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Ran Elkon · SciRah

Researcher profile · Semantic Scholar

Ran Elkon

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Ran Elkon — researcher profile on SciRah

h-index: 45
Works: 105
Citations: 7,825

Most-cited papers

Alternative cleavage and polyadenylation: extent, regulation and function
Ran Elkon, Alejandro P Ugalde, R. Agami
2013Nature reviews genetics771 citations
Semantic Scholar
eRNAs are required for p53-dependent enhancer activity and gene transcription.
C. Melo, J. Drost, Patrick J. Wijchers, H. V. D. van de Werken +8 more
2013Molecules and Cells525 citations Open access
Semantic Scholar
A Pumilio-induced RNA structure switch in p27-3′ UTR controls miR-221 and miR-222 accessibility
M. Kedde, M. van Kouwenhove, W. Zwart, Joachim A. F. Oude Vrielink +2 more
2010Nature Cell Biology463 citations
Semantic Scholar
Functional genetic screens for enhancer elements in the human genome using CRISPR-Cas9
Gozde Korkmaz, R. Lopes, Alejandro P Ugalde, E. Nevedomskaya +5 more
2016Nature Biotechnology406 citations
Semantic Scholar
Transcription Impacts the Efficiency of mRNA Translation via Co-transcriptional N6-adenosine Methylation
B. Slobodin, Rui-Qi Han, V. Calderone, Joachim A. F. Oude Vrielink +3 more
2017Cell399 citations Open access
Semantic Scholar
The poly(A)-binding protein nuclear 1 suppresses alternative cleavage and polyadenylation sites.
Mathias Jenal, Ran Elkon, Fabricio Loayza‐Puch, G. van Haaften +8 more
2012Cell350 citations Open access
Semantic Scholar
ATM-Dependent and -Independent Dynamics of the Nuclear Phosphoproteome After DNA Damage
Ariel Bensimon, A. Schmidt, Y. Ziv, Ran Elkon +4 more
2010Science Signaling303 citations Open access
Semantic Scholar
BRD7 is a candidate tumour suppressor gene required for p53 function
J. Drost, F. Mantovani, F. Tocco, Ran Elkon +7 more
2010Nature Cell Biology203 citations
Semantic Scholar
Apolipoprotein E4 enhances brain inflammation by modulation of the NF-kappaB signaling cascade.
G. Ophir, N. Amariglio, J. Jacob-Hirsch, Ran Elkon +2 more
2005Neurobiology of Disease165 citations Open access
Semantic Scholar
Matrin 3 Binds and Stabilizes mRNA
M. Salton, Ran Elkon, T. Borodina, A. Davydov +3 more
2011PLoS ONE157 citations Open access
Semantic Scholar
E2F mediates enhanced alternative polyadenylation in proliferation
Ran Elkon, J. Drost, G. van Haaften, Mathias Jenal +3 more
2012Genome Biology154 citations Open access
Semantic Scholar
Parallel induction of ATM-dependent pro- and antiapoptotic signals in response to ionizing radiation in murine lymphoid tissue
Sharon Rashi-Elkeles, Ran Elkon, N. Weizman, C. Linhart +6 more
2006Oncogene145 citations
Semantic Scholar
RFX transcription factors are essential for hearing in mice
Ran Elkon, B. Milon, L. Morrison, Manan Shah +20 more
2015Nature Communications142 citations Open access
Semantic Scholar
BRCA1185delAG tumors may acquire therapy resistance through expression of RING-less BRCA1.
R. Drost, Kiranjit K. Dhillon, H. van der Gulden, I. van der Heijden +25 more
2016Journal of Clinical Investigation131 citations Open access
Semantic Scholar
p53 induces transcriptional and translational programs to suppress cell proliferation and growth
Fabricio Loayza‐Puch, J. Drost, Koos Rooijers, R. Lopes +2 more
2013Genome Biology113 citations Open access
Semantic Scholar
Alternative Cleavage and Polyadenylation during Colorectal Cancer Development
A. Morris, Arnold J. Bos, B. Diosdado, Koos Rooijers +5 more
2012Clinical Cancer Research112 citations Open access
Semantic Scholar
Selective inhibition of microRNA accessibility by RBM38 is required for p53 activity
Nicolas Léveillé, Ran Elkon, V. Davalos, Vijayalaxmi Manoharan +10 more
2011Nature Communications112 citations Open access
Semantic Scholar
Major role for mRNA stability in shaping the kinetics of gene induction
Ran Elkon, Eitan Zlotorynski, K. Zeller, R. Agami
2010BMC Genomics106 citations Open access
Semantic Scholar
A cell-type-specific atlas of the inner ear transcriptional response to acoustic trauma
B. Milon, E. Shulman, Kathy S. So, Christopher R. Cederroth +18 more
2021Cell Reports103 citations Open access
Semantic Scholar
Transcriptional modulation induced by ionizing radiation: p53 remains a central player
Sharon Rashi-Elkeles, Ran Elkon, Seagull Shavit, Y. Lerenthal +6 more
2011Molecular Oncology95 citations Open access
Semantic Scholar
Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis
Ran Elkon, Sharon Rashi-Elkeles, Y. Lerenthal, Chaim Linhart +5 more
2005Genome Biology93 citations Open access
Semantic Scholar
Characterization of noncoding regulatory DNA in the human genome
Ran Elkon, R. Agami
2017Nature Biotechnology90 citations
Semantic Scholar
Cell-type-specific analysis of alternative polyadenylation using single-cell transcriptomics data
E. Shulman, Ran Elkon
2019Nucleic Acids Research89 citations Open access
Semantic Scholar
SPIKE: a database of highly curated human signaling pathways
Arnon Paz, Zippora Brownstein, Y. Ber, S. Bialik +8 more
2010Nucleic Acids Res.86 citations Open access
Semantic Scholar
3’UTR Shortening Potentiates MicroRNA-Based Repression of Pro-differentiation Genes in Proliferating Human Cells
Yonit Hoffman, D. Bublik, Alejandro P Ugalde, Ran Elkon +4 more
2016PLoS Genetics85 citations Open access
Semantic Scholar
Cell Type–Specific Transcriptome Analysis Reveals a Major Role for Zeb1 and miR-200b in Mouse Inner Ear Morphogenesis
R. Hertzano, Ran Elkon, Kiyoto Kurima, A. Morrisson +7 more
2011PLoS Genetics84 citations Open access
Semantic Scholar
Integration of Transcriptomics, Proteomics, and MicroRNA Analyses Reveals Novel MicroRNA Regulation of Targets in the Mammalian Inner Ear
Tal Elkan-Miller, I. Ulitsky, R. Hertzano, Anya Rudnicki +7 more
2011PLoS ONE81 citations Open access
Semantic Scholar
Gene architecture directs splicing outcome in separate nuclear spatial regions.
Luna Tammer, Ofir Hameiri, I. Keydar, V. Roy +16 more
2022Molecules and Cells70 citations Open access
Semantic Scholar
SPIKE – a database, visualization and analysis tool of cellular signaling pathways
Ran Elkon, Rita Vesterman, Nira Amit, I. Ulitsky +9 more
2008BMC Bioinformatics69 citations Open access
Semantic Scholar
Genome-wide association meta-analysis identifies 48 risk variants and highlights the role of the stria vascularis in hearing loss
Natalia Trpchevska, M. Freidin, L. Broer, B. Oosterloo +66 more
2022American Journal of Human Genetics68 citations Open access
Semantic Scholar
Transcription Dynamics Regulate Poly(A) Tails and Expression of the RNA Degradation Machinery to Balance mRNA Levels.
B. Slobodin, A. Bahat, Urmila Sehrawat, Shirly Becker-Herman +8 more
2020Molecules and Cells68 citations Open access
Semantic Scholar
FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer–promoter map
T. Hait, D. Amar, R. Shamir, Ran Elkon
2018Genome Biology67 citations Open access
Semantic Scholar
DOMINO: a network‐based active module identification algorithm with reduced rate of false calls
Hagai Levi, Ran Elkon, R. Shamir
2021Molecular Systems Biology64 citations Open access
Semantic Scholar
Gfi1Cre mice have early onset progressive hearing loss and induce recombination in numerous inner ear non-hair cells
Maggie S. Matern, Sarath Vijayakumar, Zachary Margulies, B. Milon +5 more
2017Scientific Reports60 citations Open access
Semantic Scholar
Parallel Profiling of the Transcriptome, Cistrome, and Epigenome in the Cellular Response to Ionizing Radiation
Sharon Rashi-Elkeles, H. Warnatz, Ran Elkon, Ana Kupershtein +10 more
2014Science Signaling59 citations Open access
Semantic Scholar
Functional CRISPR screen identifies AP1-associated enhancer regulating FOXF1 to modulate oncogene-induced senescence
Rui-Qi Han, Li Li, Alejandro P Ugalde, A. Tal +5 more
2018Genome Biology58 citations Open access
Semantic Scholar
Recurrent functional misinterpretation of RNA-seq data caused by sample-specific gene length bias
Shir Mandelboum, Zohar Manber, O. Elroy-Stein, Ran Elkon
2019PLoS Biology51 citations Open access
Semantic Scholar
Genome-Wide Polyadenylation Maps Reveal Dynamic mRNA 3'-End Formation in the Failing Human Heart.
E. Creemers, A. Bawazeer, Alejandro P Ugalde, H. W. V. van Deutekom +10 more
2016Circulation Research50 citations Open access
Semantic Scholar
Gene expression signature of human cancer cell lines treated with the ras inhibitor salirasib (S-farnesylthiosalicylic acid).
R. Blum, Ran Elkon, Shira Yaari, A. Zundelevich +4 more
2007Cancer Research49 citations Open access
Semantic Scholar
LncRNA-OIS1 regulates DPP4 activation to modulate senescence induced by RAS
Li Li, Pieter C. van Breugel, Fabricio Loayza‐Puch, Alejandro P Ugalde +16 more
2018Nucleic Acids Research48 citations Open access
Semantic Scholar
Comparative gene expression profiling reveals partially overlapping but distinct genomic actions of different antiestrogens in human breast cancer cells
C. Scafoglio, C. Ambrosino, L. Cicatiello, L. Altucci +14 more
2006Journal of Cellular Biochemistry47 citations
Semantic Scholar
Deciphering Transcriptional Regulatory Elements That Encode Specific Cell-Cycle Phasing by Comparative Genomics Analysis
Chaim Linhart, Ran Elkon, Y. Shiloh, R. Shamir
2005Cell Cycle47 citations Open access
Semantic Scholar
Proteomic analysis of polyribosomes identifies splicing factors as potential regulators of translation during mitosis
Ranen Aviner, S. Hofmann, Tamar Elman, Anjana Shenoy +4 more
2017Nucleic Acids Research45 citations Open access
Semantic Scholar
GFI1 functions to repress neuronal gene expression in the developing inner ear hair cells
Maggie S. Matern, B. Milon, Erika L. Lipford, Mark S. McMurray +5 more
2020Development44 citations Open access
Semantic Scholar
Faculty of 1000 evaluation for Enhancer redundancy provides phenotypic robustness in mammalian development.
R. Shamir, Ran Elkon
201836 citations Open access
Semantic Scholar
Systematic identification of functional SNPs interrupting 3’UTR polyadenylation signals
E. Shulman, Ran Elkon
2019bioRxiv33 citations Open access
Semantic Scholar
Functional genomic delineation of TLR-induced transcriptional networks
Ran Elkon, Chaim Linhart, Yonit Halperin, Y. Shiloh +1 more
2007BMC Genomics32 citations Open access
Semantic Scholar
High throughput gene expression analysis of the inner ear.
R. Hertzano, Ran Elkon
2012Hearing Research30 citations
Semantic Scholar
Impaired genomic stability and increased oxidative stress exacerbate different features of Ataxia-telangiectasia.
S. Ziv, O. Brenner, N. Amariglio, N. Smorodinsky +14 more
2005Human Molecular Genetics30 citations Open access
Semantic Scholar
The EXPANDER Integrated Platform for Transcriptome Analysis.
T. Hait, Adi Maron-Katz, Dorit Sagir, D. Amar +7 more
2019Journal of Molecular Biology27 citations Open access
Semantic Scholar

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R. Agami×19
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R. Agami — researcher profile on SciRah
R. Shamir×13
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Y. Shiloh×11
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R. Hertzano×8
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Alejandro P Ugalde

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J. Drost — researcher profile on SciRah

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