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Xiao-Yi Cao · SciRah

Researcher profile · Semantic Scholar

Xiao-Yi Cao

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Xiao-Yi Cao — researcher profile on SciRah

h-index: 13
Works: 33
Citations: 2,966

Most-cited papers

A Comparative Encyclopedia of DNA Elements in the Mouse Genome
Feng Yue, Yong Cheng, A. Breschi, J. Vierstra +133 more
2014Nature1,636 citations Open access
Semantic Scholar
Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing
F. Biase, Xiao-Yi Cao, Sheng Zhong
2014Genome Research309 citations Open access
Semantic Scholar
Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species.
Dan Xie, Chieh-Chun Chen, L. Ptaszek, Shu Xiao +6 more
2010Genome Research242 citations Open access
Semantic Scholar
Comparative epigenomic annotation of regulatory DNA
Shu Xiao, Dan Xie, Xiao-Yi Cao, Pengfei Yu +8 more
2012Cell211 citations Open access
Semantic Scholar
Systematic mapping of RNA-chromatin interactions in vivo
Bharat Sridhar, Marcelo Rivas-Astroza, Tri C. Nguyen, Weizhong Chen +4 more
2017Current Biology195 citations Open access
Semantic Scholar
Intronic Non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees
P. Cingolani, Xiao-Yi Cao, Radhika S. Khetani, Chieh-Chun Chen +10 more
2013BMC Genomics65 citations Open access
Semantic Scholar
SMARCAD1 contributes to regulation of naïve pluripotency by interacting with histone citrullination
Shu Xiao, Jia Lu, Bharat Sridhar, Xiao-Yi Cao +15 more
2017Cell Reports44 citations Open access
Semantic Scholar
Disparate Igf1 expression and growth in the fore- and hind limbs of a marsupial mammal (Monodelphis domestica).
Karen E. Sears, Ankit Patel, Merla J. Hübler, Xiao-Yi Cao +2 more
2012Journal of Experimental Zoology Part B: Molecular and Developmental Evolution28 citations
Semantic Scholar
Understanding Variation in Transcription Factor Binding by Modeling Transcription Factor Genome-Epigenome Interactions
Chieh-Chun Chen, Shu Xiao, Dan Xie, Xiao-Yi Cao +4 more
2013PLoS Comput. Biol.27 citations Open access
Semantic Scholar
Time-variant clustering model for understanding cell fate decisions
Wei Huang, Xiao-Yi Cao, F. Biase, Pengfei Yu +1 more
2014Proceedings of the National Academy of Sciences of the United States of America26 citations Open access
Semantic Scholar
Transcriptomic insights into the genetic basis of mammalian limb diversity
Jennifer A. Maier, Marcelo Rivas-Astroza, Jenny Deng, Anna Dowling +7 more
2017BMC Evolutionary Biology23 citations Open access
Semantic Scholar
Dissecting Early Differentially Expressed Genes in a Mixture of Differentiating Embryonic Stem Cells
Feng Hong, Fang Fang, Xu-Ming He, Xiao-Yi Cao +5 more
2009PLoS Comput. Biol.20 citations Open access
Semantic Scholar
GIVE: portable genome browsers for personal websites
Xiao-Yi Cao, Zhangming Yan, Qiuyang Wu, Alvin Zheng +1 more
2018Genome Biology14 citations Open access
Semantic Scholar
Systematic Mapping of RNA-Chromatin Interactions In Vivo.
Bharat Sridhar, Marcelo Rivas-Astroza, Tri C. Nguyen, Weizhong Chen +4 more
2017Current Biology14 citations Open access
Semantic Scholar
Comparative epigenomics: defining and utilizing epigenomic variations across species, time-course, and individuals
Shu Xiao, Xiao-Yi Cao, Sheng Zhong
2014Wiley Interdisciplinary Reviews: Systems Biology and Medicine14 citations Open access
Semantic Scholar
Towards an Evolutionary Model of Transcription Networks
Dan Xie, Chieh-Chun Chen, Xin He, Xiao-Yi Cao +1 more
2011PLoS Comput. Biol.13 citations Open access
Semantic Scholar
From Clone to Bone: Molecular determinants of marsupial limb integration and constraint
Karen E. Sears, Carolyn K. Doroba, Xiao-Yi Cao, Dan Xie +1 more
201212 citations
Semantic Scholar
GeNemo: a search engine for web-based functional genomic data
Yongqing Zhang, Xiao-Yi Cao, Sheng Zhong
2016Nucleic Acids Res.11 citations Open access
Semantic Scholar
Network-based comparison of temporal gene expression patterns
Wei Huang, Xiao-Yi Cao, Sheng Zhong
2010Bioinform.11 citations Open access
Semantic Scholar
Mechanistic insights of magnolol antimicrobial activity against Mycoplasma using untargeted metabolomic analyses
Qiao Hu, Teng-Fei Zhang, Wen-Ting Zhang, Qin Lu +5 more
2023Frontiers in Cellular and Infection Microbiology10 citations Open access
Semantic Scholar
Mapping personal functional data to personal genomes
Marcelo Rivas-Astroza, Dan Xie, Xiao-Yi Cao, Sheng Zhong
2011Bioinform.10 citations Open access
Semantic Scholar
Mapping RNA–RNA interactome and RNA structure in vivo by MARIO
Tri C. Nguyen, Xiao-Yi Cao, Pengfei Yu, Shu Xiao +6 more
2016Nature Communications8 citations Open access
Semantic Scholar
Enabling interspecies epigenomic comparison with CEpBrowser
Xiao-Yi Cao, Sheng Zhong
2013Bioinform.8 citations Open access
Semantic Scholar
EpiAlignment: alignment with both DNA sequence and epigenomic data
Jia Lu, Xiao-Yi Cao, Sheng Zhong
2019bioRxiv6 citations Open access
Semantic Scholar
Mapping RNA‐chromatin interactions
Sheng Zhong, Bharat Sridhar, Marcelo Rivas-Astroza, Tri C. Nguyen +4 more
20183 citations
Semantic Scholar
A likelihood approach to testing hypotheses on the co-evolution of epigenome and genome
Jia Lu, Xiao-Yi Cao, Sheng Zhong
2018PLoS Comput. Biol.3 citations Open access
Semantic Scholar
GIVE: toward portable genome browsers for personal websites
Xiao-Yi Cao, Zhangming Yan, Qiuyang Wu, Alvin Zheng +1 more
2017bioRxiv2 citations Open access
Semantic Scholar
Development of a joint evolutionary model for the genome and the epigenome
Jia Lu, Xiao-Yi Cao, Sheng Zhong
2018bioRxiv0 citations Open access
Semantic Scholar
Transcriptomic insights into the genetic basis of mammalian limb diversity
Jennifer A. Maier, Marcelo Rivas-Astroza, Jenny Deng, Anna Dowling +7 more
2017BMC Evolutionary Biology0 citations Open access
Semantic Scholar
Pattern-based Search of Epigenomic Data Using GeNemo
Alvin Zheng, Xiao-Yi Cao, Sheng Zhong
2017Journal of Visualized Experiments0 citations Open access
Semantic Scholar
Epigenomic marks improve model predictions of Nanog binding.
Chieh-Chun Chen, Shu Xiao, Dan Xie, Xiao-Yi Cao +4 more
20130 citations Open access
Semantic Scholar
Modeling transcriptomic dynamics and epigenomic conservation
Xiao-Yi Cao
20120 citations
Semantic Scholar
Evidence of Evolution: Homologous Genes in Four Mammal Species
Xiao-Yi Cao, R. Behringer, C. Cretekos, J. Rasweiler
0 citations
Semantic Scholar

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Sheng Zhong×27
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Dan Xie×8
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Chieh-Chun Chen×7
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Shu Xiao×7
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Marcelo Rivas-Astroza

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Zhangming Yan×5

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Tri C. Nguyen×4

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Karen E. Sears×4

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F. Biase — researcher profile on SciRah

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Pengfei Yu — researcher profile on SciRah