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Kranthi Varala · SciRah

Researcher profile · Semantic Scholar

Kranthi Varala

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Kranthi Varala — researcher profile on SciRah

h-index: 24
Works: 52
Citations: 3,334

Most-cited papers

A unified nomenclature of NITRATE TRANSPORTER 1/PEPTIDE TRANSPORTER family members in plants.
S. Léran, Kranthi Varala, J. Boyer, M. Chiurazzi +20 more
2014Trends in Plant Science630 citations Open access
Semantic Scholar
Wasp Gene Expression Supports an Evolutionary Link Between Maternal Behavior and Eusociality
A. Toth, Kranthi Varala, T. C. Newman, F. Miguez +7 more
2007Science312 citations
Semantic Scholar
Comparative Phylogenomics Uncovers the Impact of Symbiotic Associations on Host Genome Evolution
P. Delaux, Kranthi Varala, P. Edger, G. Coruzzi +2 more
2014PLoS Genetics250 citations Open access
Semantic Scholar
Genes involved in convergent evolution of eusociality in bees
S. H. Woodard, B. Fischman, A. Venkat, Matthew E. Hudson +4 more
2011Proceedings of the National Academy of Sciences of the United States of America222 citations Open access
Semantic Scholar
Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants
Kranthi Varala, Amy Marshall-Colón, Jacopo Cirrone, Matthew Dakota Brooks +10 more
2018Proceedings of the National Academy of Sciences of the United States of America200 citations Open access
Semantic Scholar
Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis
Alessia Para, Ying Li, Amy Marshall-Colón, Kranthi Varala +9 more
2014Proceedings of the National Academy of Sciences of the United States of America164 citations Open access
Semantic Scholar
Repeat associated small RNAs vary among parents and following hybridization in maize
Wesley T. Barber, Wei Zhang, H. Win, Kranthi Varala +3 more
2012Proceedings of the National Academy of Sciences of the United States of America158 citations Open access
Semantic Scholar
Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade
José M. Álvarez, Anna-Lena Schinke, Matthew Dakota Brooks, Angelo V. Pasquino +6 more
2020Nature Communications132 citations Open access
Semantic Scholar
Endogenous, Tissue-Specific Short Interfering RNAs Silence the Chalcone Synthase Gene Family in Glycine max Seed Coats[W][OA]
Jigyasa H. Tuteja, G. Zabala, Kranthi Varala, Matthew E. Hudson +1 more
2009The Plant Cell Online119 citations Open access
Semantic Scholar
Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions
M. Brooks, Jacopo Cirrone, Angelo V. Pasquino, José M. Álvarez +8 more
2019Nature Communications117 citations Open access
Semantic Scholar
associated with behaviour across social insect lineages Brain transcriptomic analysis in paper wasps identifies genes
A. Toth, Kranthi Varala, M. Henshaw, S. Rodriguez-Zas +2 more
2010103 citations
Semantic Scholar
Genomic and small RNA sequencing of Miscanthus × giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses
K. Swaminathan, Magdy S. Alabady, Kranthi Varala, E. De Paoli +8 more
2010Genome Biology101 citations Open access
Semantic Scholar
Sympatric ecological speciation meets pyrosequencing: sampling the transcriptome of the apple maggot Rhagoletis pomonella
D. Schwarz, H. M. Robertson, J. Feder, Kranthi Varala +4 more
2009BMC Genomics98 citations Open access
Semantic Scholar
Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey
K. Swaminathan, Kranthi Varala, Matthew E. Hudson
2007BMC Genomics98 citations Open access
Semantic Scholar
A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy
K. Swaminathan, W. Chae, T. Mitros, Kranthi Varala +10 more
2012BMC Genomics96 citations Open access
Semantic Scholar
Evolutionarily informed machine learning enhances the power of predictive gene-to-phenotype relationships
Chia-Yi Cheng, Ying Li, Kranthi Varala, Jessica Bubert +10 more
2021Nature Communications82 citations Open access
Semantic Scholar
A Fluorescence in Situ Hybridization System for Karyotyping Soybean
S. Findley, Steven Cannon, Kranthi Varala, Jian-Chang Du +4 more
2010Genetics74 citations Open access
Semantic Scholar
Plant ecological genomics at the limits of life in the Atacama Desert
G. Eshel, Viviana Araus, S. Undurraga, Daniela C. Soto +23 more
2021Proceedings of the National Academy of Sciences of the United States of America72 citations Open access
Semantic Scholar
Endogenous, Tissue-Speciﬁc Short Interfering RNAs Silence the Chalcone Synthase Gene Family in Glycine max Seed Coats
Seed Coats, G. Zabala, Kranthi Varala, M. Hudson +1 more
200960 citations
Semantic Scholar
The Inheritance Pattern of 24 nt siRNA Clusters in Arabidopsis Hybrids Is Influenced by Proximity to Transposable Elements
Y. Li, Kranthi Varala, S. Moose, Matthew E. Hudson
2012PLoS ONE54 citations Open access
Semantic Scholar
Rapid Genotyping of Soybean Cultivars Using High Throughput Sequencing
Kranthi Varala, K. Swaminathan, Y. Li, Matthew E. Hudson
2011PLoS ONE31 citations Open access
Semantic Scholar
Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max
G. Zabala, E. Campos, Kranthi Varala, S. Bloomfield +7 more
2012BMC Plant Biology30 citations Open access
Semantic Scholar
From milliseconds to lifetimes: Tracking the dynamic behavior of transcription factors in gene networks
Ying Li, Kranthi Varala, G. Coruzzi
2015Trends in Genetics28 citations Open access
Semantic Scholar
“Hit-and-Run” transcription: de novo transcription initiated by a transient bZIP1 “hit” persists after the “run”
J. Doidy, Ying Li, Benjamin Neymotin, Molly B Edwards +3 more
2016BMC Genomics24 citations Open access
Semantic Scholar
A survey of the small RNA population during far-red light-induced apical hook opening
Y. Li, Kranthi Varala, Matthew E. Hudson
2014Frontiers in Plant Science20 citations Open access
Semantic Scholar
“Hit-and-Run” leaves its mark: Catalyst transcription factors and chromatin modification
Kranthi Varala, Y. Li, Amy Marshall-Colón, Alessia Para +1 more
2015Bioessays18 citations Open access
Semantic Scholar
Mixed-Layer Deepening During Heinrich Events : A Multi-Planktonic Foraminiferal d 18 O Approach
A. Toth, Kranthi Varala, T. C. Newman, F. Miguez +7 more
200713 citations
Semantic Scholar
Chilling stress drives organ-specific transcriptional cascades and dampens diurnal oscillation in tomato
T. Agarwal, Xiao-Jin Wang, Frederick Mildenhall, I. Ibrahim +2 more
2023Horticulture Research12 citations Open access
Semantic Scholar
A Systems Biology Approach to Identify Essential Epigenetic Regulators for Specific Biological Processes in Plants
Rachel M. McCoy, Russell Julian, Shoban R. V. Kumar, R. Ranjan +2 more
2021Plants9 citations Open access
Semantic Scholar
CAND1 is required for pollen viability in Arabidopsis thaliana—a test of the adaptive exchange hypothesis
Lihong Li, Melaku Garsamo, Jing Yuan, Xiao-Jin Wang +5 more
2022Frontiers in Plant Science6 citations Open access
Semantic Scholar
Every Cell Counts: Tomato Root Responses to Nitrogen at Single-Cell Resolution
Ryan M. Patrick, Rajeev Ranjan, Shantha R Sumanasinghe, P. J. SanMiguel +2 more
2026bioRxiv4 citations
Semantic Scholar
Organ-delimited gene regulatory networks provide high accuracy in candidate transcription factor selection across diverse processes
Rajeev Ranjan, Sonali Srijan, Somaiah Balekuttira, T. Agarwal +7 more
2024Proceedings of the National Academy of Sciences of the United States of America4 citations Open access
Semantic Scholar
Body Weight Is an Independent Risk Factor for Calcium Phosphate Nephropathy with Sodium Phosphate Colonoscopy Preparation. a Simulation Study: 471
E. Ehrenpreis, Kranthi Varala, B. Hannon
20083 citations
Semantic Scholar
Thiol depletion and disruption of proteostasis contribute to the phytotoxicity of juglone
George W. Meyer, M. Shaikh, Frederick Mildenhall, MaKenzie R. Drowns +6 more
2026bioRxiv1 citations Open access
Semantic Scholar
Uncovering the early and conserved molecular mechanisms of root nitrogen foraging in model and crops
Ying Li, Ryan M. Patrick, Charles R. Peacock, L. Koenigsfeld +9 more
2026BMC Genomics1 citations Open access
Semantic Scholar
The genome of the Wollemi pine, a critically endangered “living fossil” unchanged since the Cretaceous, reveals extensive ancient transposon activity
D. Stevenson, Srividya Ramakrishnan, Cristiane de Santis Alves, L. A. Coelho +26 more
2023bioRxiv1 citations Open access
Semantic Scholar
A Model for Evaluating Hunting and Contraception as Feral Hog Population Control Methods
Jennifer L. Burton, M. Drigo, Ying Li, A. Peralta +4 more
20121 citations
Semantic Scholar
Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max
G. Zabala, E. Campos, Kranthi Varala, S. Bloomfield +7 more
2012BMC Plant Biology1 citations Open access
Semantic Scholar
and associated with behaviour across social insect lineages Brain transcriptomic analysis in paper wasps identifies genes
A. Toth, Kranthi Varala, M. Henshaw, S. Rodriguez-Zas +2 more
20101 citations
Semantic Scholar
Prior-Guided Multi-Omic Transformers for Single-Cell Gene Regulatory Network Inference
Tianyang Xu, Tian-Ci Liu, Niraj Rayamajhi, Ryan M. Patrick +3 more
2026Proceedings of the 32nd ACM SIGKDD Conference on Knowledge Discovery and Data Mining V.20 citations Open access
Semantic Scholar
Decoding gene regulation in plant genomes with artificial intelligence.
Niraj Rayamajhi, Tianyang Xu, Tian-Ci Liu, Jing Gao +2 more
2026Journal of Experimental Botany0 citations Open access
Semantic Scholar
Developmentally regulated genes drive phylogenomic splits in ovule evolution
Veronica M Sondervan, Gil Eshel, Kranthi Varala, Samantha Frangos +11 more
2025Nature Communications0 citations Open access
Semantic Scholar
EvoNet: A phylogenomic and systems biology approach to identify genes underlying plant survival in marginal, low‐N soils
Gloria M. Coruzzi, Rodrigo A. Gutiérrez, R. Mccombie, D. Stevenson +4 more
20250 citations Open access
Semantic Scholar
Genome-wide, Organ-delimited gene regulatory networks (OD-GRNs) provide high accuracy in candidate TF selection across diverse processes
Rajeev Ranjan, Sonali Srijan, Somaiah Balekuttira, T. Agarwal +6 more
2023bioRxiv0 citations Open access
Semantic Scholar
Predictive metabolomics of multiple Atacama plant species unveils a core set of generic metabolites for extreme climate resilience
T. Dussarrat, Sylvain Prigent, C. Latorre, Stéphane Bernillon +11 more
2022New Phytologist0 citations Open access
Semantic Scholar
The 4th Dimension of Transcriptional Networks: TIME
G. Coruzzi, Kranthi Varala, Amy Marshall-Colón, M. Brooks +5 more
2019The FASEB Journal0 citations
Semantic Scholar
Additional file 2: Figure S1. of “Hit-and-Run” transcription: de novo transcription initiated by a transient bZIP1 “hit” persists after the “run”
J. Doidy, Ying Li, Benjamin Neymotin, Molly B Edwards +3 more
20160 citations
Semantic Scholar
BigPlant v2: Fully Automated Construction of a High Resolution Seed Plant Phylogeny
Kranthi Varala
20130 citations
Semantic Scholar
BigPlant v2: Improvements to phylogeny construction and data visualization
Kranthi Varala
20130 citations
Semantic Scholar
Genome composition of Glycine max and sequence diversity among cultivated and exotic accessions
Kranthi Varala
2011Illinois Digital Environment for Access to Learning and Scholarship (University of Illinois at Urbana-Champaign)0 citations Open access
Semantic Scholar

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