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J. Stein · SciRah

Researcher profile · Semantic Scholar

J. Stein

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J. Stein — researcher profile on SciRah

h-index: 34
Works: 49
Citations: 13K

Most-cited papers

The B73 Maize Genome: Complexity, Diversity, and Dynamics
P. Schnable, D. Ware, R. Fulton, J. Stein +153 more
2009Science3,949 citations
Semantic Scholar
Improved maize reference genome with single-molecule technologies
Yinping Jiao, P. Peluso, Jinghua Shi, T. Liang +24 more
2017Nature1,090 citations Open access
Semantic Scholar
Evidence for Network Evolution in an Arabidopsis Interactome Map
M. Dreze, A. Carvunis, B. Charloteaux, M. Galli +60 more
2011Science900 citations Open access
Semantic Scholar
Molecular cloning of a putative receptor protein kinase gene encoded at the self-incompatibility locus of Brassica oleracea.
J. Stein, B. Howlett, D. Boyes, M. E. Nasrallah +1 more
1991Proceedings of the National Academy of Sciences of the United States of America721 citations Open access
Semantic Scholar
Ensembl Genomes 2016: more genomes, more complexity
P. Kersey, James E. Allen, I. Armean, Sanjay Boddu +34 more
2015Nucleic Acids Res.511 citations Open access
Semantic Scholar
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing
Bo Wang, Elizabeth Tseng, M. Regulski, Tyson A. Clark +6 more
2016Nature Communications503 citations Open access
Semantic Scholar
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
J. Stein, Yeisoo Yu, D. Copetti, D. Zwickl +61 more
2018Nature Genetics474 citations Open access
Semantic Scholar
Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species
P. Kersey, James E. Allen, Alexis Allot, Matthieu Barba +42 more
2017Nucleic Acids Res.442 citations Open access
Semantic Scholar
MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations1[W][OPEN]
Michael Campbell, M. Law, C. Holt, J. Stein +12 more
2013Plant Physiology397 citations Open access
Semantic Scholar
A Genome-Wide Characterization of MicroRNA Genes in Maize
Li-Fang Zhang, Jer-Ming Chia, Sunita Kumari, J. Stein +6 more
2009PLoS Genetics365 citations Open access
Semantic Scholar
Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes
Si-Long Sun, Ying-Si Zhou, Jian Chen, Junpeng Shi +23 more
2018Nature Genetics343 citations Open access
Semantic Scholar
Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor.
Ruth A. Swanson-Wagner, S. Eichten, Sunita Kumari, P. Tiffin +3 more
2010Genome Research313 citations Open access
Semantic Scholar
Rothamsted Repository Download
A. Cuzick, B. J., K. Howe, B. Contreras-Moreira +52 more
308 citations
Semantic Scholar
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica
M. Schatz, Lyza G. Maron, J. Stein, A. Wences +11 more
2014Genome Biology266 citations Open access
Semantic Scholar
Engineering Vitamin E Content: From Arabidopsis Mutant to Soy Oil Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.015875.
Alison L. Van Eenennaam, Kim Lincoln, T. Durrett, H. Valentin +10 more
2003The Plant Cell Online263 citations Open access
Semantic Scholar
Ensembl Genomes 2013: scaling up access to genome-wide data
P. Kersey, James E. Allen, Mikkel B. Christensen, Paul Davis +29 more
2013Nucleic Acids Res.227 citations Open access
Semantic Scholar
A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor
Ming-Cheng Luo, Y. Gu, F. You, K. Deal +27 more
2013Proceedings of the National Academy of Sciences of the United States of America206 citations Open access
Semantic Scholar
The maize W22 genome provides a foundation for functional genomics and transposon biology
N. Springer, Sarah N. Anderson, C. Andorf, K. Ahern +50 more
2018Nature Genetics199 citations Open access
Semantic Scholar
Gramene database in 2010: updates and extensions
Ken Youens-Clark, E. Buckler, T. Casstevens, Charles Chen +14 more
2010Nucleic Acids Res.188 citations Open access
Semantic Scholar
Gramene 2013: comparative plant genomics resources
Marcela K. Monaco, J. Stein, S. Naithani, Sharon Wei +22 more
2013Nucleic Acids Res.182 citations Open access
Semantic Scholar
SRK, the stigma-specific S locus receptor kinase of Brassica, is targeted to the plasma membrane in transgenic tobacco.
J. Stein, R. Dixit, M. E. Nasrallah, J. Nasrallah
1996The Plant Cell151 citations Open access
Semantic Scholar
Gramene 2018: unifying comparative genomics and pathway resources for plant research
M. Tello-Ruiz, S. Naithani, J. Stein, Parul Gupta +35 more
2017Nucleic Acids Res.138 citations Open access
Semantic Scholar
Gramene 2016: comparative plant genomics and pathway resources
M. Tello-Ruiz, J. Stein, Sharon Wei, Justin Preece +28 more
2015Nucleic Acids Res.133 citations Open access
Semantic Scholar
Signaling the Arrest of Pollen Tube Development in Self-Incompatible Plants
J. Nasrallah, J. Stein, M. K. Kandasamy, M. E. Nasrallah
1994Science108 citations
Semantic Scholar
Ensembl Genomes 2020—enabling non-vertebrate genomic research
K. Howe, B. Contreras-Moreira, Nishadi H. De Silva, Gareth Maslen +51 more
2019Nucleic Acids Res.96 citations Open access
Semantic Scholar
Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats
T. Wicker, A. Narechania, F. Sabot, J. Stein +4 more
2008BMC Genomics89 citations Open access
Semantic Scholar
Transgene‐induced silencing of S‐locus genes and related genes in Brassica
Joann Conner, Titima Tantikanjana, J. Stein, M. K. Kandasamy +2 more
199782 citations Open access
Semantic Scholar
Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways.
M. Tello-Ruiz, J. Stein, Sharon Wei, Ken Youens-Clark +2 more
2016Methods in molecular biology62 citations
Semantic Scholar
Gramene Database: Navigating Plant Comparative Genomics Resources
Parul Gupta, S. Naithani, M. Tello-Ruiz, K. Chougule +18 more
2016Current Plant Biology56 citations Open access
Semantic Scholar
Effect of sequence depth and length in long-read assembly of the maize inbred NC358
Shujun Ou, Jianing Liu, K. Chougule, A. Fungtammasan +20 more
2020Nature Communications53 citations Open access
Semantic Scholar
Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes1[OPEN]
M. Law, K. Childs, Michael Campbell, J. Stein +12 more
2014Plant Physiology49 citations Open access
Semantic Scholar
Detailed Analysis of a Contiguous 22-Mb Region of the Maize Genome
Fusheng Wei, J. Stein, Cheng-Zhi Liang, Jian-Wei Zhang +51 more
2009PLoS Genetics47 citations Open access
Semantic Scholar
A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes
Stefan Kurtz, A. Narechania, J. Stein, Doreen Ware
2008BMC Genomics45 citations Open access
Semantic Scholar
Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3.
D. Zwickl, J. Stein, R. Wing, D. Ware +1 more
2014Systematic Biology42 citations Open access
Semantic Scholar
Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum
Barbara L. Hass-Jacobus, Montona Futrell-Griggs, Brian Abernathy, R. Westerman +18 more
2006BMC Genomics17 citations Open access
Semantic Scholar
The complex sequence landscape of maize revealed by single molecule technologies
Yinping Jiao, P. Peluso, Jinghua Shi, T. Liang +24 more
2016bioRxiv14 citations Open access
Semantic Scholar
Gene disruption by structural mutations drives selection in US rice breeding over the last century
Justin N. Vaughn, W. Korani, J. Stein, Jeremy D. Edwards +8 more
2020bioRxiv11 citations Open access
Semantic Scholar
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica
M. Schatz, Lyza G. Maron, J. Stein, A. Wences +11 more
2014Genome Biology8 citations Open access
Semantic Scholar
Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
J. Stein, Yeisoo Yu, D. Copetti, D. Zwickl +61 more
2018Nature Genetics7 citations Open access
Semantic Scholar
Improved RNA‐seq Workflows Using CyVerse Cyberinfrastructure
K. Chougule, Liya Wang, J. Stein, Xiao-Fei Wang +3 more
2018Current Protocols in Bioinformatics3 citations
Semantic Scholar
New whole genome de novo assemblies of three divergent strains of rice (O. sativa) documents novel gene space of aus and indica
Michael C. Schatz, Lyza G. Maron, J. Stein, A. Wences +11 more
2014bioRxiv3 citations Open access
Semantic Scholar
Effect of Sequence Depth and Length in Long-read Assembly of the Maize Inbred NC358
Shujun Ou, Jianing Liu, K. Chougule, A. Fungtammasan +20 more
2019bioRxiv1 citations Open access
Semantic Scholar
US-4846-15 C Investigation of growth regulation by maize benzoxazinoid breakdown products
N. Springer, C. Andorf, Omer Barad, W. B. Barbazuk +31 more
20200 citations
Semantic Scholar
of and wild rice relatives highlight genetic conservation, turnover and innovation across the genus
J. Stein, Yeisoo Yu, D. Copetti, D. Zwickl +49 more
20180 citations
Semantic Scholar
Tello-RuizGramene2016Comparative.pdf
M. Tello-Ruiz, J. Stein, Sharon Wei, Justin Preece +28 more
20170 citations
Semantic Scholar
Choi Graphene Driven Domain Imaging on Exfoliated Monolayer − Friction Anisotropy
S. Patnaik, R. Quan, G. Ramaswamy, P. Shinn +44 more
20140 citations
Semantic Scholar
SRK, the Stigma-Specific S Brassica, 1s Targeted to the Transgenic Tobacco Locus Receptor Kinase of Plasma Membrane in
J. Stein, R. Dixit, M. E. Nasrallah, J. Nasrallah
20020 citations
Semantic Scholar
Srk: S-locus receptor PK (Brassica spp.)
J. Stein, J. Nasrallah
19950 citations
Semantic Scholar
Evidence for Network Evolution in an Arabidopsis Interactome Map
M. Duarte, F. Gebreab, B. Gutierrez, A. Macwilliams +12 more
0 citations
Semantic Scholar

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