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Jennifer G. Abelin · SciRah

Researcher profile · Semantic Scholar

Jennifer G. Abelin

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Jennifer G. Abelin — researcher profile on SciRah

h-index: 22
Works: 68
Citations: 2,368

Most-cited papers

Mass Spectrometry Profiling of HLA-Associated Peptidomes in Mono-allelic Cells Enables More Accurate Epitope Prediction
Jennifer G. Abelin, D. Keskin, Siranush Sarkizova, Christina R. Hartigan +11 more
2017Immunity614 citations Open access
Semantic Scholar
Defining HLA-II Ligand Processing and Binding Rules with Mass Spectrometry Enhances Cancer Epitope Prediction.
Jennifer G. Abelin, D. Harjanto, M. Malloy, Prerna Suri +22 more
2019Immunity211 citations Open access
Semantic Scholar
MHC Class I–Associated Phosphopeptides Are the Targets of Memory-like Immunity in Leukemia
Mark Cobbold, H. De la Peña, Andrew Norris, Joy M. Polefrone +13 more
2013Science Translational Medicine171 citations Open access
Semantic Scholar
Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs
S. Weingarten-Gabbay, Susan Klaeger, Siranush Sarkizova, L. Pearlman +54 more
2021Cell129 citations Open access
Semantic Scholar
Reduced-representation Phosphosignatures Measured by Quantitative Targeted MS Capture Cellular States and Enable Large-scale Comparison of Drug-induced Phenotypes*
Jennifer G. Abelin, Jinal Patel, Xiao-Dong Lu, Caitlin M. Feeney +16 more
2016Molecular & Cellular Proteomics90 citations Open access
Semantic Scholar
What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?
J. Prensner, Jennifer G. Abelin, Leron W. Kok, K. Clauser +6 more
2023Molecular & Cellular Proteomics84 citations Open access
Semantic Scholar
A Library of Phosphoproteomic and Chromatin Signatures for Characterizing Cellular Responses to Drug Perturbations
Lev Litichevskiy, R. Peckner, Jennifer G. Abelin, Jacob K. Asiedu +30 more
2017bioRxiv82 citations Open access
Semantic Scholar
Antigen Discovery and Specification of Immunodominance Hierarchies for MHCII-Restricted Epitopes
D. Graham, C. Luo, Daniel J. O'Connell, A. Lefkovith +9 more
2018Nature Medicine76 citations Open access
Semantic Scholar
Pancreatic cancer-restricted cryptic antigens are targets for T cell recognition
Zackery A Ely, Zachary J Kulstad, Gurcan Gunaydin, Sudarsana Addepalli +24 more
2025Science75 citations Open access
Semantic Scholar
Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics
R. Peckner, S. Myers, A. S. V. Jacome, J. Egertson +4 more
2018Nature Methods75 citations Open access
Semantic Scholar
Complementary IMAC enrichment methods for HLA-associated phosphopeptide identification by mass spectrometry
Jennifer G. Abelin, P. Trantham, S. Penny, Andrea Patterson +6 more
2015Nature Protocols73 citations Open access
Semantic Scholar
The Role of Mass Spectrometry and Proteogenomics in the Advancement of HLA Epitope Prediction
Amanda L. Creech, Y. S. Ting, S. P. Goulding, John F. K. Sauld +4 more
2018Proteomics63 citations Open access
Semantic Scholar
Systematic discovery and validation of T cell targets directed against oncogenic KRAS mutations
Jaewon Choi, S. P. Goulding, Brandon P. Conn, Christopher D. McGann +14 more
2021Cell Reports Methods62 citations Open access
Semantic Scholar
MHC class-I associated phosphopeptides are the targets of memory-like immunity in leukemia
M. Cobbold, H. De la Peña, Andrew J. Norris, Joy M. Polefrone +18 more
2013Science Translational Medicine61 citations Open access
Semantic Scholar
HIF Regulates Multiple Translated Endogenous Retroviruses: Implications for Cancer Immunotherapy
Qin-Qin Jiang, D. Braun, Karl R. Clauser, Vijyendra Ramesh +42 more
2025Cell58 citations Open access
Semantic Scholar
HLA-II immunopeptidome profiling and deep learning reveal features of antigenicity to inform antigen discovery
Martin Stražar, Jihye Park, Jennifer G. Abelin, Hannah B. Taylor +10 more
2023Immunity49 citations Open access
Semantic Scholar
Optimized Liquid and Gas Phase Fractionation Increases HLA-Peptidome Coverage for Primary Cell and Tissue Samples
Susan Klaeger, Annie Apffel, K. Clauser, Siranush Sarkizova +13 more
2021Molecular & Cellular Proteomics49 citations Open access
Semantic Scholar
Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues
Jennifer G. Abelin, Erik J. Bergstrom, Keith D. Rivera, Hannah B. Taylor +19 more
2023Nature Communications47 citations Open access
Semantic Scholar
Sensitive, High-Throughput HLA-I and HLA-II Immunopeptidomics Using Parallel Accumulation-Serial Fragmentation Mass Spectrometry
K. Phulphagar, C. Ctortecka, A. S. V. Jacome, Susan Klaeger +6 more
2023Molecular & Cellular Proteomics34 citations Open access
Semantic Scholar
Expanding the human proteome with microproteins and peptideins
Eric W. Deutsch, Leron W. Kok, Jonathan M. Mudge, Cristian F. Valls +60 more
2026Nature29 citations Open access
Semantic Scholar
High-quality peptide evidence for annotating non-canonical open reading frames as human proteins
Eric W. Deutsch, Leron W. Kok, Jonathan M. Mudge, Jorge Ruiz-Orera +39 more
2024bioRxiv28 citations Open access
Semantic Scholar
Targeting the aminopeptidase ERAP enhances antitumor immunity by disrupting the NKG2A-HLA-E inhibitory checkpoint.
Hsiao-Wei Tsao, Seth Anderson, Kenneth J. Finn, Jonathan J. Perera +42 more
2024Immunity24 citations Open access
Semantic Scholar
MS-Based HLA-II Peptidomics Combined With Multiomics Will Aid the Development of Future Immunotherapies
Hannah B. Taylor, Susan Klaeger, K. Clauser, Siranush Sarkizova +4 more
2021Molecular & Cellular Proteomics22 citations Open access
Semantic Scholar
SARS-CoV-2 infected cells present HLA-I peptides from canonical and out-of-frame ORFs
S. Weingarten-Gabbay, Susan Klaeger, Siranush Sarkizova, L. Pearlman +17 more
2020bioRxiv20 citations Open access
Semantic Scholar
Tumor Infiltrating Lymphocytes Target HLA-I Phosphopeptides Derived From Cancer Signaling in Colorectal Cancer
S. Penny, Jennifer G. Abelin, S. Malaker, Paisley T. Myers +7 more
2021Frontiers in Immunology18 citations Open access
Semantic Scholar
31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016): part two
C. Ager, M. Reilley, C. Nicholas, Todd Bartkowiak +496 more
2016Journal for ImmunoTherapy of Cancer18 citations Open access
Semantic Scholar
The HLA-II immunopeptidome of SARS-CoV-2
S. Weingarten-Gabbay, Da-Yuan Chen, Siranush Sarkizova, Hannah B. Taylor +11 more
2023bioRxiv17 citations Open access
Semantic Scholar
Defining HLA-II ligand processing and binding rules with mass spectrometry enhances cancer epitope prediction.
Jennifer G. Abelin, D. Harjanto, M. Malloy, Prerna Suri +22 more
2021Immunity17 citations Open access
Semantic Scholar
Systematic identification of minor histocompatibility antigens predicts outcomes of allogeneic hematopoietic cell transplantation
N. Cieri, Nidhi Hookeri, Kari Stromhaug, Liang Li +33 more
2024Nature Biotechnology15 citations Open access
Semantic Scholar
MONTE enables serial immunopeptidome, ubiquitylome, proteome, phosphoproteome, acetylome analyses of sample-limited tissues
Jennifer G. Abelin, Erik J. Bergstrom, Hannah B. Taylor, Keith D. Rivera +12 more
2021bioRxiv11 citations Open access
Semantic Scholar
Identification of Post-translationally Modified MHC Class I–Associated Peptides as Potential Cancer Immunotherapeutic Targets
Keira E. Mahoney, Larry Reser, Maria Virginia Ruiz Cuevas, Jennifer G. Abelin +3 more
2025Molecular & Cellular Proteomics9 citations
Semantic Scholar
Sensitive, high-throughput HLA-I and HLA-II immunopeptidomics using parallel accumulation-serial fragmentation mass spectrometry
K. Phulphagar, C. Ctortecka, Alvaro Sebastian Vaca Jacome, Susan Klaeger +6 more
2023bioRxiv8 citations Open access
Semantic Scholar
Specter: linear deconvolution as a new paradigm for targeted analysis of data-independent acquisition mass spectrometry proteomics
R. Peckner, S. Myers, J. Egertson, Richard S. Johnson +4 more
2017bioRxiv8 citations Open access
Semantic Scholar
Innovations Toward Immunopeptidomics
Jennifer G. Abelin, Andrea L. Cox
2024Molecular & Cellular Proteomics7 citations Open access
Semantic Scholar
Tertiary lymphoid structures harbour stem-like tumour-specific T cells
Alexander B. Afeyan, Adi Nagler, Chloe R. Tu, Gabriel Roberti De Oliveira +24 more
2026Nature5 citations
Semantic Scholar
Pan-viral ORFs discovery using Massively Parallel Ribosome Profiling
S. Weingarten-Gabbay, M. Bauer, Alexandra C. Stanton, Susan Klaeger +7 more
2023bioRxiv4 citations Open access
Semantic Scholar
What can Ribo-seq and proteomics tell us about the non-canonical proteome?
J. Prensner, Jennifer G. Abelin, Leron W. Kok, K. Clauser +5 more
2023bioRxiv4 citations Open access
Semantic Scholar
HLA-I immunopeptidome profiling of human cells infected with high-containment enveloped viruses
S. Weingarten-Gabbay, L. Pearlman, Da-Yuan Chen, Susan Klaeger +7 more
2022STAR Protocols3 citations Open access
Semantic Scholar
Latent effector T cells mediate immunotherapy responses in the bone marrow microenvironment.
N. Kehl, T. Wagner, Simon Steiger, T. Boschert +49 more
2026Cancer Cell2 citations Open access
Semantic Scholar
Sensitive detection of cancer antigens enabled by user-defined peptide libraries.
Kasidet Manakongtreecheep, C. Ctortecka, Luis O Correa-Medero, T. Zhu +21 more
2026Nature Biotechnology2 citations
Semantic Scholar
Conserved programs and specificities of T cells targeting hematological malignancies
T. Wagner, N. Kehl, Simon Steiger, T. Boschert +40 more
2025bioRxiv2 citations
Semantic Scholar
Pan-viral ORFs discovery using Massively Parallel Ribosome Profiling
S. Weingarten-Gabbay, M. Bauer, Alexandra C. Stanton, Ying-Pu Yu +12 more
2025Science1 citations Open access
Semantic Scholar
1408 Non-canonical peptide sources broaden the landscape of targetable antigens in pancreatic cancer
Zackery A Ely, Zachary J Kulstad, Jennifer G. Abelin, Eva K. Verzani +13 more
2023Regular and Young Investigator Award Abstracts1 citations Open access
Semantic Scholar
Optimized liquid and gas phase fractionation increase HLA-peptidome coverage for primary cell and tissue samples
Susan Klaeger, Annie Apffel, K. Clauser, Siranush Sarkizova +13 more
2021bioRxiv1 citations Open access
Semantic Scholar
Peptide-HLA II interaction prediction for post-translationally modified peptides
A. Dumitrescu, Dani Korpela, Adrian Bebenek, Anna Ju +7 more
2026bioRxiv0 citations Open access
Semantic Scholar
Discovery of CD4+ T cell–recognized B. pertussis antigens that reduce airway colonization
Mohamed M. Shamseldin, Jesse M. Hall, Griffin M. Lawrence, Gabrielle M. Hernandez +7 more
2026JCI Insight0 citations Open access
Semantic Scholar
Abstract PR001: Exploiting HIF-driven endogenous retroviral neoantigens to advance kidney cancer immunotherapy
Qin-Qin Jiang, David A. Braun, K. Clauser, Vijyendra Ramesh +46 more
2026Cancer Research0 citations
Semantic Scholar
Mapping the functional dark proteome in cancer.
John R. Prensner, William A. Freed-Pastor, Jennifer G. Abelin, Catherine J. Wu +6 more
2026Nature Reviews. Cancer0 citations
Semantic Scholar
Special Issue: Celebrating the Career of Donald F. Hunt
Jeffrey Shabanowitz, Jennifer G. Abelin
2025Molecular & Cellular Proteomics0 citations Open access
Semantic Scholar
119 Endogenous retroviruses as tumor-specific antigens in clear cell renal cell carcinoma: A new avenue for immunotherapy
Qin-Qin Jiang, David A Braun, Karl R. Clauser, Vijyendra Ramesh +44 more
2025Regular and Young Investigator Award Abstracts0 citations Open access
Semantic Scholar

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