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O. Panaud · SciRah

Researcher profile · Semantic Scholar

O. Panaud

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O. Panaud — researcher profile on SciRah

h-index: 43
Works: 102
Citations: 14K

Most-cited papers

A unified classification system for eukaryotic transposable elements
T. Wicker, F. Sabot, A. Hua-Van, J. Bennetzen +9 more
2007Nature reviews genetics2,888 citations
Semantic Scholar
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
A. D'Hont, F. Denoeud, J. Aury, F. Baurens +60 more
2012Nature1,103 citations Open access
Semantic Scholar
Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
É. Derelle, C. Ferraz, S. Rombauts, P. Rouzé +22 more
2006Proceedings of the National Academy of Sciences of the United States of America867 citations Open access
Semantic Scholar
Reference genome sequence of the model plant Setaria
J. Bennetzen, J. Schmutz, Hao Wang, Ryan J. Percifield +30 more
2012Nature Biotechnology850 citations Open access
Semantic Scholar
The genome of Theobroma cacao
X. Argout, J. Salse, J. Aury, M. Guiltinan +57 more
2011Nature Genetics711 citations Open access
Semantic Scholar
Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.)
O. Panaud, X. Chen, S. McCouch
1996Molecular and General Genetics MGG710 citations
Semantic Scholar
Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas
A. Worden, Jae-Hyeok Lee, T. Mock, P. Rouzé +47 more
2009Science679 citations Open access
Semantic Scholar
Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice.
Benoı̂t Piégu, R. Guyot, N. Picault, A. Roulin +7 more
2006Genome Research581 citations Open access
Semantic Scholar
Microsatellite marker development, mapping and applications in rice genetics and breeding
S. McCouch, Xiuli Chen, O. Panaud, S. Temnykh +5 more
1997Plant Molecular Biology575 citations
Semantic Scholar
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
J. Stein, Yeisoo Yu, D. Copetti, D. Zwickl +61 more
2018Nature Genetics474 citations Open access
Semantic Scholar
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida
J. Collén, B. Porcel, W. Carré, S. Ball +54 more
2013Proceedings of the National Academy of Sciences of the United States of America372 citations Open access
Semantic Scholar
Oak genome reveals facets of long lifespan
C. Plomion, J. Aury, J. Amselem, Thibault Leroy +63 more
2018Nature Plants361 citations Open access
Semantic Scholar
The Rice Annotation Project Database (RAP-DB): 2008 update
Tsuyoshi Tanaka, B. Antonio, S. Kikuchi, T. Matsumoto +87 more
2007Nucleic Acids Res.342 citations Open access
Semantic Scholar
LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model
C. Vitte, O. Panaud
2005Cytogenetic and Genome Research309 citations
Semantic Scholar
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication
Mu-Hua Wang, Yeisoo Yu, G. Haberer, Pradeep Reddy Marri +27 more
2014Nature Genetics249 citations Open access
Semantic Scholar
Genomic paleontology provides evidence for two distinct origins of Asian rice (Oryza sativa L.)
Clémentine Vitte, T. Ishii, F. Lamy, D. Brar +1 more
2004Zeitschrift für Induktive Abstammungs- und Vererbungslehre192 citations
Semantic Scholar
Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L.
C. Vitte, O. Panaud
2003Molecular biology and evolution187 citations Open access
Semantic Scholar
Widespread and frequent horizontal transfers of transposable elements in plants
Moaine El Baidouri, M. Carpentier, R. Cooke, Dong-Ying Gao +6 more
2014Genome Research179 citations Open access
Semantic Scholar
LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss
C. Vitte, O. Panaud, H. Quesneville
2007BMC Genomics160 citations Open access
Semantic Scholar
Comparative Genomic Paleontology across Plant Kingdom Reveals the Dynamics of TE-Driven Genome Evolution
Moaine El Baidouri, O. Panaud
2013Genome Biology and Evolution154 citations Open access
Semantic Scholar
Traditional management of cassava morphological and genetic diversity by the Makushi Amerindians (Guyana, South America): Perspectives for on-farm conservation of crop genetic resources
M. Elias, D. McKey, O. Panaud, Marie-Charlotte Anstett +1 more
2004Euphytica146 citations
Semantic Scholar
Assessment of genetic relationships between Setaria italica and its wild relative S. viridis using AFLP markers
M. Le Thierry D'Ennequin, O. Panaud, B. Toupance, A. Sarr
2000Theoretical and Applied Genetics121 citations
Semantic Scholar
Retrotranspositional landscape of Asian rice revealed by 3000 genomes
M. Carpentier, E. Manfroi, F. Wei, Hshin-Ping Wu +6 more
2019Nature Communications120 citations Open access
Semantic Scholar
Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza.
J. Ammiraju, A. Zuccolo, Yeisoo Yu, Xiang Song +11 more
2007The Plant Journal109 citations Open access
Semantic Scholar
Frequency of microsatellite sequences in rice (Oryza sativa L.).
O. Panaud, Xiuli Chen, S. McCouch
1995Genome108 citations
Semantic Scholar
Abiotic stress and genome dynamics: specific genes and transposable elements response to iron excess in rice
T. Finatto, A. D. de Oliveira, C. Chaparro, L. D. da Maia +7 more
2015Rice99 citations Open access
Semantic Scholar
Genome size and base composition of seven Quercus species: inter- and intra-population variation
V. Zoldoš, D. Papeš, S. Brown, O. Panaud +1 more
199894 citations
Semantic Scholar
The impact of transposable elements on the structure, evolution and function of the rice genome.
R. Akakpo, M. Carpentier, Y. Hsing, O. Panaud
2019New Phytologist75 citations Open access
Semantic Scholar
Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data.
F. Sabot, N. Picault, Moaine El Baidouri, Christel Llauro +7 more
2011The Plant Journal73 citations Open access
Semantic Scholar
Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza.
A. Roulin, Benoı̂t Piégu, R. Wing, O. Panaud
2007The Plant Journal73 citations
Semantic Scholar
Identification of an active LTR retrotransposon in rice.
N. Picault, C. Chaparro, Benoı̂t Piégu, Willfried Stenger +8 more
2009The Plant Journal70 citations
Semantic Scholar
Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants
Sophie Lanciano, M. Carpentier, Christel Llauro, E. Jobet +5 more
2017PLoS Genetics66 citations Open access
Semantic Scholar
RiTE database: a resource database for genus-wide rice genomics and evolutionary biology
D. Copetti, Jian-Wei Zhang, Moaine El Baidouri, Dong-Ying Gao +20 more
2015BMC Genomics66 citations Open access
Semantic Scholar
Plant root transcriptome profiling reveals a strain-dependent response during Azospirillum-rice cooperation
Benoît Drogue, H. Sanguin, Amel Chamam, Michael Mozar +5 more
2014Frontiers in Plant Science66 citations Open access
Semantic Scholar
Whole genome surveys of rice, maize and sorghum reveal multiple horizontal transfers of the LTR-retrotransposon Route66 in Poaceae
A. Roulin, Benoı̂t Piégu, P. Fortune, F. Sabot +3 more
2009BMC Evolutionary Biology65 citations Open access
Semantic Scholar
RetrOryza: a database of the rice LTR-retrotransposons
C. Chaparro, R. Guyot, A. Zuccolo, Benoı̂t Piégu +1 more
2006Nucleic Acids Res.61 citations Open access
Semantic Scholar
A Genetic Model for the Female Sterility Barrier Between Asian and African Cultivated Rice Species
Andréa Garavito, R. Guyot, Jaime Lozano, F. Gavory +5 more
2010Genetics57 citations Open access
Semantic Scholar
A unified classification system for eukaryotic transposable elements should reflect their phylogeny.
T. Wicker, F. Sabot, A. Hua-Van, J. Bennetzen +9 more
200955 citations
Semantic Scholar
DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses
T. Wicker, Yeisoo Yu, G. Haberer, K. Mayer +7 more
2016Nature Communications52 citations Open access
Semantic Scholar
Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice
S. Lacombe, H. Nagasaki, Carole Santi, D. Duval +12 more
2008BMC Plant Biology52 citations Open access
Semantic Scholar
Characterization of transposable elements in the genome of rice (Oryza sativa L.) using Representational Difference Analysis (RDA)
O. Panaud, C. Vitte, J. Hivert, S. Muzlak +3 more
2002Zeitschrift für Induktive Abstammungs- und Vererbungslehre48 citations
Semantic Scholar
Horizontal transfers of transposable elements in eukaryotes: The flying genes.
O. Panaud
2016Comptes rendus. Biologies47 citations Open access
Semantic Scholar
Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology
Emilie Debladis, Christel Llauro, M. Carpentier, Marie Mirouze +1 more
2017BMC Genomics43 citations Open access
Semantic Scholar
Horizontal transfer of transposable elements in plants
P. Fortune, A. Roulin, O. Panaud
2008Communicative & Integrative Biology43 citations Open access
Semantic Scholar
Brief communication. First evaluation of nuclear DNA content in Setaria genus by flow cytometry
M. Le Thierry D'Ennequin, O. Panaud, Spencer C. Brown, S. Siljak-Yakovlev +1 more
199835 citations Open access
Semantic Scholar
A universal classification of eukaryotic transposable elements implemented in Repbase
T. Wicker, F. Sabot, A. Hua-Van, J. Bennetzen +9 more
2008Nature reviews genetics34 citations
Semantic Scholar
Horizontal Gene Transfers in Plants
Emilie Aubin, Moaine El Baidouri, O. Panaud
2021Life32 citations Open access
Semantic Scholar
A new approach for annotation of transposable elements using small RNA mapping
Moaine El Baidouri, Kyung Do Kim, Brian Abernathy, S. Arikit +4 more
2015Nucleic Acids Research32 citations Open access
Semantic Scholar
Phylogenetic relationships and selective pressure on gene families related to iron homeostasis in land plants.
Filipe de Carvalho Victoria, Clauber Mateus Priebe Bervald, L. D. da Maia, R. O. de Sousa +2 more
2012Genome32 citations
Semantic Scholar
Reply: A unified classification system for eukaryotic transposable elements should reflect their phylogeny
T. Wicker, F. Sabot, A. Hua-Van, J. Bennetzen +9 more
2009Nature reviews genetics31 citations
Semantic Scholar

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