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S. Shu · SciRah

Researcher profile · Semantic Scholar

S. Shu

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S. Shu — researcher profile on SciRah

h-index: 48
Works: 119
Citations: 26K

Most-cited papers

Phytozome: a comparative platform for green plant genomics
D. Goodstein, S. Shu, R. Howson, R. Neupane +7 more
2011Nucleic Acids Res.4,965 citations Open access
Semantic Scholar
Genome sequence of the palaeopolyploid soybean
J. Schmutz, S. Cannon, J. Schlueter, Jian-Xin Ma +41 more
2010Nature4,188 citations Open access
Semantic Scholar
AmiGO: online access to ontology and annotation data
S. Carbon, A. Ireland, Christopher J. Mungall, S. Shu +2 more
2008Bioinform.1,916 citations Open access
Semantic Scholar
A reference genome for common bean and genome-wide analysis of dual domestications
J. Schmutz, P. McClean, S. Mamidi, G. A. Wu +37 more
2014Nature Genetics1,214 citations Open access
Semantic Scholar
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
I. Verde, A. Abbott, S. Scalabrin, Sook Jung +49 more
2013Nature Genetics1,066 citations Open access
Semantic Scholar
Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.
J. Bowman, T. Kohchi, K. Yamato, J. Jenkins +109 more
2017Cell1,050 citations Open access
Semantic Scholar
The Amphimedon queenslandica genome and the evolution of animal complexity
M. Srivastava, O. Simakov, J. Chapman, B. Fahey +29 more
2010Nature1,032 citations Open access
Semantic Scholar
The Genome of the Western Clawed Frog Xenopus tropicalis
U. Hellsten, R. Harland, Michael J. Gilchrist, D. Hendrix +44 more
2010Science831 citations Open access
Semantic Scholar
The Sorghum bicolor reference genome: improved assembly and annotations, a transcriptome atlas, and signatures of genome organization
Ryan F. McCormick, S. Truong, A. Sreedasyam, J. Jenkins +11 more
2017bioRxiv529 citations Open access
Semantic Scholar
The genome of Naegleria gruberi illuminates early eukaryotic versatility.
L. Fritz-Laylin, S. Prochnik, M. Ginger, J. Dacks +20 more
2010Cell465 citations Open access
Semantic Scholar
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
T. Slotte, Khaled M. Hazzouri, J. Ågren, Daniel Koenig +32 more
2013Nature Genetics426 citations Open access
Semantic Scholar
The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.
Daniel Lang, K. Ullrich, F. Murat, J. Fuchs +52 more
2018The Plant Journal393 citations Open access
Semantic Scholar
Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement
Z. J. Chen, A. Sreedasyam, Atsumi Ando, Q. Song +29 more
2020Nature Genetics362 citations Open access
Semantic Scholar
The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
I. Verde, J. Jenkins, L. Dondini, S. Micali +13 more
2017BMC Genomics350 citations Open access
Semantic Scholar
The genome of cowpea (Vigna unguiculata [L.] Walp.)
S. Lonardi, M. Muñoz-Amatriaín, Qihua Liang, S. Shu +19 more
2019bioRxiv320 citations Open access
Semantic Scholar
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure
Sean P. Gordon, B. Contreras-Moreira, D. P. Woods, D. D. Des Marais +23 more
2017Nature Communications291 citations Open access
Semantic Scholar
Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)
S. Brawley, N. Blouin, E. Ficko-Blean, G. Wheeler +46 more
2017Proceedings of the National Academy of Sciences of the United States of America259 citations Open access
Semantic Scholar
The Reference Genome of the Halophytic Plant Eutrema salsugineum
Ruolin Yang, D. Jarvis, Hao Chen, M. Beilstein +11 more
2013Frontiers in Plant Science238 citations Open access
Semantic Scholar
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass
J. Lovell, Alice H. MacQueen, S. Mamidi, J. Bonnette +62 more
2021Nature216 citations Open access
Semantic Scholar
The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
C. Smith, S. Shu, C. Mungall, G. Karpen
2007Science206 citations Open access
Semantic Scholar
Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing
U. Hellsten, K. Wright, J. Jenkins, S. Shu +5 more
2013Proceedings of the National Academy of Sciences of the United States of America205 citations Open access
Semantic Scholar
Construction and comparison of three reference-quality genome assemblies for soybean.
B. Valliyodan, S. Cannon, P. Bayer, S. Shu +26 more
2019The Plant Journal170 citations Open access
Semantic Scholar
The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism
Xiao-Han Yang, Rong-Bin Hu, Heng-Fu Yin, J. Jenkins +45 more
2017Nature Communications166 citations Open access
Semantic Scholar
Dynamic genome evolution in a model fern
D. Marchant, Guang Chen, S. Cai, Fei Chen +46 more
2022Nature Plants154 citations Open access
Semantic Scholar
A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci
S. Mamidi, A. Healey, Pu Huang, J. Grimwood +19 more
2020Nature Biotechnology149 citations Open access
Semantic Scholar
The genomic landscape of molecular responses to natural drought stress in Panicum hallii
J. Lovell, J. Jenkins, D. Lowry, S. Mamidi +23 more
2018Nature Communications118 citations Open access
Semantic Scholar
The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history
D. Filiault, E. S. Ballerini, T. Mandáková, Gökçe Aköz +16 more
2018eLife115 citations Open access
Semantic Scholar
Genome biology of the paleotetraploid perennial biomass crop Miscanthus
T. Mitros, Adam M. Session, Brandon T James, G. Wu +38 more
2020Nature Communications109 citations Open access
Semantic Scholar
A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
Brigitte T. Hofmeister, Johanna Denkena, M. Colomé-Tatché, Yadollah Shahryary +21 more
2019bioRxiv105 citations Open access
Semantic Scholar
A willow sex chromosome reveals convergent evolution of complex palindromic repeats
R. Zhou, D. Macaya-Sanz, Craig H. Carlson, J. Schmutz +12 more
2019Genome Biology103 citations Open access
Semantic Scholar
The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory
Rory J. Craig, S. Gallaher, S. Shu, P. Salomé +14 more
2022bioRxiv102 citations Open access
Semantic Scholar
A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
Ze Peng, J. Bredeson, G. Wu, S. Shu +8 more
2020The Plant Journal101 citations Open access
Semantic Scholar
A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
Elizabeth A. Cooper, Z. Brenton, B. Flinn, J. Jenkins +13 more
2019BMC Genomics97 citations Open access
Semantic Scholar
Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
J. Lovell, Nolan Bentley, Gaurab Bhattarai, J. Jenkins +31 more
2021Nature Communications96 citations Open access
Semantic Scholar
Genome sequence and evolution of Betula platyphylla
Su Chen, Yu-Cheng Wang, Lili Yu, Tao Zheng +29 more
2021Horticulture Research85 citations Open access
Semantic Scholar
Gene-rich UV sex chromosomes harbor conserved regulators of sexual development
Sarah B. Carey, J. Jenkins, J. Lovell, F. Maumus +25 more
2021Science Advances85 citations Open access
Semantic Scholar
Genome sequence of the model rice variety KitaakeX
Rashmi Jain, J. Jenkins, S. Shu, M. Chern +19 more
2019BMC Genomics84 citations Open access
Semantic Scholar
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors
Sean P. Gordon, B. Contreras-Moreira, Joshua J. Levy, Armin Djamei +29 more
2020Nature Communications82 citations Open access
Semantic Scholar
Chromosome evolution and the genetic basis of agronomically important traits in greater yam
J. Bredeson, J. Lyons, Ibukun O. Oniyinde, N. Okereke +29 more
2021Nature Communications80 citations Open access
Semantic Scholar
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics
A. Healey, Bryan T. Piatkowski, J. Lovell, A. Sreedasyam +25 more
2023Nature Plants76 citations Open access
Semantic Scholar
A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.)
J. McGrath, Andrew Funk, Paul J. Galewski, Shujun Ou +25 more
2020bioRxiv71 citations Open access
Semantic Scholar
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
A. Sreedasyam, C. Plott, M. Hossain, J. Lovell +60 more
2023Nucleic Acids Research62 citations Open access
Semantic Scholar
Genome sequence of the palaeopolyploid soybean
J. Schmutz, S. Cannon, J. Schlueter, Jian-Xin Ma +41 more
2010Nature44 citations Open access
Semantic Scholar
Unlocking saponin biosynthesis in soapwort
Seohyun Jo, Amr El-Demerdash, C. Owen, Vikas Srivastava +17 more
2024Nature Chemical Biology38 citations Open access
Semantic Scholar
A view of the pan‐genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.)
Qihua Liang, M. Muñoz-Amatriaín, S. Shu, Sassoum Lo +13 more
2023The Plant Genome38 citations Open access
Semantic Scholar
Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA
W. Bewg, S. Harding, N. Engle, B. Vaidya +13 more
2022Plant Physiology38 citations Open access
Semantic Scholar
The western redcedar genome reveals low genetic diversity in a self-compatible conifer
Tal J. Shalev, Omnia Gamal El-Dien, M. Yuen, S. Shu +23 more
2022bioRxiv37 citations Open access
Semantic Scholar
Genome resources for three modern cotton lines guide future breeding efforts
A. Sreedasyam, J. Lovell, S. Mamidi, Sameer Khanal +29 more
2024Nature Plants35 citations Open access
Semantic Scholar
Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean
M. J. C. Espina, J. Lovell, J. Jenkins, S. Shu +13 more
2024bioRxiv34 citations Open access
Semantic Scholar
Haplotype-resolved genome assembly of Populus tremula × P. alba reveals aspen-specific megabase satellite DNA.
Ran Zhou, J. Jenkins, Yibing Zeng, S. Shu +14 more
2023The Plant Journal33 citations Open access
Semantic Scholar

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