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M. Shilts · SciRah

Researcher profile · Semantic Scholar

M. Shilts

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M. Shilts — researcher profile on SciRah

h-index: 23
Works: 76
Citations: 1,638

Most-cited papers

COVID‐19 severity from Omicron and Delta SARS‐CoV‐2 variants
J. Wrenn, S. Pakala, G. Vestal, M. Shilts +9 more
2022Influenza and Other Respiratory Viruses92 citations Open access
Semantic Scholar
Respiratory Syncytial Virus whole-genome sequencing identifies convergent evolution of sequence duplication in the C-terminus of the G gene
S. Schobel, K. Stucker, M. Moore, L. Anderson +13 more
2016Scientific Reports92 citations Open access
Semantic Scholar
SIV-INDUCED INSTABILITY OF THE CHIMPANZEE GUT MICROBIOME
Andrew H. Moeller, M. Shilts, Yingying Li, Rebecca S. Rudicell +5 more
2013Cell Host and Microbe92 citations Open access
Semantic Scholar
Differences in the Nasopharyngeal Microbiome During Acute Respiratory Tract Infection With Human Rhinovirus and Respiratory Syncytial Virus in Infancy.
C. Rosas-Salazar, M. Shilts, A. Tovchigrechko, S. Schobel +11 more
2016Journal of Infectious Diseases90 citations Open access
Semantic Scholar
Dietary Arginine Regulates Severity of Experimental Colitis and Affects the Colonic Microbiome
Kshipra Singh, A. Gobert, Lori A. Coburn, D. Barry +11 more
2019Frontiers in Cellular and Infection Microbiology89 citations Open access
Semantic Scholar
SARS-CoV-2 infection and viral load are associated with the upper respiratory tract microbiome
C. Rosas-Salazar, K. Kimura, M. Shilts, B. Strickland +7 more
2021Journal of Allergy and Clinical Immunology83 citations Open access
Semantic Scholar
Nasopharyngeal Lactobacillus is associated with a reduced risk of childhood wheezing illnesses following acute respiratory syncytial virus infection in infancy
C. Rosas-Salazar, M. Shilts, A. Tovchigrechko, S. Schobel +10 more
2018Journal of Allergy and Clinical Immunology81 citations Open access
Semantic Scholar
Chronic Rhinosinusitis in Elderly Patients is Associated with an Exaggerated Neutrophilic Pro-Inflammatory Response to Pathogenic Bacteria
Justin C. Morse, Ping Li, K. Ely, M. Shilts +7 more
2018Journal of Allergy and Clinical Immunology73 citations Open access
Semantic Scholar
Nasopharyngeal Microbiome in Respiratory Syncytial Virus Resembles Profile Associated with Increased Childhood Asthma Risk.
C. Rosas-Salazar, M. Shilts, A. Tovchigrechko, J. Chappell +6 more
2016American Journal of Respiratory and Critical Care Medicine70 citations Open access
Semantic Scholar
Patterns of Olfactory Dysfunction in Chronic Rhinosinusitis Identified by Hierarchical Cluster Analysis and Machine Learning Algorithms
Justin C. Morse, M. Shilts, K. Ely, Ping Li +7 more
2018International Forum of Allergy and Rhinology66 citations Open access
Semantic Scholar
Metatranscriptomics to characterize respiratory virome, microbiome, and host response directly from clinical samples
Seesandra V. Rajagopala, Nicole Bakhoum, S. Pakala, M. Shilts +7 more
2020Cell Reports Methods61 citations Open access
Semantic Scholar
Exclusive Breastfeeding, the Early-life Microbiome and Immune Response, and Common Childhood Respiratory Illnesses
C. Rosas-Salazar, M. Shilts, Zheng-Zheng Tang, Q. Hong +9 more
2022Journal of Allergy and Clinical Immunology57 citations Open access
Semantic Scholar
Minimally invasive sampling method identifies differences in taxonomic richness of nasal microbiomes in young infants associated with mode of delivery
M. Shilts, C. Rosas-Salazar, A. Tovchigrechko, Emma K. Larkin +9 more
2015Microbial Ecology57 citations Open access
Semantic Scholar
Severe COVID-19 Is Associated With an Altered Upper Respiratory Tract Microbiome
M. Shilts, C. Rosas-Salazar, B. Strickland, K. Kimura +18 more
2022Frontiers in Cellular and Infection Microbiology50 citations Open access
Semantic Scholar
The Salivary Microbiome Is Altered in Children With Eosinophilic Esophagitis and Correlates With Disease Activity
Girish Hiremath, M. Shilts, H. Boone, H. Correa +4 more
2019Clinical and Translational Gastroenterology46 citations Open access
Semantic Scholar
Systematic, taxonomic and biogeographic relationships of Argentine flat oysters.
M. Shilts, M. Pascual, D. O. Foighil
2007Molecular Phylogenetics and Evolution41 citations
Semantic Scholar
Multiple Introductions and Antigenic Mismatch with Vaccines May Contribute to Increased Predominance of G12P[8] Rotaviruses in the United States
Kristen M. Ogden, Yi Tan, Asmik Akopov, Laura S. Stewart +15 more
2018Journal of Virology40 citations Open access
Semantic Scholar
Large-Scale Complete-Genome Sequencing and Phylodynamic Analysis of Eastern Equine Encephalitis Virus Reveals Source-Sink Transmission Dynamics in the United States
Yi Tan, T. Lam, Lea A. Heberlein-Larson, S. Smole +15 more
2018Journal of Virology38 citations Open access
Semantic Scholar
Lack of selective resistance of influenza A virus in presence of host-targeted antiviral, UV-4B
Kelly L. Warfield, Kaitlyn Schaaf, Lisa Evans DeWald, K. Spurgers +8 more
2019Scientific Reports33 citations Open access
Semantic Scholar
Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes
David Williams, W. Trimble, M. Shilts, Folker Meyer +1 more
2013BMC Genomics31 citations Open access
Semantic Scholar
Complex Epidemiological Dynamics of Eastern Equine Encephalitis Virus in Florida.
Lea A. Heberlein-Larson, Yi Tan, L. Stark, A. Cannons +3 more
2019American Journal of Tropical Medicine and Hygiene26 citations Open access
Semantic Scholar
Hoxa-5 acts in segmented somites to regulate cervical vertebral morphology.
Jessica W Chen, Soombal Zahid, M. Shilts, Sara J. Weaver +8 more
2013Mechanisms of Development26 citations Open access
Semantic Scholar
The emergence and evolution of influenza A (H1α) viruses in swine in Canada and the United States.
M. Nelson, M. Culhane, Nídia S. Trovão, D. Patnayak +5 more
2017Journal of General Virology25 citations Open access
Semantic Scholar
Distinct mucosal microbial communities in infants with surgical necrotizing enterocolitis correlate with age and antibiotic exposure
J. Romano-Keeler, M. Shilts, A. Tovchigrechko, Chunlin Wang +11 more
2018PLoS ONE23 citations Open access
Semantic Scholar
Evolutionary dynamics and molecular epidemiology of West Nile virus in New York State: 1999–2015
Sean M Bialosuknia, Yi Tan, S. Zink, C. A. Koetzner +11 more
2019Virus Evolution20 citations Open access
Semantic Scholar
Upper Respiratory Tract Bacterial-Immune Interactions during Respiratory Syncytial Virus Infection in Infancy
C. Rosas-Salazar, Zheng-Zheng Tang, M. Shilts, K. Turi +9 more
2021Journal of Allergy and Clinical Immunology18 citations Open access
Semantic Scholar
Summer outbreak of severe RSV-B disease, Minnesota, 2017 associated with emergence of a genetically distinct viral lineage.
Beth K. Thielen, Erica Bye, Xiong Wang, S. Maroushek +10 more
2020Journal of Infectious Diseases18 citations Open access
Semantic Scholar
Evolutionary dynamics of respiratory syncytial virus in Buenos Aires: Viral diversity, migration, and subgroup replacement
S. Goya, M. Lucion, M. Shilts, M. B. del Valle Juarez +4 more
2023Virus Evolution15 citations Open access
Semantic Scholar
Upper respiratory tract microbiota dynamics following COVID-19 in adults
C. Rosas-Salazar, K. Kimura, M. Shilts, B. Strickland +8 more
2023Microbial Genomics14 citations Open access
Semantic Scholar
Cotton rat lung transcriptome reveals host immune response to Respiratory Syncytial Virus infection
Seesandra V. Rajagopala, Harinder Singh, Mira C. Patel, Wei Wang +6 more
2018Scientific Reports14 citations Open access
Semantic Scholar
Viral Genetic Determinants of Prolonged Respiratory Syncytial Virus Infection Among Infants in a Healthy Term Birth Cohort
Dylan Lawless, C. McKennan, S. Das, Thomas Junier +9 more
2022medRxiv13 citations Open access
Semantic Scholar
The Respiratory Microbiome After Lung Transplantation: Reflection or Driver of Respiratory Disease?
C. C. Eskind, M. Shilts, C. Shaver, S. Das +1 more
2021American Journal of Transplantation13 citations Open access
Semantic Scholar
Nasopharyngeal Haemophilus and local immune response during infant respiratory syncytial virus infection
M. Shilts, C. Rosas-Salazar, K. Turi, D. Rajan +7 more
2020Journal of Allergy and Clinical Immunology13 citations Open access
Semantic Scholar
Influence of Sex on Respiratory Syncytial Virus Genotype Infection Frequency and Nasopharyngeal Microbiome
Yi Tan, M. Shilts, C. Rosas-Salazar, Vinita Puri +7 more
2023Journal of Virology11 citations Open access
Semantic Scholar
Idiopathic subglottic stenosis arises at the interface of host and pathogen.
A. Gelbard, M. Shilts, B. Strickland, Kevin M. Motz +15 more
2022medRxiv11 citations Open access
Semantic Scholar
Molecular characterization of respiratory syncytial viruses circulating in a paediatric cohort in Amman, Jordan
N. Trovão, N. Khuri-Bulos, Yi Tan, Vinita Puri +6 more
2019Microbial Genomics11 citations Open access
Semantic Scholar
Idiopathic subglottic stenosis arises at the epithelial interface of host and pathogen
A. Gelbard, M. Shilts, B. Strickland, Kevin M. Motz +15 more
2023Research Square9 citations Open access
Semantic Scholar
Evaluation of the upper airway microbiome and immune response with nasal epithelial lining fluid absorption and nasal washes
M. Shilts, C. Rosas-Salazar, Christian E. Lynch, A. Tovchigrechko +12 more
2020Scientific Reports9 citations Open access
Semantic Scholar
Mucosal Gene Expression in Response to SARS-CoV-2 Is Associated with Viral Load
Seesandra V. Rajagopala, B. Strickland, S. Pakala, K. Kimura +10 more
2023Journal of Virology8 citations Open access
Semantic Scholar
Species-specific transcriptomic changes upon respiratory syncytial virus infection in cotton rats
B. Strickland, Seesandra V. Rajagopala, Arash Kamali, M. Shilts +5 more
2022Scientific Reports8 citations Open access
Semantic Scholar
Microbial community structure and composition is associated with host species and sex in Sigmodon cotton rats
B. Strickland, Mira C. Patel, M. Shilts, H. Boone +9 more
2020Animal Microbiome8 citations Open access
Semantic Scholar
The Association of Prenatal Dietary Factors with Child Autism Diagnosis and Autism-Related Traits Using a Mixtures Approach: Results from the Environmental Influences on Child Health Outcomes Cohort
Megan G. Bragg, J. Rando, Kecia N. Carroll, S. Eick +278 more
2025Journal of NutriLife7 citations Open access
Semantic Scholar
Proton Pump Inhibitors Modulate Gene Expression Profile in Esophageal Mucosa and Microbiome.
Seesandra V. Rajagopala, M. Shilts, Hernán Correa, Suman R. Das +4 more
2023The Journal of Pediatric Pharmacology and Therapeutics7 citations Open access
Semantic Scholar
THE RELATIONSHIP BETWEEN THE INTESTINAL MICROBIOME AND BODY MASS INDEX IN CHILDREN WITH CYSTIC FIBROSIS
Rachel Bernard, M. Shilts, B. Strickland, H. Boone +5 more
2023Journal of Cystic Fibrosis6 citations Open access
Semantic Scholar
Nearly Complete Genome Sequences of 17 Enterovirus D68 Strains from Kansas City, Missouri, 2018
S. Pakala, Yi Tan, F. Hassan, Annie Mai +5 more
2019Microbiology Resource Announcements6 citations Open access
Semantic Scholar
Mucosal Microbiome Disruption in Acute Laryngeal Injury Following Intubation.
Ruth J. Davis, M. Shilts, B. Strickland, Seesandra V. Rajagopala +3 more
2023Otolaryngology Head & Neck Surgery4 citations
Semantic Scholar
170: GASTROINTESTINAL MICROBIOTA DIVERSITY AND CLINICAL OUTCOMES IN CONGENITAL HEART DISEASE
S. Patterson, K. Davis, Rachel E. Klausner, J. Laws +4 more
2020Critical Care Medicine4 citations
Semantic Scholar
Idiopathic Subglottic Stenosis and the Epithelial Interface of Host and Environment
A. Gelbard, M. Shilts, Austin Hoke, B. Strickland +16 more
2025Journal of the American College of Surgeons3 citations Open access
Semantic Scholar
Mucosal gene expression in response to SARS-CoV-2 is associated with early viral load
Seesandra V. Rajagopala, B. Strickland, S. Pakala, K. Kimura +10 more
2022bioRxiv3 citations Open access
Semantic Scholar
The Gut Microbiome and Butyrate Differentiate Clostridioides difficile Colonization and Infection in Children
M. Nicholson, Si-Yuan Ma, B. Strickland, Mia Cecala +7 more
2025bioRxiv2 citations Open access
Semantic Scholar

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