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A. Tovchigrechko · SciRah

Researcher profile · Semantic Scholar

A. Tovchigrechko

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A. Tovchigrechko — researcher profile on SciRah

h-index: 28
Works: 51
Citations: 3,280

Most-cited papers

GRAMM-X public web server for protein–protein docking
A. Tovchigrechko, I. Vakser
2006Nucleic Acids Res.795 citations Open access
Semantic Scholar
Genomic and functional adaptation in surface ocean planktonic prokaryotes
S. Yooseph, K. Nealson, D. Rusch, J. McCrow +16 more
2010Nature284 citations Open access
Semantic Scholar
Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition
C. Dupont, J. Larsson, S. Yooseph, Karolina Ininbergs +26 more
2014PLoS ONE195 citations Open access
Semantic Scholar
Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment
M. Lensink, S. Velankar, A. Kryshtafovych, Shengua Huang +98 more
2016Proteins: Structure, Function, and Bioinformatics133 citations Open access
Semantic Scholar
Towards a standard diet-induced and biopsy-confirmed mouse model of non-alcoholic steatohepatitis: Impact of dietary fat source
Michelle L. Boland, D. Oró, K. Tølbøl, Sebastian T Thrane +13 more
2019World Journal of Gastroenterology115 citations Open access
Semantic Scholar
Metagenomic Exploration of Viruses throughout the Indian Ocean
S. Williamson, L. Z. Allen, H. Lorenzi, D. Fadrosh +6 more
2012PLoS ONE113 citations Open access
Semantic Scholar
Gastrointestinal microbial populations can distinguish pediatric and adolescent Acute Lymphoblastic Leukemia (ALL) at the time of disease diagnosis
Seesandra V. Rajagopala, S. Yooseph, D. Harkins, K. Moncera +7 more
2016BMC Genomics112 citations Open access
Semantic Scholar
Global Molecular Epidemiology of Respiratory Syncytial Virus from the 2017−2018 INFORM-RSV Study
D. Tabor, F. Fernandes, A. Langedijk, Deidre Wilkins +8 more
2020Journal of Clinical Microbiology107 citations Open access
Semantic Scholar
RsfA (YbeB) Proteins Are Conserved Ribosomal Silencing Factors
R. Häuser, Markus Pech, Jaroslaw Kijek, Hiroshi Yamamoto +10 more
2012PLoS Genetics107 citations Open access
Semantic Scholar
DOCKGROUND resource for studying protein-protein interfaces
D. Douguet, Huei-Chi Chen, A. Tovchigrechko, I. Vakser
2006Bioinform.91 citations Open access
Semantic Scholar
Differences in the Nasopharyngeal Microbiome During Acute Respiratory Tract Infection With Human Rhinovirus and Respiratory Syncytial Virus in Infancy.
C. Rosas-Salazar, M. Shilts, A. Tovchigrechko, S. Schobel +11 more
2016Journal of Infectious Diseases90 citations Open access
Semantic Scholar
S. aureus Evades Macrophage Killing through NLRP3-Dependent Effects on Mitochondrial Trafficking
Taylor S. Cohen, Michelle L. Boland, B. Boland, Virginia N. Takahashi +9 more
2018Cell Reports89 citations Open access
Semantic Scholar
Emergence of new antigenic epitopes in the glycoproteins of human respiratory syncytial virus collected from a US surveillance study, 2015–17
Bin Lu, Hui Liu, D. Tabor, A. Tovchigrechko +4 more
2019Scientific Reports82 citations Open access
Semantic Scholar
Nasopharyngeal Lactobacillus is associated with a reduced risk of childhood wheezing illnesses following acute respiratory syncytial virus infection in infancy
C. Rosas-Salazar, M. Shilts, A. Tovchigrechko, S. Schobel +10 more
2018Journal of Allergy and Clinical Immunology81 citations Open access
Semantic Scholar
DOCKGROUND system of databases for protein recognition studies: Unbound structures for docking
Ying Gao, D. Douguet, A. Tovchigrechko, I. Vakser
2007Proteins: Structure, Function, and Bioinformatics80 citations
Semantic Scholar
Microbial burden and viral exacerbations in a longitudinal multicenter COPD cohort
Jerome Bouquet, David E. Tabor, Jonathan S. Silver, Varsha Nair +5 more
2020Respiratory Research74 citations Open access
Semantic Scholar
Nasopharyngeal Microbiome in Respiratory Syncytial Virus Resembles Profile Associated with Increased Childhood Asthma Risk.
C. Rosas-Salazar, M. Shilts, A. Tovchigrechko, J. Chappell +6 more
2016American Journal of Respiratory and Critical Care Medicine70 citations Open access
Semantic Scholar
Co-occurrence of Anaerobes in Human Chronic Wounds
Yongwook Choi, A. Banerjee, Sean McNish, K. Couch +8 more
2018Microbial Ecology57 citations
Semantic Scholar
Minimally invasive sampling method identifies differences in taxonomic richness of nasal microbiomes in young infants associated with mode of delivery
M. Shilts, C. Rosas-Salazar, A. Tovchigrechko, Emma K. Larkin +9 more
2015Microbial Ecology57 citations Open access
Semantic Scholar
The Salivary Microbiome Is Altered in Children With Eosinophilic Esophagitis and Correlates With Disease Activity
Girish Hiremath, M. Shilts, H. Boone, H. Correa +4 more
2019Clinical and Translational Gastroenterology46 citations Open access
Semantic Scholar
Parallelizing BLAST and SOM Algorithms with MapReduce-MPI Library
Seung-Jin Sul, A. Tovchigrechko
2011IEEE International Symposium on Parallel & Distributed Processing, Workshops and Phd Forum45 citations
Semantic Scholar
Recombinant human B cell repertoires enable screening for rare, specific, and natively paired antibodies
Saravanan Rajan, Michael R. Kierny, A. Mercer, Jin-Cheng Wu +5 more
2018Communications Biology41 citations Open access
Semantic Scholar
Studying protein complexes by the yeast two-hybrid system
Seesandra V. Rajagopala, Patricia M. Sikorski, J. Caufield, A. Tovchigrechko +1 more
2012Methods36 citations Open access
Semantic Scholar
Staphylococcus aureus drives expansion of low-density neutrophils in diabetic mice.
Taylor S. Cohen, Virginia N. Takahashi, J. Bonnell, A. Tovchigrechko +10 more
2019Journal of Clinical Investigation35 citations Open access
Semantic Scholar
Quantitative Differences in the Urinary Proteome of Siblings Discordant for Type 1 Diabetes Include Lysosomal Enzymes.
Moo-jin Suh, A. Tovchigrechko, Vishal Thovarai, Melanie Rolfe +11 more
2015Journal of Proteome Research31 citations
Semantic Scholar
Type 1 Diabetes: Urinary Proteomics and Protein Network Analysis Support Perturbation of Lysosomal Function
Harinder Singh, Yan-Bao Yu, Moo-jin Suh, M. Torralba +11 more
2017Theranostics30 citations Open access
Semantic Scholar
Chemically Defined, High-Density Insect Cell-Based Expression System for Scalable AAV Vector Production
James H Kurasawa, A. Park, Carrie R. Sowers, R. Halpin +6 more
2020Molecular Therapy: Methods & Clinical Development29 citations Open access
Semantic Scholar
Comparative study of urea and tetramethylurea in water by molecular dynamics simulations
A. Tovchigrechko, M. Rodnikova, J. Barthel
199929 citations
Semantic Scholar
The size of the intermolecular energy funnel in protein–protein interactions
J. Hunjan, A. Tovchigrechko, Ying Gao, I. Vakser
2008Proteins: Structure, Function, and Bioinformatics28 citations
Semantic Scholar
High-speed microbial community profiling
D. Haft, A. Tovchigrechko
2012Nature Methods27 citations
Semantic Scholar
A Novel Class of Small Molecule Agonists with Preference for Human over Mouse TLR4 Activation
J. Marshall, D. Heeke, E. Rao, Sean K. Maynard +10 more
2015PLoS ONE26 citations Open access
Semantic Scholar
Characterization of circulating RSV strains among subjects in the OUTSMART-RSV surveillance program during the 2016-17 winter viral season in the United States
A. Ruzin, S. Pastula, Elizabeth Levin-Sparenberg, Xiaohui Jiang +10 more
2018PLoS ONE24 citations Open access
Semantic Scholar
Distinct mucosal microbial communities in infants with surgical necrotizing enterocolitis correlate with age and antibiotic exposure
J. Romano-Keeler, M. Shilts, A. Tovchigrechko, Chunlin Wang +11 more
2018PLoS ONE23 citations Open access
Semantic Scholar
Characterization of human respiratory syncytial virus (RSV) isolated from HIV‐exposed‐uninfected and HIV‐unexposed infants in South Africa during 2015‐2017
Hui Liu, Bin Lu, D. Tabor, A. Tovchigrechko +6 more
2020Influenza and Other Respiratory Viruses19 citations Open access
Semantic Scholar
PGP: parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations
A. Tovchigrechko, P. Venepally, S. Payne
2014Bioinform.19 citations Open access
Semantic Scholar
Antibacterial Monoclonal Antibodies Do Not Disrupt the Intestinal Microbiome or Its Function
Omari Jones-Nelson, A. Tovchigrechko, Matthew S. Glover, F. Fernandes +13 more
2020Antimicrobial Agents and Chemotherapy16 citations Open access
Semantic Scholar
Associations of pathogen‐specific and host‐specific characteristics with disease outcome in patients with Staphylococcus aureus bacteremic pneumonia
B. Sharma-Kuinkel, C. Tkaczyk, J. Bonnell, Li Yu +8 more
2019Clinical & Translational Immunology11 citations Open access
Semantic Scholar
Peptide-MHC Structure Prediction With Mixed Residue and Atom Graph Neural Network
Antoine P. Delaunay, Yunguan Fu, Alberto Bégué, R. McHardy +9 more
2022bioRxiv9 citations Open access
Semantic Scholar
Evaluation of the upper airway microbiome and immune response with nasal epithelial lining fluid absorption and nasal washes
M. Shilts, C. Rosas-Salazar, Christian E. Lynch, A. Tovchigrechko +12 more
2020Scientific Reports9 citations Open access
Semantic Scholar
A MOLECULAR DYNAMICS STUDY OF HYDRATION OF UREA AND TETRAMETHYLUREA
A. Tovchigrechko, M. Rodnikova
19986 citations
Semantic Scholar
Large-Scale Structural Modeling of protein complexes at Low Resolution
Zhengwei Zhu, A. Tovchigrechko, T. Baronova, Ying Gao +3 more
2008J. Bioinform. Comput. Biol.5 citations
Semantic Scholar
NGS-MSTB: Next Generation Sequencing Microbial Surveillance Toolbox
A. Tovchigrechko, Elizabeth Aspinal, T. Slidel, Hui Liu +7 more
20202 citations
Semantic Scholar
A MOLECULAR DYNAMICS STUDY OF HYDRATION OF TETRAMETHYLUREA
M. Rodnikova, A. Tovchigrechko, M. Frank-Kamenetskii
19962 citations
Semantic Scholar
COPD phenotypes revealed by the integrated sputum microbiome and proteome analysis in COPDMAP cohort
A. Tovchigrechko, Chia-Chen Chiang, D. Khatry, C. Emson +6 more
2019Airway cell biology and immunopathology1 citations
Semantic Scholar
Molecular Analysis of Respiratory Syncytial Virus (RSV) F and G Proteins In the OUTSMART Surveillance Program During the 2015–2016 Winter Season in the United States
Bin Lu, Marla Chu, D. Tabor, A. Tovchigrechko +7 more
20171 citations Open access
Semantic Scholar
Bioinformatics for Genomes and Metagenomes in Ecology Studies
D. Rusch, J. Miller, Konstantinos Krampis, A. Tovchigrechko +3 more
20141 citations
Semantic Scholar
1486. Phylogenetic and alpha toxin variant analyses of Staphylococcus aureus strains isolated from patients during the SAATELLITE study
D. Tabor, C. Tkaczyk, A. Tovchigrechko, Bret R. Sellman +13 more
2020Open Forum Infectious Diseases0 citations Open access
Semantic Scholar
Characterization of Circulating RSV Strains Among Patients In The Outsmart RSV Program During the 2015–16 Winter Viral Season in the United States
S. Pastula, Elizabeth Levin-Sparenberg, Xiaohui Jiang, Jon P. Fryzek +7 more
2017Open Forum Infectious Diseases0 citations Open access
Semantic Scholar
WATER-TETRAMETHYLUREA SYSTEM BY THERMAL ANALYSIS
Yu. P. Klapshin, M. Rodnikova, S. T. Dzhabarova, A. Tovchigrechko
19980 citations
Semantic Scholar
NEGATIVE HYDRATION MECHANISM OF UREA
M. Rodnikova, A. Tovchigrechko
19970 citations
Semantic Scholar

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