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M. Nishiyama · SciRah

Researcher profile · Semantic Scholar

M. Nishiyama

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M. Nishiyama — researcher profile on SciRah

h-index: 45
Works: 303
Citations: 8,605

Most-cited papers

An unusual terpene cyclization mechanism involving a carbon-carbon bond rearrangement.
Ayuko Meguro, Y. Motoyoshi, Kazuya Teramoto, Shota Ueda +10 more
2015Angewandte Chemie90 citations
Semantic Scholar
Discovery of Unprecedented Hydrazine-Forming Machinery in Bacteria.
K. Matsuda, T. Tomita, K. Shin-ya, T. Wakimoto +2 more
2018Journal of the American Chemical Society78 citations
Semantic Scholar
Altered acetylation and succinylation profiles in Corynebacterium glutamicum in response to conditions inducing glutamate overproduction
Yuta Mizuno, Megumi Nagano-Shoji, Shosei Kubo, Yumi Kawamura +5 more
2015MicrobiologyOpen66 citations Open access
Semantic Scholar
“Cation-Stitching Cascade”: exquisite control of terpene cyclization in cyclooctatin biosynthesis
Hajime Sato, Kazuya Teramoto, Y. Masumoto, Noriyuki Tezuka +8 more
2015Scientific Reports50 citations Open access
Semantic Scholar
A bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem
Toshihiko Katoh, C. Yamada, Michael D. Wallace, A. Yoshida +18 more
2023Nature Chemical Biology44 citations Open access
Semantic Scholar
Structural Insights into the CotB2-Catalyzed Cyclization of Geranylgeranyl Diphosphate to the Diterpene Cyclooctat-9-en-7-ol.
T. Tomita, Seung-Young Kim, Kazuya Teramoto, Ayuko Meguro +8 more
2017ACS Chemical Biology42 citations Open access
Semantic Scholar
Genome Mining of Amino Group Carrier Protein-Mediated Machinery: Discovery and Biosynthetic Characterization of a Natural Product with Unique Hydrazone Unit.
K. Matsuda, F. Hasebe, Yuh Shiwa, Y. Kanesaki +5 more
2017ACS Chemical Biology41 citations Open access
Semantic Scholar
Amino-group carrier-protein-mediated secondary metabolite biosynthesis in Streptomyces.
F. Hasebe, K. Matsuda, Taro Shiraishi, Y. Futamura +9 more
2016Nature Chemical Biology36 citations
Semantic Scholar
Soy and Arabidopsis receptor-like kinases respond to polysaccharide signals from Spodoptera species and mediate herbivore resistance
Takuya Uemura, Masakazu Hachisu, Y. Desaki, Ayaka Ito +13 more
2020Communications Biology35 citations Open access
Semantic Scholar
The Amipurimycin and Miharamycin Biosynthetic Gene Clusters: Unraveling the Origins of 2-Aminopurinyl Peptidyl Nucleoside Antibiotics
A. Romo, Taro Shiraishi, Hideo Ikeuchi, Geng-min Lin +9 more
2019Journal of the American Chemical Society34 citations Open access
Semantic Scholar
An Unusual Skeletal Rearrangement in the Biosynthesis of the Sesquiterpene Trichobrasilenol from Trichoderma
Keiichiro Murai, Lukas Lauterbach, Kazuya Teramoto, Zhi-Yang Quan +7 more
2019Angewandte Chemie33 citations Open access
Semantic Scholar
Biosynthetic Origin of the Hydroxamic Acid Moiety of Trichostatin A: Identification of Unprecedented Enzymatic Machinery Involved in Hydroxylamine Transfer.
K. Kudo, T. Ozaki, K. Shin-ya, M. Nishiyama +1 more
2017Journal of the American Chemical Society32 citations Open access
Semantic Scholar
A Natural Dihydropyridazinone Scaffold Generated from a Unique Substrate for a Hydrazine-Forming Enzyme.
K. Matsuda, Arima Kuga, Satoko Akiyama, Yuito Yamada +6 more
2022Journal of the American Chemical Society26 citations
Semantic Scholar
Immune gene activation by NPR and TGA transcriptional regulators in the model monocot Brachypodium distachyon.
Kohei Shimizu, Hitomi Suzuki, Takuya Uemura, A. Nozawa +8 more
2022The Plant Journal22 citations
Semantic Scholar
A suicide enzyme catalyzes multiple reactions for biotin biosynthesis in cyanobacteria
K. Sakaki, K. Ohishi, T. Shimizu, Ikki Kobayashi +7 more
2020Nature Chemical Biology22 citations
Semantic Scholar
Lysine Biosynthesis of Thermococcus kodakarensis with the Capacity to Function as an Ornithine Biosynthetic System*
A. Yoshida, T. Tomita, H. Atomi, T. Kuzuyama +1 more
2016Journal of Biological Chemistry22 citations Open access
Semantic Scholar
Characterization of lysine acetylation of a phosphoenolpyruvate carboxylase involved in glutamate overproduction in Corynebacterium glutamicum
Megumi Nagano-Shoji, Yuma Hamamoto, Yuta Mizuno, Ayuka Yamada +6 more
2017Molecular Microbiology21 citations
Semantic Scholar
Characterization of bafilomycin biosynthesis in Kitasatospora setae KM-6054 and comparative analysis of gene clusters in Actinomycetales microorganisms
A. Nara, T. Hashimoto, M. Komatsu, M. Nishiyama +2 more
2017Journal of antibiotics (Tokyo. 1968)20 citations Open access
Semantic Scholar
Molecular Basis for Enzymatic Aziridine Formation via Sulfate Elimination.
S. Kurosawa, F. Hasebe, Hironori Okamura, A. Yoshida +8 more
2022Journal of the American Chemical Society19 citations
Semantic Scholar
Reconstitution of a Highly Reducing Type II PKS System Reveals 6π-Electrocyclization Is Required for o-Dialkylbenzene Biosynthesis.
Jie Zhang, S. Yuzawa, W. Thong, T. Shinada +2 more
2021Journal of the American Chemical Society18 citations
Semantic Scholar
Fosfomycin Biosynthesis via Transient Cytidylylation of 2-Hydroxyethylphosphonate by the Bifunctional Fom1 Enzyme.
Su-Hee Cho, Seung-Young Kim, T. Tomita, Taro Shiraishi +7 more
2017ACS Chemical Biology18 citations
Semantic Scholar
Dynamic changes in lysine acetylation and succinylation of the elongation factor Tu in Bacillus subtilis.
Shota Suzuki, Naoko Kondo, M. Yoshida, M. Nishiyama +1 more
2019Microbiology17 citations Open access
Semantic Scholar
Discovery of unprecedented carbazole alkaloid-synthesizing machinery in Streptomyces.
M. Kobayashi, T. Tomita, K. Shin-ya, M. Nishiyama +1 more
2019Angewandte Chemie16 citations
Semantic Scholar
Characterization of two 2-isopropylmalate synthase homologs from Thermus thermophilus HB27.
A. Yoshida, Saori Kosono, M. Nishiyama
2018Biochemical and Biophysical Research Communications - BBRC16 citations
Semantic Scholar
Crystal structure of the 2‐iminoglutarate‐bound complex of glutamate dehydrogenase from Corynebacterium glutamicum
T. Tomita, L. Yin, Shugo Nakamura, Saori Kosono +2 more
2017FEBS Letters16 citations Open access
Semantic Scholar
Structure and Mechanism of the Monoterpene Cyclolavandulyl Diphosphate Synthase that Catalyzes Consecutive Condensation and Cyclization.
T. Tomita, M. Kobayashi, Yuma Karita, Yoko Yasuno +3 more
2017Angewandte Chemie16 citations
Semantic Scholar
Comprehensive Derivatization of Thioviridamides by Heterologous Expression.
K. Kudo, Hanae Koiwai, N. Kagaya, M. Nishiyama +3 more
2019ACS Chemical Biology15 citations
Semantic Scholar
Discovery of an Antibacterial Isoindolinone-Containing Tetracyclic Polyketide by Cryptic Gene Activation and Characterization of Its Biosynthetic Gene Cluster.
W. Thong, K. Shin-ya, M. Nishiyama, T. Kuzuyama
2018ACS Chemical Biology15 citations Open access
Semantic Scholar
The hematopoietic cell-specific transcription factor PU.1 is critical for expression of CD11c
T. Yashiro, K. Kasakura, Yoshihito Oda, Nao Kitamura +9 more
2017International Immunology15 citations
Semantic Scholar
Methylbenzene-Containing Polyketides from a Streptomyces that Spontaneously Acquired Rifampicin Resistance: Structural Elucidation and Biosynthesis.
W. Thong, K. Shin-ya, M. Nishiyama, T. Kuzuyama
2016Journal of Natural Products14 citations Open access
Semantic Scholar
Effect of lysine succinylation on the regulation of 2-oxoglutarate dehydrogenase inhibitor, OdhI, involved in glutamate production in Corynebacterium glutamicum
Ayano Komine-Abe, Megumi Nagano-Shoji, Shosei Kubo, H. Kawasaki +3 more
2017Bioscience, biotechnology and biochemistry13 citations Open access
Semantic Scholar
Pollen shells and soluble factors play non-redundant roles in the development of allergic conjunctivitis in mice.
Saaya Fukase, T. Ando, Moe Matsuzawa, M. Kimura +14 more
2021The ocular surface12 citations Open access
Semantic Scholar
In vitro reconstitution and characterization of pyruvate dehydrogenase and 2‐oxoglutarate dehydrogenase hybrid complex from Corynebacterium glutamicum
Hirokazu Kinugawa, Naoko Kondo, Ayano Komine-Abe, T. Tomita +2 more
2020MicrobiologyOpen12 citations Open access
Semantic Scholar
An ornithine ω-aminotransferase required for growth in the absence of exogenous proline in the archaeon Thermococcus kodakarensis
Ren-Chao Zheng, S. Hachisuka, H. Tomita, T. Imanaka +3 more
2018Journal of Biological Chemistry11 citations Open access
Semantic Scholar
Biosynthesis of the antituberculous agent caprazamycin: Identification of caprazol-3"-phosphate, an unprecedented caprazamycin-related metabolite.
Taro Shiraishi, Noboru Hiro, M. Igarashi, M. Nishiyama +1 more
2016Journal of General and Applied Microbiology10 citations Open access
Semantic Scholar
Cryptic Oxidative Transamination of Hydroxynaphthoquinone in Natural Product Biosynthesis.
Tomohiro Noguchi, Shota Isogai, T. Terada, M. Nishiyama +1 more
2022Journal of the American Chemical Society9 citations
Semantic Scholar
Complete Biosynthetic Pathway of the Phosphonate Phosphonothrixin: Two Distinct Thiamine Diphosphate-Dependent Enzymes Divide the Work to Form a C-C Bond.
Yuxun Zhu, Taro Shiraishi, J. Lin, Keito Inaba +4 more
2022Journal of the American Chemical Society9 citations
Semantic Scholar
Biosynthesis of the uridine-derived nucleoside antibiotic A-94964: identification and characterization of the biosynthetic gene cluster provide insight into the biosynthetic pathway.
Taro Shiraishi, M. Nishiyama, T. Kuzuyama
2019Organic and biomolecular chemistry9 citations
Semantic Scholar
Crystal Structure of the LysY·LysW Complex from Thermus thermophilus*
T. Shimizu, T. Tomita, T. Kuzuyama, M. Nishiyama
2016Journal of Biological Chemistry9 citations Open access
Semantic Scholar
Crystal structure of LysK, an enzyme catalyzing the last step of lysine biosynthesis in Thermus thermophilus, in complex with lysine: Insight into the mechanism for recognition of the amino-group carrier protein, LysW.
S. Fujita, Su-Hee Cho, A. Yoshida, F. Hasebe +3 more
2017Biochemical and Biophysical Research Communications - BBRC8 citations
Semantic Scholar
Multi-phasic bi-directional chemotactic responses of the growth cone
Naoki Honda, M. Nishiyama, Kazunobu Togashi, Yasunobu Igarashi +2 more
2016Scientific Reports8 citations Open access
Semantic Scholar
Structural Basis for the Prenylation Reaction of Carbazole-Containing Natural Products Catalyzed by Squalene Synthase-like Enzymes.
R. Nagata, Hironori Suemune, M. Kobayashi, T. Shinada +6 more
2022Angewandte Chemie7 citations
Semantic Scholar
Immunosuppressive effect of a non-proteinogenic amino acid from Streptomyces through inhibiting allogeneic T cell proliferation
T. Yashiro, Fumiya Sakata, Takahiro Sekimoto, T. Shirai +8 more
2019Bioscience, biotechnology and biochemistry7 citations
Semantic Scholar
Glutamate Dehydrogenase from Thermus thermophilus Is Activated by AMP and Leucine as a Complex with Catalytically Inactive Adenine Phosphoribosyltransferase Homolog
T. Tomita, H. Matsushita, A. Yoshida, Saori Kosono +3 more
2019Journal of Bacteriology7 citations Open access
Semantic Scholar
A novel oxazole-containing tetraene compound, JBIR-159, produced by heterologous expression of the cryptic trans-AT type polyketide synthase biosynthetic gene cluster
T. Hashimoto, J. Hashimoto, N. Kagaya, Takehiro Nishimura +4 more
2021Journal of antibiotics (Tokyo. 1968)6 citations
Semantic Scholar
Characterization of lysine acetylation in the peripheral subunit-binding domain of the E2 subunit of the pyruvate dehydrogenase-2-oxoglutarate dehydrogenase hybrid complex from Corynebacterium glutamicum.
Ayano Komine-Abe, Naoko Kondo, Shosei Kubo, H. Kawasaki +2 more
2020Bioscience, biotechnology and biochemistry6 citations
Semantic Scholar
Biochemical characterization of archaeal homocitrate synthase from Sulfolobus acidocaldarius
Tomohiro Suzuki, Nagisa Akiyama, A. Yoshida, T. Tomita +7 more
2020FEBS Letters6 citations Open access
Semantic Scholar
An Unprecedented Cyclization Mechanism in the Biosynthesis of Carbazole Alkaloids in Streptomyces
M. Kobayashi, T. Tomita, K. Shin-ya, M. Nishiyama +1 more
2019Angewandte Chemie6 citations
Semantic Scholar
Protein acetylation on 2-isopropylmalate synthase from Thermus thermophilus HB27
A. Yoshida, M. Yoshida, T. Kuzuyama, M. Nishiyama +1 more
2019Extremophiles6 citations
Semantic Scholar
Discovery and analysis of a novel type of the serine biosynthetic enzyme phosphoserine phosphatase in Thermus thermophilus
Y. Chiba, A. Yoshida, S. Shimamura, Masafumi Kameya +3 more
2018The FEBS Journal6 citations
Semantic Scholar

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T. Kuzuyama×33
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T. Kuzuyama — researcher profile on SciRah
T. Tomita×19
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T. Tomita — researcher profile on SciRah
A. Yoshida×13
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A. Yoshida — researcher profile on SciRah
K. Shin-ya×12
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K. Shin-ya — researcher profile on SciRah

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Saori Kosono — researcher profile on SciRah

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K. Matsuda — researcher profile on SciRah

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T. Shinada — researcher profile on SciRah

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M. Yoshida — researcher profile on SciRah

Taro Shiraishi×6

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Taro Shiraishi — researcher profile on SciRah

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F. Hasebe — researcher profile on SciRah

Kazuya Teramoto×4

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Kazuya Teramoto — researcher profile on SciRah

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C. Nishiyama — researcher profile on SciRah