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R. Halpin · SciRah

Researcher profile · Semantic Scholar

R. Halpin

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R. Halpin — researcher profile on SciRah

h-index: 47
Works: 123
Citations: 7,181

Most-cited papers

The contrasting phylodynamics of human influenza B viruses
D. Vijaykrishna, E. Holmes, Udayan Joseph, M. Fourment +24 more
2015eLife210 citations Open access
Semantic Scholar
Spike Protein Fusion Peptide and Feline Coronavirus Virulence
Hui-Wen Chang, H. Egberink, R. Halpin, D. Spiro +1 more
2012Emerging Infectious Diseases202 citations Open access
Semantic Scholar
Genome Stability of Lyme Disease Spirochetes: Comparative Genomics of Borrelia burgdorferi Plasmids
S. Casjens, E. Mongodin, Wei-Gang Qiu, B. Luft +15 more
2012PLoS ONE189 citations Open access
Semantic Scholar
Quantifying influenza virus diversity and transmission in humans
L. Poon, Timothy Song, Roni Rosenfeld, Xu-Dong Lin +14 more
2016Nature Genetics182 citations Open access
Semantic Scholar
Sequence Analysis of In Vivo Defective Interfering-Like RNA of Influenza A H1N1 Pandemic Virus
K. Saira, Xu-Dong Lin, Jay DePasse, R. Halpin +16 more
2013Journal of Virology178 citations Open access
Semantic Scholar
The soft palate is an important site of adaptation for transmissible influenza viruses
S. Lakdawala, Akila Jayaraman, R. Halpin, E. Lamirande +14 more
2015Nature159 citations Open access
Semantic Scholar
Genomewide Analysis of Reassortment and Evolution of Human Influenza A(H3N2) Viruses Circulating between 1968 and 2011
K. Westgeest, C. Russell, Xu-Dong Lin, Monique I. Spronken +12 more
2013Journal of Virology157 citations Open access
Semantic Scholar
Universal Influenza B Virus Genomic Amplification Facilitates Sequencing, Diagnostics, and Reverse Genetics
Bin Zhou, Xu-Dong Lin, Wei Wang, R. Halpin +4 more
2014Journal of Clinical Microbiology120 citations Open access
Semantic Scholar
Migratory Flyway and Geographical Distance are Barriers to the Gene Flow of Influenza Virus among North American Birds
T. Lam, Hon S. Ip, E. Ghedin, D. Wentworth +9 more
2011Ecology Letters105 citations Open access
Semantic Scholar
Influenza A Virus Migration and Persistence in North American Wild Birds
J. Bahl, S. Krauss, D. Kühnert, M. Fourment +15 more
2013PLoS Pathogens104 citations Open access
Semantic Scholar
Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification
Ashley Sobel Leonard, M. McClain, Gavin J. D. Smith, D. Wentworth +10 more
2016Journal of Virology102 citations Open access
Semantic Scholar
Avian Influenza Viruses in Wild Birds: Virus Evolution in a Multihost Ecosystem
D. Venkatesh, M. Poen, T. Bestebroer, R. Scheuer +20 more
2018Journal of Virology93 citations Open access
Semantic Scholar
Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene
S. Schobel, K. Stucker, M. Moore, L. Anderson +13 more
2016Scientific Reports92 citations Open access
Semantic Scholar
Differences in the Nasopharyngeal Microbiome During Acute Respiratory Tract Infection With Human Rhinovirus and Respiratory Syncytial Virus in Infancy.
C. Rosas-Salazar, M. Shilts, A. Tovchigrechko, S. Schobel +11 more
2016Journal of Infectious Diseases90 citations Open access
Semantic Scholar
Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection
D. Kaul, Raveen Rathnasinghe, M. Ferrés, G. Tan +15 more
2020Nature Communications89 citations Open access
Semantic Scholar
H19 influenza A virus exhibits species-specific MHC-II receptor usage
Umut Karakus, I. Mena, J. Kottur, S. E. El Zahed +15 more
2024Cell Host and Microbe86 citations Open access
Semantic Scholar
North Atlantic Migratory Bird Flyways Provide Routes for Intercontinental Movement of Avian Influenza Viruses
R. J. Dusek, G. Hallgrimsson, Hon S. Ip, J. Jónsson +11 more
2014PLoS ONE83 citations Open access
Semantic Scholar
Nasopharyngeal Lactobacillus is associated with a reduced risk of childhood wheezing illnesses following acute respiratory syncytial virus infection in infancy
C. Rosas-Salazar, M. Shilts, A. Tovchigrechko, S. Schobel +10 more
2018Journal of Allergy and Clinical Immunology81 citations Open access
Semantic Scholar
Sequencing and Analysis of Globally Obtained Human Respiratory Syncytial Virus A and B Genomes
Michael E Bose, Jie He, Susmita Shrivastava, M. Nelson +13 more
2015PLoS ONE75 citations Open access
Semantic Scholar
Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential
J. Bahl, Truc Pham, N. Hill, I. Hussein +13 more
2016PLoS Pathogens70 citations Open access
Semantic Scholar
Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas
N. Forrester, J. Wertheim, V. Dugan, A. J. Auguste +16 more
2017PLoS Neglected Tropical Diseases66 citations Open access
Semantic Scholar
Reversion of Cold-Adapted Live Attenuated Influenza Vaccine into a Pathogenic Virus
Bin Zhou, Victoria A. Meliopoulos, Wei Wang, Xu-Dong Lin +5 more
2016Journal of Virology66 citations Open access
Semantic Scholar
Molecular Evolution and Intraclade Recombination of Enterovirus D68 during the 2014 Outbreak in the United States
Yi Tan, F. Hassan, J. Schuster, A. Simenauer +10 more
2015Journal of Virology61 citations Open access
Semantic Scholar
Genomic analysis of a large set of currently—and historically—important human adenovirus pathogens
A. M. Ismail, Tiange Cui, Kalpana Dommaraju, Gurdeep Singh +22 more
2018Emerging Microbes and Infections60 citations Open access
Semantic Scholar
Analysis of Recombinant H7N9 Wild-Type and Mutant Viruses in Pigs Shows that the Q226L Mutation in HA Is Important for Transmission
Qinfang Liu, Bin Zhou, Wen-Jun Ma, B. Bawa +10 more
2014Journal of Virology58 citations Open access
Semantic Scholar
Phylodynamics of Enterovirus A71-Associated Hand, Foot, and Mouth Disease in Viet Nam
J. Geoghegan, L. Tan, D. Kühnert, R. Halpin +28 more
2015Journal of Virology57 citations Open access
Semantic Scholar
Minimally invasive sampling method identifies differences in taxonomic richness of nasal microbiomes in young infants associated with mode of delivery
M. Shilts, C. Rosas-Salazar, A. Tovchigrechko, Emma K. Larkin +9 more
2015Microbial Ecology57 citations Open access
Semantic Scholar
Poor Immunogenicity, Not Vaccine Strain Egg Adaptation, May Explain the Low H3N2 Influenza Vaccine Effectiveness in 2012–2013
S. Cobey, S. Gouma, Kaela Parkhouse, Benjamin S Chambers +13 more
2018Clinical Infectious Diseases55 citations Open access
Semantic Scholar
The effective rate of influenza reassortment is limited during human infection
Ashley Sobel Leonard, M. McClain, Gavin J. D. Smith, D. Wentworth +11 more
2017PLoS Pathogens51 citations Open access
Semantic Scholar
Equine Influenza A(H3N8) Virus Isolated from Bactrian Camel, Mongolia
Myagmarsukh Yondon, Batsukh Zayat, M. Nelson, Gary L. Heil +7 more
2014Emerging Infectious Diseases51 citations Open access
Semantic Scholar
Genomic reassortment of influenza A virus in North American swine, 1998-2011.
M. Nelson, S. Detmer, D. Wentworth, Yi Tan +7 more
2012Journal of General Virology49 citations Open access
Semantic Scholar
Whole Genome Analyses of G1P[8] Rotavirus Strains From Vaccinated and Non-Vaccinated South African Children Presenting With Diarrhea
Nonkululeko B. Magagula, M. Esona, Martin M. Nyaga, Karla M. Stucker +6 more
2014Journal of Medical Virology46 citations Open access
Semantic Scholar
Multiplex Reverse Transcription-PCR for Simultaneous Surveillance of Influenza A and B Viruses
Bin Zhou, Yi-Mo Deng, J. Barnes, O. Sessions +13 more
2017Journal of Clinical Microbiology45 citations Open access
Semantic Scholar
Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability
Jeffrey S. Hall, Joshua L Teslaa, S. Nashold, R. Halpin +4 more
2013Virology Journal45 citations Open access
Semantic Scholar
Extensive Geographical Mixing of 2009 Human H1N1 Influenza A Virus in a Single University Community
E. Holmes, E. Ghedin, R. Halpin, T. Stockwell +11 more
2011Journal of Virology43 citations Open access
Semantic Scholar
Whole genome detection of rotavirus mixed infections in human, porcine and bovine samples co-infected with various rotavirus strains collected from sub-Saharan Africa
M. Nyaga, K. Jere, M. Esona, M. Seheri +14 more
2015Infection, Genetics and Evolution42 citations Open access
Semantic Scholar
Reassortment of Influenza A Viruses in Wild Birds in Alaska before H5 Clade 2.3.4.4 Outbreaks
N. Hill, I. Hussein, K. Davis, E. Ma +10 more
2017Emerging Infectious Diseases41 citations Open access
Semantic Scholar
Multiple Introductions and Antigenic Mismatch with Vaccines May Contribute to Increased Predominance of G12P[8] Rotaviruses in the United States
Kristen M. Ogden, Yi Tan, Asmik Akopov, Laura S. Stewart +15 more
2018Journal of Virology40 citations Open access
Semantic Scholar
Large-Scale Complete-Genome Sequencing and Phylodynamic Analysis of Eastern Equine Encephalitis Virus Reveals Source-Sink Transmission Dynamics in the United States
Yi Tan, T. Lam, Lea A. Heberlein-Larson, S. Smole +15 more
2018Journal of Virology38 citations Open access
Semantic Scholar
Adaptation of Pandemic H2N2 Influenza A Viruses in Humans
Udayan Joseph, M. Linster, Yuka Suzuki, S. Krauss +10 more
2014Journal of Virology33 citations Open access
Semantic Scholar
Whole-genome analyses of DS-1-like human G2P[4] and G8P[4] rotavirus strains from Eastern, Western and Southern Africa
M. Nyaga, K. Stucker, M. Esona, K. Jere +15 more
2014Virus genes33 citations Open access
Semantic Scholar
Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing
Kelvin Li, Susmita Shrivastava, A. Brownley, Dan Katzel +5 more
2012Virology Journal32 citations Open access
Semantic Scholar
Where do all the subtypes go? Temporal dynamics of H8–H12 influenza A viruses in waterfowl
M. Wille, N. Latorre-Margalef, C. Tolf, R. Halpin +6 more
2018Virus Evolution31 citations Open access
Semantic Scholar
Whole-genome sequencing and analyses identify high genetic heterogeneity, diversity and endemicity of rotavirus genotype P[6] strains circulating in Africa
M. Nyaga, Yi Tan, M. Seheri, R. Halpin +9 more
2018Infection, Genetics and Evolution31 citations Open access
Semantic Scholar
Intermediate turbidity elicits the greatest antipredator response and generates repeatable behaviour in mosquitofish
S. Ehlman, R. Halpin, Cameron Jones, A. Munson +2 more
2019Animal Behaviour30 citations Open access
Semantic Scholar
Dual infection of novel influenza viruses A/H1N1 and A/H3N2 in a cluster of Cambodian patients.
Christopher A. Myers, M. Kasper, Chadwick Y. Yasuda, C. Savuth +7 more
2011American Journal of Tropical Medicine and Hygiene30 citations Open access
Semantic Scholar
Chemically Defined, High-Density Insect Cell-Based Expression System for Scalable AAV Vector Production
James H Kurasawa, A. Park, Carrie R. Sowers, R. Halpin +6 more
2020Molecular Therapy: Methods & Clinical Development29 citations Open access
Semantic Scholar
Spread and Persistence of Influenza A Viruses in Waterfowl Hosts in the North American Mississippi Migratory Flyway
Anthony C. Fries, J. Nolting, A. Bowman, Xu-Dong Lin +9 more
2015Journal of Virology29 citations Open access
Semantic Scholar
Isolation, propagation, genome analysis and epidemiology of HKU1 betacoronaviruses.
S. Dominguez, Susmita Shrivastava, Andrew Berglund, Zhaohui Qian +10 more
2014Journal of General Virology28 citations Open access
Semantic Scholar
Genomic analysis of 16 Colorado human NL63 coronaviruses identifies a new genotype, high sequence diversity in the N-terminal domain of the spike gene and evidence of recombination.
S. Dominguez, Gregory E. Sims, D. Wentworth, R. Halpin +3 more
2012Journal of General Virology28 citations Open access
Semantic Scholar

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