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J. Elkins · SciRah

Researcher profile · Semantic Scholar

J. Elkins

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J. Elkins — researcher profile on SciRah

h-index: 27
Works: 67
Citations: 3,278

Most-cited papers

Quorum sensing in Pseudomonas aeruginosa controls expression of catalase and superoxide dismutase genes and mediates biofilm susceptibility to hydrogen peroxide
D. Hassett, J. F. Ma, J. Elkins, T. McDermott +9 more
1999Molecular Microbiology436 citations Open access
Semantic Scholar
Cultivating the uncultured
K. Zengler, G. Toledo, M. Rappé, J. Elkins +3 more
2002Proceedings of the National Academy of Sciences of the United States of America305 citations Open access
Semantic Scholar
A korarchaeal genome reveals insights into the evolution of the Archaea
J. Elkins, M. Podar, D. Graham, K. Makarova +16 more
2008Proceedings of the National Academy of Sciences of the United States of America302 citations Open access
Semantic Scholar
Protective Role of Catalase in Pseudomonas aeruginosa Biofilm Resistance to Hydrogen Peroxide
J. Elkins, D. Hassett, P. S. Stewart, H. Schweizer +1 more
1999Applied and Environmental Microbiology262 citations Open access
Semantic Scholar
Effect of Catalase on Hydrogen Peroxide Penetration into Pseudomonas aeruginosa Biofilms
P. S. Stewart, F. Roe, J. Rayner, J. Elkins +3 more
2000Applied and Environmental Microbiology192 citations Open access
Semantic Scholar
Metabolic engineering of Caldicellulosiruptor bescii yields increased hydrogen production from lignocellulosic biomass
Minseok Cha, D. Chung, J. Elkins, A. Guss +1 more
2013Biotechnology for Biofuels136 citations Open access
Semantic Scholar
The in vivo structure of biological membranes and evidence for lipid domains
J. Nickels, S. Chatterjee, C. Stanley, S. Qian +5 more
2017PLoS Biology131 citations Open access
Semantic Scholar
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
M. Podar, I. Anderson, K. Makarova, J. Elkins +23 more
2008Genome Biology121 citations Open access
Semantic Scholar
Engineered microbial systems for enhanced conversion of lignocellulosic biomass.
J. Elkins, Babu Raman, M. Keller
2010Current Opinion in Biotechnology107 citations
Semantic Scholar
Caldicellulosiruptor Core and Pangenomes Reveal Determinants for Noncellulosomal Thermophilic Deconstruction of Plant Biomass
Sara E. Blumer-Schuette, R. Giannone, J. Zurawski, Inci Ozdemir +14 more
2012Journal of Bacteriology103 citations Open access
Semantic Scholar
Caldicellulosiruptor obsidiansis sp. nov., an Anaerobic, Extremely Thermophilic, Cellulolytic Bacterium Isolated from Obsidian Pool, Yellowstone National Park
Scott D. Hamilton-Brehm, J. Mosher, T. Vishnivetskaya, M. Podar +5 more
2009Applied and Environmental Microbiology96 citations Open access
Semantic Scholar
fSpatial and temporal dynamics of cellulose degradation and biofilm formation by Caldicellulosiruptor obsidiansis and Clostridium thermocellum
Zhi-Wu Wang, Seung-Hwan Lee, J. Elkins, J. Morrell-Falvey
2011AMB Express81 citations Open access
Semantic Scholar
Pseudomonas aeruginosa biofilm sensitivity to biocides: use of hydrogen peroxide as model antimicrobial agent for examining resistance mechanisms.
D. Hassett, J. Elkins, J. F. Ma, T. McDermott
1999Methods in Enzymology65 citations Open access
Semantic Scholar
Cellulosic ethanol production via consolidated bioprocessing at 75 °C by engineered Caldicellulosiruptor bescii
D. Chung, Minseok Cha, Elise N. Snyder, J. Elkins +2 more
2015Biotechnology for Biofuels62 citations Open access
Semantic Scholar
Construction and Optimization of a Heterologous Pathway for Protocatechuate Catabolism in Escherichia coli Enables Bioconversion of Model Aromatic Compounds
S. Clarkson, R. Giannone, D. Kridelbaugh, J. Elkins +2 more
2017Applied and Environmental Microbiology50 citations Open access
Semantic Scholar
Bacillus subtilis Lipid Extract, A Branched-Chain Fatty Acid Model Membrane.
J. Nickels, S. Chatterjee, Barmak Mostofian, C. Stanley +8 more
2017Journal of Physical Chemistry Letters48 citations Open access
Semantic Scholar
Thermodesulfobacterium geofontis sp. nov., a hyperthermophilic, sulfate-reducing bacterium isolated from Obsidian Pool, Yellowstone National Park
Scott D. Hamilton-Brehm, R. Gibson, S. Green, E. Hopmans +5 more
2013Extremophiles46 citations
Semantic Scholar
Orthologs of the small RPB8 subunit of the eukaryotic RNA polymerases are conserved in hyperthermophilic Crenarchaeota and "Korarchaeota"
E. Koonin, K. Makarova, J. Elkins
2007Biology Direct45 citations Open access
Semantic Scholar
Complete Genome Sequence of the Cellulolytic Thermophile Caldicellulosiruptor obsidiansis OB47T
J. Elkins, A. Lochner, Scott D. Hamilton-Brehm, K. Davenport +16 more
2010Journal of Bacteriology42 citations Open access
Semantic Scholar
Factors Affecting Catalase Expression in Pseudomonas aeruginosa Biofilms and Planktonic Cells
J. Frederick, J. Elkins, N. Bollinger, D. Hassett +1 more
2001Applied and Environmental Microbiology41 citations Open access
Semantic Scholar
Expression and regulation of phosphate stress inducible genes in Sinorhizobium meliloti.
M. L. Summers, J. Elkins, B. Elliott, T. McDermott
1998Molecular Plant-Microbe Interactions41 citations
Semantic Scholar
Regulation of the Phosphate Stress Response in Rhizobium meliloti by PhoB
Thamir S. Al-Niemi, M. L. Summers, J. Elkins, Michael L. Kahn +1 more
1997Applied and Environmental Microbiology41 citations Open access
Semantic Scholar
Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses
Laura L. Lee, Sara E. Blumer-Schuette, J. Izquierdo, J. Zurawski +11 more
2018Applied and Environmental Microbiology39 citations Open access
Semantic Scholar
Insights into the Evolution of Host Association through the Isolation and Characterization of a Novel Human Periodontal Pathobiont, Desulfobulbus oralis
K. L. Cross, Payal Chirania, Weili Xiong, C. J. Beall +11 more
2018mBio36 citations Open access
Semantic Scholar
Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum
T. Verbeke, R. Giannone, D. Klingeman, N. Engle +6 more
2017Scientific Reports33 citations Open access
Semantic Scholar
Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Xiao-Yu Liang, J. Whitham, E. Holwerda, Xiongjun Shao +11 more
2018Biotechnology for Biofuels31 citations Open access
Semantic Scholar
Corrigendum: Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum
T. Verbeke, R. Giannone, D. Klingeman, N. Engle +6 more
2017Scientific Reports30 citations Open access
Semantic Scholar
Manufacturing demonstration of microbially mediated zinc sulfide nanoparticles in pilot-plant scale reactors
J. Moon, T. Phelps, Curtis L. Fitzgerald, R. Lind +8 more
2016Applied Microbiology and Biotechnology28 citations
Semantic Scholar
Expression of a heat-stable NADPH-dependent alcohol dehydrogenase in Caldicellulosiruptor bescii results in furan aldehyde detoxification
D. Chung, T. Verbeke, K. L. Cross, J. Westpheling +1 more
2015Biotechnology for Biofuels24 citations Open access
Semantic Scholar
Expression of a heat-stable NADPH-dependent alcohol dehydrogenase from Thermoanaerobacter pseudethanolicus 39E in Clostridium thermocellum 1313 results in increased hydroxymethylfurfural resistance
Sun-ki Kim, Joseph D. Groom, D. Chung, J. Elkins +1 more
2017Biotechnology for Biofuels23 citations Open access
Semantic Scholar
The effect of switchgrass loadings on feedstock solubilization and biofuel production by Clostridium thermocellum
T. Verbeke, G. Garcia, J. Elkins
2017Biotechnology for Biofuels23 citations Open access
Semantic Scholar
Community Analysis of Plant Biomass-Degrading Microorganisms from Obsidian Pool, Yellowstone National Park
T. Vishnivetskaya, Scott D. Hamilton-Brehm, M. Podar, J. Mosher +4 more
2015Microbial Ecology23 citations Open access
Semantic Scholar
A comparative multidimensional LC-MS proteomic analysis reveals mechanisms for furan aldehyde detoxification in Thermoanaerobacter pseudethanolicus 39E
S. Clarkson, Scott D. Hamilton-Brehm, R. Giannone, N. Engle +3 more
2014Biotechnology for Biofuels22 citations Open access
Semantic Scholar
Lawrence Berkeley National Laboratory Lawrence Berkeley National Laboratory Title Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction
I. Anderson, Jason Rodriguez, Dwi Susanti, I. Porat +19 more
200822 citations
Semantic Scholar
Mathematical modeling of hydrolysate diffusion and utilization in cellulolytic biofilms of the extreme thermophile Caldicellulosiruptor obsidiansis.
Zhi-Wu Wang, Scott D. Hamilton-Brehm, A. Lochner, J. Elkins +1 more
2011Bioresource Technology21 citations
Semantic Scholar
Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks
Yu Qiu, Harish Nagarajan, M. Embree, Wendy Shieu +9 more
2013Nature Communications19 citations Open access
Semantic Scholar
Integrated Proteomics and Lipidomics Reveal That the Swarming Motility of Paenibacillus polymyxa Is Characterized by Phospholipid Modification, Surfactant Deployment, and Flagellar Specialization Relative to Swimming Motility
Suresh Poudel, R. Giannone, A. Farmer, S. Campagna +4 more
2019Frontiers in Microbiology16 citations Open access
Semantic Scholar
Impact of Fatty-Acid Labeling of Bacillus subtilis Membranes on the Cellular Lipidome and Proteome
J. Nickels, Suresh Poudel, S. Chatterjee, A. Farmer +8 more
2020Frontiers in Microbiology15 citations Open access
Semantic Scholar
Cloning and characterization of a second acid phosphatase from Sinorhizobium meliloti strain 104A14
S. Deng, J. Elkins, Linda H. Da, L. Botero +1 more
2001Archives of Microbiology13 citations
Semantic Scholar
Implementation of a self-consistent slab model of bilayer structure in the SasView suite
Luo-Xi Tan, J. Elkins, B. Davison, Elizabeth G. Kelley +1 more
2021Journal of Applied Crystallography11 citations Open access
Semantic Scholar
Solvent-induced membrane stress in biofuel production: molecular insights from small-angle scattering and all-atom molecular dynamics simulations
M. D. Smith, S. Pingali, J. Elkins, D. Bolmatov +7 more
202011 citations Open access
Semantic Scholar
Community Analysis of Plant Biomass-Degrading Microorganisms from Obsidian Pool, Yellowstone National Park
T. Vishnivetskaya, Scott D. Hamilton-Brehm, M. Podar, J. Mosher +4 more
2014Microbial Ecology11 citations Open access
Semantic Scholar
Sphingobium lignivorans sp. nov., isolated from river sediment downstream of a paper mill.
Marco N. Allemann, Gerald N. Presley, J. Elkins, Joshua K. Michener
2023International Journal of Systematic and Evolutionary Microbiology10 citations
Semantic Scholar
Anaerobic high-throughput cultivation method for isolation of thermophiles using biomass-derived substrates.
Scott D. Hamilton-Brehm, T. Vishnivetskaya, S. Allman, J. Mielenz +1 more
2012Methods in molecular biology10 citations
Semantic Scholar
Controlled microfluidic production of alginate beads for in situ encapsulation of microbes
M. Kalyanaraman, S. Retterer, T. McKnight, M. Ericson +5 more
20092009 First Annual ORNL Biomedical Science & Engineering Conference9 citations
Semantic Scholar
GENOME ANNOUNCEMENTS Complete Genome Sequence of the Cellulolytic Thermophile Caldicellulosiruptor obsidiansis OB47 T
J. Elkins, A. Lochner, Scott D. Hamilton-Brehm, K. Davenport +16 more
20108 citations
Semantic Scholar
Fermentation of Dilute Acid Pretreated Populus by Clostridium thermocellum, Caldicellulosiruptor bescii, and Caldicellulosiruptor obsidiansis
Kelsey Yee, Miguel Rodriguez, C. Hamilton, Scott D. Hamilton-Brehm +4 more
2015Bioenergy Research7 citations
Semantic Scholar
Neutron Scattering to Study Membrane Systems: From Model Membranes to Living Cells
J. Nickels, S. Chatterjee, C. Stanley, S. Qian +5 more
20176 citations Open access
Semantic Scholar
Determination of the cellulase activity distribution in Clostridium thermocellum and Caldicellulosiruptor obsidiansis cultures using a fluorescent substrate.
J. Morrell-Falvey, J. Elkins, Zhi-Wu Wang
2015Journal of Environmental Science6 citations Open access
Semantic Scholar
Continuous live cell imaging of cellulose attachment by microbes under anaerobic and thermophilic conditions using confocal microscopy.
Zhi-Wu Wang, Seung-Hwan Lee, J. Elkins, Yong-Chao Li +2 more
2013Journal of Environmental Science6 citations
Semantic Scholar

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