysis approach to the phylogeny and taxonomy of the Halobacteriales.
R. Papke, E. White, P. Reddy, G. Weigel +4 more
2011International Journal of Systematic and Evolutionary Microbiology45 citations
Semantic Scholar
How Bacterial Lineages Emerge
R. Papke, J. Gogarten
2012Science42 citations
Semantic Scholar
The Patchy Distribution of Restriction–Modification System Genes and the Conservation of Orphan Methyltransferases in Halobacteria
Matthew S. Fullmer, Matthew Ouellette, Artemis S. Louyakis, R. Papke +1 more
2019bioRxiv39 citations Open access
Semantic Scholar
Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution
R. Méheust, A. K. Watson, F. Lapointe, R. Papke +2 more
2018Genome Biology38 citations Open access
Semantic Scholar
Diversity of bacteriorhodopsins in different hypersaline waters from a single Spanish saltern.
R. Papke, C. Douady, W. Doolittle, F. Rodríguez-Valera
2003Environmental Microbiology36 citations
Semantic Scholar
The Evolutionary Origins of Extreme Halophilic Archaeal Lineages
Yutian Feng, Uri Neri, Sophia P. Gosselin, Artemis S. Louyakis +3 more
2021Genome Biology and Evolution33 citations Open access
Semantic Scholar
Evidence from phylogenetic and genome fingerprinting analyses suggests rapidly changing variation in Halorubrum and Haloarcula populations
Nikhil Ram-Mohan, Matthew S. Fullmer, A. Makkay, Ryan Wheeler +4 more
2014Frontiers in Microbiology32 citations Open access
Semantic Scholar
Horizontal Gene Transfer, Dispersal and Haloarchaeal Speciation
R. Papke, Paulina Corral, Nikhil Ram-Mohan, R. R. de la Haba +3 more
2015Life30 citations Open access
Semantic Scholar
Molecular phylogeny of microorganisms
A. Oren, R. Papke
201028 citations
Semantic Scholar
Inteins as indicators of gene flow in the halobacteria
Shannon M. Soucy, Matthew S. Fullmer, R. Papke, J. Gogarten
2014Frontiers in Microbiology27 citations Open access
Semantic Scholar
Assessment of MultiLocus Sequence Analysis As a Valuable Tool for the Classification of the Genus Salinivibrio
Clara López-Hermoso, R. R. de la Haba, C. Sánchez-Porro, R. Papke +1 more
2017Frontiers in Microbiology25 citations Open access
Semantic Scholar
In Vivo Characterization of the Homing Endonuclease within the polB Gene in the Halophilic Archaeon Haloferax volcanii
A. Naor, Rona Lazary, A. Barzel, R. Papke +1 more
2011PLoS ONE24 citations Open access
Semantic Scholar
Characterizing the DNA Methyltransferases of Haloferax volcanii via Bioinformatics, Gene Deletion, and SMRT Sequencing
Matthew Ouellette, J. Gogarten, Jessica Lajoie, A. Makkay +1 more
2018Genes22 citations Open access
Semantic Scholar
Comparative Analysis of Surface Layer Glycoproteins and Genes Involved in Protein Glycosylation in the Genus Haloferax
Yarden Shalev, Shannon M. Soucy, R. Papke, J. Gogarten +2 more
2018Genes21 citations Open access
Semantic Scholar
Genotypic and Lipid Analyses of Strains From the Archaeal Genus Halorubrum Reveal Insights Into Their Taxonomy, Divergence, and Population Structure
R. R. de la Haba, Paulina Corral, C. Sánchez-Porro, Carmen Infante-Domínguez +4 more
2018Frontiers in Microbiology21 citations Open access
Semantic Scholar
Deciphering the Translation Initiation Factor 5A Modification Pathway in Halophilic Archaea
Laurence Prunetti, M. Graf, I. Blaby, L. Peil +6 more
2016Archaea21 citations Open access
Semantic Scholar
Ancient origin of the divergent forms of leucyl-tRNA synthetases in the Halobacteriales
Cheryl P. Andam, Timothy J. Harlow, R. Papke, J. Gogarten
2012BMC Evolutionary Biology21 citations Open access
Semantic Scholar
A critique of prokaryotic species concepts.
R. Papke
2009Methods in molecular biology21 citations
Semantic Scholar
Adaptation reduces competitive dominance and alters community assembly
Christopher P. Nadeau, Timothy E. Farkas, A. Makkay, R. Papke +1 more
2021Proceedings of the Royal Society B20 citations Open access
Semantic Scholar
Genome-wide DNA methylation analysis of Haloferax volcanii H26 and identification of DNA methyltransferase related PD-(D/E)XK nuclease family protein HVO_A0006
Matthew Ouellette, L. Jackson, Scott Chimileski, R. Papke
2015Frontiers in Microbiology20 citations Open access
Semantic Scholar
Dihydroxyacetone metabolism in Haloferax volcanii
Matthew Ouellette, A. Makkay, R. Papke
2013Frontiers in Microbiology20 citations Open access
Semantic Scholar
Halorubrum persicum sp. nov., an extremely halophilic archaeon isolated from sediment of a hypersaline lake.
Paulina Corral, R. R. de la Haba, C. Sánchez-Porro, M. Amoozegar +2 more
2015International Journal of Systematic and Evolutionary Microbiology19 citations Open access
Semantic Scholar
Nutrient supplementation experiments with saltern microbial communities implicate utilization of DNA as a source of phosphorus
Zhengshuang Hua, Matthew Ouellette, A. Makkay, R. Papke +1 more
2021The ISME Journal18 citations Open access
Semantic Scholar
Getting a hold on archaeal type IV pili: an expanding repertoire of cellular appendages implicates complex regulation and diverse functions
Scott Chimileski, R. Papke
2015Frontiers in Microbiology18 citations Open access
Semantic Scholar
Interaction of two strongly divergent archaellins stabilizes the structure of the Halorubrum archaellum
Mikhail G. Pyatibratov, Alexey S. Syutkin, Tessa E. F. Quax, T. Melnik +7 more
2019bioRxiv13 citations Open access
Semantic Scholar

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W. Doolittle×8
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