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T. Terada · SciRah

Researcher profile · Semantic Scholar

T. Terada

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T. Terada — researcher profile on SciRah

h-index: 31
Works: 268
Citations: 3,196

Most-cited papers

Trisaccharide containing α2,3-linked sialic acid is a receptor for mumps virus
M. Kubota, K. Takeuchi, S. Watanabe, S. Ohno +12 more
2016Proceedings of the National Academy of Sciences of the United States of America97 citations Open access
Semantic Scholar
Minimum Free Energy Path of Ligand-Induced Transition in Adenylate Kinase
Y. Matsunaga, H. Fujisaki, T. Terada, T. Furuta +2 more
2012PLoS Comput. Biol.92 citations Open access
Semantic Scholar
Disorder-to-order transition of an intrinsically disordered region of sortase revealed by multiscale enhanced sampling.
K. Moritsugu, T. Terada, A. Kidera
2012Journal of the American Chemical Society69 citations
Semantic Scholar
Outward open conformation of a Major Facilitator Superfamily multidrug/H+ antiporter provides insights into switching mechanism
K. Nagarathinam, Yoshiko Nakada-Nakura, C. Parthier, T. Terada +10 more
2018Nature Communications61 citations Open access
Semantic Scholar
Cryo-EM structures of undocked innexin-6 hemichannels in phospholipids
B. Burendei, R. Shinozaki, M. Watanabe, T. Terada +3 more
2020Science Advances55 citations Open access
Semantic Scholar
Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids
M. Kuzuya, H. Hirano, K. Hayashida, M. Watanabe +7 more
2022Science Signaling51 citations
Semantic Scholar
Structural insights into modulation and selectivity of transsynaptic neurexin–LRRTM interaction
A. Yamagata, S. Goto-Ito, Yusuke Sato, T. Shiroshima +8 more
2018Nature Communications45 citations Open access
Semantic Scholar
Uptake mechanism of iron-phytosiderophore from the soil based on the structure of yellow stripe transporter
A. Yamagata, Yoshiko Murata, Kosuke Namba, T. Terada +2 more
2022Nature Communications42 citations Open access
Semantic Scholar
Structural basis for the assembly and electron transport mechanisms of the dimeric photosynthetic RC–LH1 supercomplex
P. Cao, L. Bracun, A. Yamagata, Bern M. Christianson +7 more
2021bioRxiv42 citations Open access
Semantic Scholar
NRBP1-Containing CRL2/CRL4A Regulates Amyloid β Production by Targeting BRI2 and BRI3 for Degradation.
T. Yasukawa, Aya Tsutsui, C. Tomomori-Sato, S. Sato +8 more
2020Cell Reports39 citations Open access
Semantic Scholar
Free-Energy Landscape of Protein-Ligand Interactions Coupled with Protein Structural Changes.
K. Moritsugu, T. Terada, A. Kidera
2017Journal of Physical Chemistry B38 citations
Semantic Scholar
Mechanism of self/nonself-discrimination in Brassica self-incompatibility
K. Murase, Yoshitaka Moriwaki, Tomoyuki Mori, Xiao Liu +14 more
2020Nature Communications36 citations Open access
Semantic Scholar
Calculation of absolute binding free energies between the hERG channel and structurally diverse drugs
Tatsuki Negami, M. Araki, Y. Okuno, T. Terada
2019Scientific Reports36 citations Open access
Semantic Scholar
Energetics and conformational pathways of functional rotation in the multidrug transporter AcrB
Y. Matsunaga, T. Yamane, T. Terada, K. Moritsugu +4 more
2017bioRxiv34 citations Open access
Semantic Scholar
Cryo-EM structure of the photosynthetic RC-LH1-PufX supercomplex at 2.8-Å resolution
L. Bracun, A. Yamagata, Bern M. Christianson, T. Terada +3 more
2021Science Advances33 citations Open access
Semantic Scholar
Crystal Structure of the 3.8-MDa Respiratory Supermolecule Hemocyanin at 3.0 Å Resolution.
Z. Gai, A. Matsuno, Koji Kato, Sanae Kato +10 more
2015Structure31 citations Open access
Semantic Scholar
Comparative analysis of membrane protein structure databases.
K. Shimizu, W. Cao, Gul Saad, M. Shoji +1 more
2018Biochimica et Biophysica Acta - Biomembranes30 citations Open access
Semantic Scholar
Coarse‐grained molecular dynamics simulations of protein–ligand binding
Tatsuki Negami, K. Shimizu, T. Terada
2014Journal of Computational Chemistry30 citations
Semantic Scholar
Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family
T. Kashima, Kouki Okumura, A. Ishiwata, Machika Kaieda +9 more
2021Journal of Biological Chemistry29 citations Open access
Semantic Scholar
Mechanism for folate‐independent aldolase reaction catalyzed by serine hydroxymethyltransferase
Y. Chiba, T. Terada, Masafumi Kameya, K. Shimizu +3 more
2012The FEBS Journal29 citations Open access
Semantic Scholar
Chemigenetic indicators based on synthetic chelators and green fluorescent protein
Wenchao Zhu, S. Takeuchi, Shosei Imai, T. Terada +4 more
2022Nature Chemical Biology27 citations
Semantic Scholar
Heme binding mechanism of structurally similar iron-regulated surface determinant near transporter domains of Staphylococcus aureus exhibiting different affinities for heme.
Yoshitaka Moriwaki, T. Terada, José M. M. Caaveiro, Yousuke Takaoka +3 more
2013Biochemistry26 citations
Semantic Scholar
Quercetin 3,5,7,3′,4′-pentamethyl ether from Kaempferia parviflora directly and effectively activates human SIRT1
Mimin Zhang, Peng Lu, T. Terada, Miaomiao Sui +15 more
2021Communications Biology25 citations Open access
Semantic Scholar
Development of a deep learning-based method to identify “good” regions of a cryo-electron microscopy grid
Yuichi Yokoyama, T. Terada, K. Shimizu, Kouki Nishikawa +5 more
2020Biophysical Reviews24 citations Open access
Semantic Scholar
Selective binding of antimicrobial porphyrins to the heme‐receptor IsdH‐NEAT3 of Staphylococcus aureus
N. Vu, Yoshitaka Moriwaki, Jose M. M. Caaveiro, T. Terada +4 more
2013Protein Science24 citations Open access
Semantic Scholar
Understanding the molecular mechanism underlying the high catalytic activity of p-hydroxybenzoate hydroxylase mutants for producing gallic acid.
Yoshitaka Moriwaki, M. Yato, T. Terada, S. Saito +9 more
2019Biochemistry23 citations
Semantic Scholar
Comparative molecular dynamics simulation study of crystal environment effect on protein structure.
T. Terada, A. Kidera
2012Journal of Physical Chemistry B23 citations
Semantic Scholar
Structural and Molecular Basis of the Catalytic Mechanism of Geranyl Pyrophosphate C-6 Methyltransferase: Creation of an Unprecedented Farnesyl Pyrophosphate C-6 Methyltransferase.
Hayama Tsutsumi, Yoshitaka Moriwaki, T. Terada, K. Shimizu +3 more
2021Angewandte Chemie22 citations
Semantic Scholar
A new method for evaluating the specificity of indirect readout in protein–DNA recognition
S. Yamasaki, T. Terada, H. Kono, K. Shimizu +1 more
2012Nucleic Acids Research20 citations Open access
Semantic Scholar
Identification and Modulation of the Key Amino Acid Residue Responsible for the pH Sensitivity of Neoculin, a Taste-Modifying Protein
K. Nakajima, Kanako Yokoyama, Taichi Koizumi, Ayako Koizumi +7 more
2011PLoS ONE20 citations Open access
Semantic Scholar
Long-Chain Fatty Acids Elicit a Bitterness-Masking Effect on Quinine and Other Nitrogenous Bitter Substances by Formation of Insoluble Binary Complexes.
Kayako Ogi, Haruyuki Yamashita, T. Terada, Ryousuke Homma +5 more
2015Journal of Agricultural and Food Chemistry19 citations Open access
Semantic Scholar
EXPRORER: Rational Cosolvent Set Construction Method for Cosolvent Molecular Dynamics Using Large-Scale Computation
Keisuke Yanagisawa, Yoshitaka Moriwaki, T. Terada, K. Shimizu
2021Journal of Chemical Information and Modeling18 citations Open access
Semantic Scholar
Identification, characterization, and structural analyses of a fungal endo-β-1,2-glucanase reveal a new glycoside hydrolase family
N. Tanaka, M. Nakajima, Megumi Narukawa-Nara, Hiroki Matsunaga +13 more
2019Journal of Biological Chemistry18 citations Open access
Semantic Scholar
Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout
Shohei Nosaki, N. Mitsuda, Shingo Sakamoto, K. Kusubayashi +8 more
2022Nature Plants16 citations
Semantic Scholar
Energy Landscape of All-Atom Protein-Protein Interactions Revealed by Multiscale Enhanced Sampling
K. Moritsugu, T. Terada, A. Kidera
2014PLoS Comput. Biol.16 citations Open access
Semantic Scholar
Development of a sugar-binding residue prediction system from protein sequences using support vector machine
Masaki Banno, Yusuke Komiyama, W. Cao, Y. Oku +5 more
2017Comput. Biol. Chem.15 citations Open access
Semantic Scholar
Substrate recognition mechanism of tRNA-targeting ribonuclease, colicin D, and an insight into tRNA cleavage-mediated translation impairment
T. Ogawa, Kazutoshi Takahashi, Wataru Ishida, T. Aono +3 more
2020RNA Biology14 citations Open access
Semantic Scholar
Oligomerization Mechanisms of an H-NS Family Protein, Pmr, Encoded on the Plasmid pCAR1 Provide a Molecular Basis for Functions of H-NS Family Members
Chiho Suzuki, Kohei Kawazuma, S. Horita, T. Terada +4 more
2014PLoS ONE14 citations Open access
Semantic Scholar
Multiscale enhanced sampling driven by multiple coarse-grained models
K. Moritsugu, T. Terada, A. Kidera
201414 citations
Semantic Scholar
Prediction and analysis of antifreeze proteins
Ryosuke Miyata, Yoshitaka Moriwaki, T. Terada, K. Shimizu
2021Heliyon13 citations Open access
Semantic Scholar
Coarse-grained molecular dynamics simulation of protein conformational change coupled to ligand binding
Tatsuki Negami, K. Shimizu, T. Terada
2020Chemical Physics Letters13 citations
Semantic Scholar
Structurally-discovered KLF4 variants accelerate and stabilize reprogramming to pluripotency
Evgeniia Borisova, K. Nishimura, Yu-hui An, Miho Takami +12 more
2020iScience13 citations Open access
Semantic Scholar
Development of a protein–ligand-binding site prediction method based on interaction energy and sequence conservation
H. Tsujikawa, Kenta Sato, Cao Wei, Gul Saad +4 more
2016Journal of Structural and Functional Genomics13 citations Open access
Semantic Scholar
Structural similarities and differences in H‐NS family proteins revealed by the N‐terminal structure of TurB in Pseudomonas putida KT2440
C. Suzuki-Minakuchi, Kohei Kawazuma, J. Matsuzawa, Delyana P. Vasileva +4 more
2016FEBS Letters13 citations Open access
Semantic Scholar
Feedback-AVPGAN: Feedback-guided generative adversarial network for generating antiviral peptides
K. Hasegawa, Yoshitaka Moriwaki, T. Terada, Cao Wei +1 more
2022J. Bioinform. Comput. Biol.12 citations Open access
Semantic Scholar
Rapid Heme Transfer Reactions between NEAr Transporter Domains of Staphylococcus aureus: A Theoretical Study Using QM/MM and MD Simulations
Yoshitaka Moriwaki, T. Terada, K. Tsumoto, K. Shimizu
2015PLoS ONE12 citations Open access
Semantic Scholar
Identification of key neoculin residues responsible for the binding and activation of the sweet taste receptor
Taichi Koizumi, T. Terada, K. Nakajima, M. Kojima +7 more
2015Scientific Reports12 citations Open access
Semantic Scholar
Multiscale enhanced sampling for protein systems: An extension via adiabatic separation
K. Moritsugu, T. Terada, A. Kidera
201611 citations
Semantic Scholar
Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Nonheme Iron Oxygenase Carbazole 1,9a-Dioxygenase
K. Inoue, Y. Usami, Y. Ashikawa, Haruko Noguchi +11 more
2014Applied and Environmental Microbiology11 citations Open access
Semantic Scholar
Cryptic Oxidative Transamination of Hydroxynaphthoquinone in Natural Product Biosynthesis.
Tomohiro Noguchi, Shota Isogai, T. Terada, M. Nishiyama +1 more
2022Journal of the American Chemical Society9 citations
Semantic Scholar

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K. Shimizu×22
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K. Shimizu — researcher profile on SciRah
Yoshitaka Moriwaki×9
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Yoshitaka Moriwaki — researcher profile on SciRah
A. Kidera×8
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A. Kidera — researcher profile on SciRah
K. Moritsugu×7
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K. Moritsugu — researcher profile on SciRah

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A. Yamagata — researcher profile on SciRah

Tatsuki Negami×4

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T. Asakura — researcher profile on SciRah

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K. Tani — researcher profile on SciRah

Y. Fujiyoshi×3

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M. Shirouzu — researcher profile on SciRah

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K. Tsumoto — researcher profile on SciRah

A. Shimizu-Ibuka×3

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A. Shimizu-Ibuka — researcher profile on SciRah