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Matthew E. Hudson · SciRah

Researcher profile · Semantic Scholar

Matthew E. Hudson

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Matthew E. Hudson — researcher profile on SciRah

h-index: 44
Works: 105
Citations: 7,568

Most-cited papers

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.
Ji-Sen Zhang, Xing-Tan Zhang, Hai-Bao Tang, Qing Zhang +104 more
2018Nature Genetics589 citations Open access
Semantic Scholar
Copy Number Variation of Multiple Genes at Rhg1 Mediates Nematode Resistance in Soybean
D. Cook, Tong-Ge-On Lee, Xiao-Li Guo, S. Melito +10 more
2012Science579 citations
Semantic Scholar
Genomic signatures of evolutionary transitions from solitary to group living
K. Kapheim, Hai-Lin Pan, Cai Li, S. Salzberg +48 more
2015Science410 citations Open access
Semantic Scholar
The genomes of two key bumblebee species with primitive eusocial organization
B. Sadd, S. Barribeau, G. Bloch, D. D. de Graaf +140 more
2015Genome Biology386 citations Open access
Semantic Scholar
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.)
R. Ming, R. VanBuren, Yan-Ling Liu, Mei Yang +67 more
2013Genome Biology380 citations Open access
Semantic Scholar
Wasp Gene Expression Supports an Evolutionary Link Between Maternal Behavior and Eusociality
A. Toth, Kranthi Varala, T. C. Newman, F. Miguez +7 more
2007Science312 citations
Semantic Scholar
Mechanical Stress Induces Biotic and Abiotic Stress Responses via a Novel cis-Element
J. Walley, S. Coughlan, Matthew E. Hudson, Michael F. Covington +4 more
2007PLoS Genetics283 citations Open access
Semantic Scholar
Sentieon DNASeq Variant Calling Workflow Demonstrates Strong Computational Performance and Accuracy
Katherine I Kendig, S. Baheti, M. Bockol, T. Drucker +13 more
2019Frontiers in Genetics238 citations Open access
Semantic Scholar
Genes involved in convergent evolution of eusociality in bees
S. H. Woodard, B. Fischman, A. Venkat, Matthew E. Hudson +4 more
2011Proceedings of the National Academy of Sciences of the United States of America222 citations Open access
Semantic Scholar
Expression Pro®ling of Phyb Mutant Demonstrates Substantial Contribution of Other Phytochromes to Red-light-regulated Gene Expression during Seedling De-etiolation
J. Tepperman, Matthew E. Hudson, R. Khanna, Tong Zhu +3 more
2004218 citations
Semantic Scholar
Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes
Jian-Ping Wang, B. Roe, S. Macmil, Qing-Yi Yu +12 more
2010BMC Genomics177 citations Open access
Semantic Scholar
Repeat associated small RNAs vary among parents and following hybridization in maize
Wesley T. Barber, Wei Zhang, H. Win, Kranthi Varala +3 more
2012Proceedings of the National Academy of Sciences of the United States of America158 citations Open access
Semantic Scholar
From association to prediction: statistical methods for the dissection and selection of complex traits in plants.
A. Lipka, Catherine B. Kandianis, Matthew E. Hudson, Jian-Ming Yu +3 more
2015Current opinion in plant biology129 citations
Semantic Scholar
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
M. Podar, I. Anderson, K. Makarova, J. Elkins +23 more
2008Genome Biology121 citations Open access
Semantic Scholar
Endogenous, Tissue-Specific Short Interfering RNAs Silence the Chalcone Synthase Gene Family in Glycine max Seed Coats[W][OA]
Jigyasa H. Tuteja, G. Zabala, Kranthi Varala, Matthew E. Hudson +1 more
2009The Plant Cell Online119 citations Open access
Semantic Scholar
Genome biology of the paleotetraploid perennial biomass crop Miscanthus
T. Mitros, Adam M. Session, Brandon T James, G. Wu +38 more
2020Nature Communications109 citations Open access
Semantic Scholar
associated with behaviour across social insect lineages Brain transcriptomic analysis in paper wasps identifies genes
A. Toth, Kranthi Varala, M. Henshaw, S. Rodriguez-Zas +2 more
2010103 citations
Semantic Scholar
Genomic and small RNA sequencing of Miscanthus × giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses
K. Swaminathan, Magdy S. Alabady, Kranthi Varala, E. De Paoli +8 more
2010Genome Biology101 citations Open access
Semantic Scholar
Finding the missing honey bee genes: lessons learned from a genome upgrade
C. Elsik, K. Worley, A. Bennett, M. Beye +44 more
2014BMC Genomics99 citations Open access
Semantic Scholar
Sympatric ecological speciation meets pyrosequencing: sampling the transcriptome of the apple maggot Rhagoletis pomonella
D. Schwarz, H. M. Robertson, J. Feder, Kranthi Varala +4 more
2009BMC Genomics98 citations Open access
Semantic Scholar
Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey
K. Swaminathan, Kranthi Varala, Matthew E. Hudson
2007BMC Genomics98 citations Open access
Semantic Scholar
Fine mapping the soybean aphid resistance gene Rag1 in soybean
Ki-Seung Kim, Stephanie P. Bellendir, K. Hudson, C. B. Hill +4 more
2010Theoretical and Applied Genetics97 citations Open access
Semantic Scholar
A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy
K. Swaminathan, W. Chae, T. Mitros, Kranthi Varala +10 more
2012BMC Genomics96 citations Open access
Semantic Scholar
Fine mapping of the soybean aphid-resistance gene Rag2 in soybean PI 200538
Ki-Seung Kim, C. B. Hill, G. Hartman, D. Hyten +2 more
2010Theoretical and Applied Genetics89 citations Open access
Semantic Scholar
Simulating Next-Generation Sequencing Datasets from Empirical Mutation and Sequencing Models
Z. Stephens, Matthew E. Hudson, L. Mainzer, Morgan L. Taschuk +2 more
2016PLoS ONE85 citations Open access
Semantic Scholar
Evolution and selection of Rhg1, a copy-number variant nematode-resistance locus
Tong-Ge-On Lee, Indrajit Kumar, B. Diers, Matthew E. Hudson
2015Molecular Ecology81 citations Open access
Semantic Scholar
Cytochrome P450 Monooxygenases as Reporters for Circadian-Regulated Pathways1[C][W][OA]
Ying-Hong Pan, T. Michael, Matthew E. Hudson, S. Kay +2 more
2009Plant Physiology76 citations Open access
Semantic Scholar
A Fluorescence in Situ Hybridization System for Karyotyping Soybean
S. Findley, Steven Cannon, Kranthi Varala, Jian-Chang Du +4 more
2010Genetics74 citations Open access
Semantic Scholar
Residues Clustered in the Light-Sensing Knot of Phytochrome B are Necessary for Conformer-Specific Binding to Signaling Partner PIF3
Elise A. Kikis, Yoshito Oka, Matthew E. Hudson, A. Nagatani +1 more
2009PLoS Genetics71 citations Open access
Semantic Scholar
The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes
Rick E. Masonbrink, T. Maier, Usha Muppirala, Arun S. Seetharam +11 more
2018BMC Genomics70 citations Open access
Semantic Scholar
A comparison of genotyping-by-sequencing analysis methods on low-coverage crop datasets shows advantages of a new workflow, GB-eaSy
D. Wickland, Gopal Battu, K. Hudson, B. Diers +1 more
2017BMC Bioinformatics68 citations Open access
Semantic Scholar
Intronic Non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees
P. Cingolani, Xiao-Yi Cao, Radhika S. Khetani, Chieh-Chun Chen +10 more
2013BMC Genomics65 citations Open access
Semantic Scholar
Contribution of transcriptional regulation to natural variations in Arabidopsis
W. Chen, Sherman H. Chang, Matthew E. Hudson, Wai-King Kwan +5 more
2005Genome Biology63 citations Open access
Semantic Scholar
Recommendations for performance optimizations when using GATK3.8 and GATK4
Jacob R Heldenbrand, S. Baheti, M. Bockol, T. Drucker +11 more
2019BMC Bioinformatics59 citations Open access
Semantic Scholar
Bacterial steroid-17,20-desmolase is a taxonomically rare enzymatic pathway that converts prednisone to 1,4-androstanediene-3,11,17-trione, a metabolite that causes proliferation of prostate cancer cells
Lindsey K. Ly, J. Rowles, Hans Müller Paul, J. M. Alves +7 more
2019Journal of Steroid Biochemistry and Molecular Biology58 citations Open access
Semantic Scholar
A Classification of Basic Helix-Loop-Helix Transcription Factors of Soybean
K. Hudson, Matthew E. Hudson
2015International Journal of Genomics57 citations Open access
Semantic Scholar
The Inheritance Pattern of 24 nt siRNA Clusters in Arabidopsis Hybrids Is Influenced by Proximity to Transposable Elements
Y. Li, Kranthi Varala, S. Moose, Matthew E. Hudson
2012PLoS ONE54 citations Open access
Semantic Scholar
A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee
A. Avalos, Hai-Lin Pan, Cai Li, Jenny P. Acevedo-Gonzalez +7 more
2017Nature Communications53 citations Open access
Semantic Scholar
Identification of Multiple Phytotoxins Produced by Fusarium virguliforme Including a Phytotoxic Effector (FvNIS1) Associated With Sudden Death Syndrome Foliar Symptoms.
Hao-Xun Chang, L. Domier, O. Radwan, Craig R. Yendrek +2 more
2016Molecular Plant-Microbe Interactions53 citations Open access
Semantic Scholar
Genome-wide association mapping of resistance to a Brazilian isolate of Sclerotinia sclerotiorum in soybean genotypes mostly from Brazil
Wei Wei, Ana Carolina Oliveira Mesquita, Adriana de A. Figueiró, Xing Wu +5 more
2017BMC Genomics47 citations Open access
Semantic Scholar
Genomic regions influencing aggressive behavior in honey bees are defined by colony allele frequencies
A. Avalos, Miaoquan Fang, Hai-Lin Pan, Aixa Ramirez Lluch +6 more
2020Proceedings of the National Academy of Sciences of the United States of America45 citations Open access
Semantic Scholar
Design considerations for workflow management systems use in production genomics research and the clinic
Azza E. Ahmed, Joshua M. Allen, Tajesvi Bhat, P. Burra +16 more
2021Scientific Reports44 citations Open access
Semantic Scholar
Analysis of a horizontally transferred pathway involved in vitamin B6 biosynthesis from the soybean cyst nematode Heterodera glycines.
James P. Craig, S. Bekal, Matthew E. Hudson, L. Domier +2 more
2008Molecular biology and evolution44 citations Open access
Semantic Scholar
An efficient method for measuring copy number variation applied to improvement of nematode resistance in soybean.
Tong-Ge-On Lee, B. Diers, Matthew E. Hudson
2016The Plant Journal40 citations Open access
Semantic Scholar
t-SNAREs Bind the Rhg1 α-SNAP and Mediate Soybean Cyst Nematode Resistance.
Jia Dong, R. Zielinski, Matthew E. Hudson
2020The Plant Journal38 citations Open access
Semantic Scholar
Impact of Rhg1 copy number, type, and interaction with Rhg4 on resistance to Heterodera glycines in soybean
Neil Yu, Tong-Ge-On Lee, D. P. Rosa, Matthew E. Hudson +1 more
2016Theoretical and Applied Genetics37 citations
Semantic Scholar
Human cell toxicogenomic analysis of bromoacetic acid: A regulated drinking water disinfection by‐product
M. Muellner, Matias S. Attene-Ramos, Matthew E. Hudson, E. Wagner +1 more
2009Environmental and Molecular Mutagenesis37 citations
Semantic Scholar
WI12 Rhg1 interacts with DELLAs and mediates soybean cyst nematode resistance through hormone pathways
Jia Dong, Matthew E. Hudson
2021Plant Biotechnology Journal35 citations Open access
Semantic Scholar
Evolutionary divergence of phytochrome protein function in Zea mays PIF3 signaling
Indrajit Kumar, K. Swaminathan, K. Hudson, Matthew E. Hudson
2016Journal of Experimental Botany33 citations Open access
Semantic Scholar
mBLAST: Keeping up with the sequencing explosion for (meta)genome analysis
Curtis Davis, K. Kota, Venkat Baldhandapani, Wei Gong +8 more
2013Journal of Data Mining in Genomics & Proteomics31 citations Open access
Semantic Scholar

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