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C. Dupont · SciRah

Researcher profile · Semantic Scholar

C. Dupont

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C. Dupont — researcher profile on SciRah

h-index: 66
Works: 164
Citations: 14K

Most-cited papers

A genomic catalog of Earth’s microbiomes
Stephen Nayfach, S. Roux, R. Seshadri, D. Udwary +263 more
2020Nature Biotechnology783 citations Open access
Semantic Scholar
Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus
T. Mock, R. Otillar, Jan Strauss, M. McMullan +40 more
2017Nature343 citations Open access
Semantic Scholar
Coral microbiome manipulation elicits metabolic and genetic restructuring to mitigate heat stress and evade mortality
E. Santoro, R. Borges, J. Espinoza, M. Freire +17 more
2021Science Advances204 citations Open access
Semantic Scholar
Host Genetic control of the oral microbiome in Health and Disease
A. Gomez, J. Espinoza, D. Harkins, P. Leong +12 more
2017Cell Host and Microbe194 citations Open access
Semantic Scholar
Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm
Jennifer M. Michaud, L. Thompson, D. Kaul, J. Espinoza +11 more
2018Nature Communications154 citations Open access
Semantic Scholar
Planktonic Marine Archaea.
A. Santoro, R. A. Richter, C. Dupont
2019Annual Review of Marine Science138 citations Open access
Semantic Scholar
Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom
Sarah R. Smith, C. Dupont, James K. McCarthy, J. Broddrick +14 more
2019Nature Communications136 citations Open access
Semantic Scholar
Genetic tool development in marine protists: emerging model organisms for experimental cell biology
Drahomíra Faktorová, R. Nisbet, J. Fernández-Robledo, E. Casacuberta +109 more
2019Nature Methods133 citations Open access
Semantic Scholar
Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions
Barbara Bayer, M. Saito, M. McIlvin, S. Lücker +4 more
2020The ISME Journal109 citations Open access
Semantic Scholar
Mechanisms of carbon dioxide acquisition and CO2 sensing in marine diatoms: a gateway to carbon metabolism
Y. Matsuda, B. Hopkinson, Kensuke Nakajima, C. Dupont +1 more
2017Philosophical Transactions of the Royal Society B: Biological Sciences102 citations Open access
Semantic Scholar
Interplay of Staphylococcal and Host Proteases Promotes Skin Barrier Disruption in Netherton Syndrome
Michael R. Williams, L. Cau, Yichen Wang, D. Kaul +9 more
2020Cell Reports95 citations Open access
Semantic Scholar
Patterns of thaumarchaeal gene expression in culture and diverse marine environments
P. Carini, C. Dupont, A. Santoro
2017bioRxiv94 citations Open access
Semantic Scholar
Supragingival Plaque Microbiome Ecology and Functional Potential in the Context of Health and Disease
J. Espinoza, D. Harkins, M. Torralba, A. Gomez +11 more
2018mBio90 citations Open access
Semantic Scholar
Microbiome disturbance and resilience dynamics of the upper respiratory tract during influenza A virus infection
D. Kaul, Raveen Rathnasinghe, M. Ferrés, G. Tan +15 more
2020Nature Communications89 citations Open access
Semantic Scholar
A myovirus encoding both photosystem I and II proteins enhances cyclic electron flow in infected Prochlorococcus cells
S. Fridman, J. Flores-Uribe, S. Larom, O. Alalouf +15 more
2017Nature Microbiology86 citations Open access
Semantic Scholar
Mechanism-of-Action Classification of Antibiotics by Global Transcriptome Profiling
A. O'Rourke, S. Beyhan, Yongwook Choi, Pavel Morales +8 more
2020Antimicrobial Agents and Chemotherapy85 citations Open access
Semantic Scholar
Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom[OPEN]
James K. McCarthy, Sarah R. Smith, J. McCrow, Maxine H. Tan +8 more
2017The Plant Cell85 citations Open access
Semantic Scholar
Tracking the rise of eukaryotes to ecological dominance with zinc isotopes
T. Isson, G. Love, C. Dupont, C. Reinhard +14 more
2018Geobiology84 citations Open access
Semantic Scholar
Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean
Natalie R. Cohen, M. McIlvin, Dawn M. Moran, N. Held +9 more
2021Nature Microbiology82 citations
Semantic Scholar
A comparative metagenomic study reveals microbial diversity and their role in the biogeochemical cycling of Pangong lake.
Rashmi Rathour, Juhi K. Gupta, Arti Mishra, A. Rajeev +2 more
2020Science of the Total Environment82 citations
Semantic Scholar
The Baltic Sea Virome: Diversity and Transcriptional Activity of DNA and RNA Viruses
L. Zeigler Allen, J. McCrow, Karolina Ininbergs, C. Dupont +6 more
2017mSystems78 citations Open access
Semantic Scholar
Petrobactin, a siderophore produced by Alteromonas, mediates community iron acquisition in the global ocean
Lauren E. Manck, Jiwoon Park, B. Tully, Alfonso M Poire +3 more
2021The ISME Journal74 citations Open access
Semantic Scholar
Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis
D. Warshan, Josh L. Espinoza, R. Stuart, R. Richter +13 more
2017The ISME Journal74 citations Open access
Semantic Scholar
Global biogeography of Prochlorococcus genome diversity in the surface ocean
Alyssa G. Kent, C. Dupont, S. Yooseph, A. Martiny
2016The ISME Journal72 citations Open access
Semantic Scholar
Lateral Gene Transfer Shapes the Distribution of RuBisCO among Candidate Phyla Radiation Bacteria and DPANN Archaea
Alexander L. Jaffe, C. Castelle, C. Dupont, J. Banfield
2018bioRxiv71 citations Open access
Semantic Scholar
Pervasive iron limitation at subsurface chlorophyll maxima of the California Current
S. Hogle, C. Dupont, B. Hopkinson, A. L. King +7 more
2018Proceedings of the National Academy of Sciences of the United States of America67 citations Open access
Semantic Scholar
Diatom centromeres suggest a mechanism for nuclear DNA acquisition
Rachel E. Diner, C. Noddings, Nathan C. Lian, Anthony K. Kang +11 more
2017Proceedings of the National Academy of Sciences of the United States of America60 citations Open access
Semantic Scholar
Abundant nitrite-oxidizing metalloenzymes in the mesopelagic zone of the tropical Pacific Ocean
M. Saito, M. McIlvin, Dawn M. Moran, A. Santoro +8 more
2020Nature Geoscience57 citations Open access
Semantic Scholar
Universal loop assembly: open, efficient and cross-kingdom DNA fabrication
Bernardo Pollak, Tamara Matúte, Isaac Núñez, Ariel Cerda +7 more
2020Synthetic Biology54 citations Open access
Semantic Scholar
Nutrient Stoichiometry Shapes Microbial Community Structure in an Evaporitic Shallow Pond
Z. Lee, A. Poret-Peterson, J. Siefert, D. Kaul +6 more
2017Frontiers in Microbiology54 citations Open access
Semantic Scholar
Meta‐omic analyses of Baltic Sea cyanobacteria: diversity, community structure and salt acclimation
Narin A. Celepli, J. Sundh, M. Ekman, C. Dupont +3 more
2017Environmental Microbiology54 citations Open access
Semantic Scholar
Genomic Changes Associated with the Evolutionary Transitions of Nostoc to a Plant Symbiont
D. Warshan, Anton Liaimer, Eric R. A. Pederson, Sea-Yong Kim +7 more
2018Molecular biology and evolution52 citations Open access
Semantic Scholar
Competition between skin antimicrobial peptides and commensal bacteria in type 2 inflammation enables survival of S. aureus
T. Nakatsuji, S. Brinton, Kellen J. Cavagnero, A. O'Neill +9 more
2023Cell Reports45 citations Open access
Semantic Scholar
Influence of Substrate Concentration on the Culturability of Heterotrophic Soil Microbes Isolated by High-Throughput Dilution-to-Extinction Cultivation
Ryan P. Bartelme, Joy M. Custer, C. Dupont, J. Espinoza +3 more
2020Msphere43 citations Open access
Semantic Scholar
Cross‐compartment metabolic coupling enables flexible photoprotective mechanisms in the diatom Phaeodactylum tricornutum
J. Broddrick, Niu Du, Sarah R. Smith, Yoshinori Tsuji +8 more
2019New Phytologist42 citations Open access
Semantic Scholar
Distribution of mercury‐cycling genes in the Arctic and equatorial Pacific Oceans and their relationship to mercury speciation
K. Bowman, R. E. Collins, A. Agather, C. Lamborg +5 more
2019Limnology and Oceanography41 citations Open access
Semantic Scholar
Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment
J. Okie, A. Poret-Peterson, Z. Lee, A. Richter +6 more
2019bioRxiv41 citations Open access
Semantic Scholar
Global ecotypes in the ubiquitous marine clade SAR86
A. Hoarfrost, Stephen Nayfach, J. Ladau, S. Yooseph +3 more
2019The ISME Journal39 citations Open access
Semantic Scholar
Dissection of Microbial Community Functions during a Cyanobacterial Bloom in the Baltic Sea via Metatranscriptomics
C. Berg, C. Dupont, Johannes Asplund-Samuelsson, Narin A. Celepli +5 more
2018Frontiers in Marine Science39 citations Open access
Semantic Scholar
Integrated Regulatory and Metabolic Networks of the Marine Diatom Phaeodactylum tricornutum Predict the Response to Rising CO2 Levels
Jennifer Levering, C. Dupont, A. Allen, B. Palsson +1 more
2017mSystems39 citations Open access
Semantic Scholar
Genomic Insights into waste valorized extracellular polymeric substances (EPS) produced by Bacillus sp. ISTL8.
Juhi K. Gupta, Rashmi Rathour, C. Dupont, D. Kaul +1 more
2020Environmental Research36 citations
Semantic Scholar
Microbial functional diversity across biogeochemical provinces in the central Pacific Ocean
J. Saunders, M. McIlvin, C. Dupont, D. Kaul +7 more
2022Proceedings of the National Academy of Sciences of the United States of America34 citations Open access
Semantic Scholar
Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach
J. Espinoza, C. Dupont, A. O'Rourke, S. Beyhan +8 more
2021PLoS Comput. Biol.34 citations Open access
Semantic Scholar
Revealing ocean-scale biochemical structure with a deep-diving vertical profiling autonomous vehicle
J. Breier, M. Jakuba, M. Saito, G. Dick +8 more
2020Science Robotics34 citations Open access
Semantic Scholar
The diversity of CO2-concentrating mechanisms in marine diatoms as inferred from their genetic content
Chen Shen, C. Dupont, B. Hopkinson
2017Journal of Experimental Botany33 citations Open access
Semantic Scholar
Bidirectional C and N transfer and a potential role for sulfur in an epiphytic diazotrophic mutualism
R. Stuart, Eric R. A. Pederson, Philip D. Weyman, P. Weber +2 more
2020The ISME Journal31 citations Open access
Semantic Scholar
Plastics select for distinct early colonizing microbial populations with reproducible traits across environmental gradients.
Ryan P. Bos, D. Kaul, E. Zettler, Jeffrey M. Hoffman +3 more
2023Environmental Microbiology28 citations Open access
Semantic Scholar
Interactions between fecal gut microbiome, enteric pathogens, and energy regulating hormones among acutely malnourished rural Gambian children
Helen M. Nabwera, J. Espinoza, A. Worwui, Modupeh Betts +15 more
2021EBioMedicine28 citations Open access
Semantic Scholar
Transcriptomic Study of Substrate-Specific Transport Mechanisms for Iron and Carbon in the Marine Copiotroph Alteromonas macleodii
Lauren E. Manck, J. Espinoza, C. Dupont, K. Barbeau
2020mSystems28 citations Open access
Semantic Scholar
VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
J. Espinoza, C. Dupont
2022BMC Bioinformatics27 citations Open access
Semantic Scholar

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