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Takatomo Fujisawa · SciRah

Researcher profile · Semantic Scholar

Takatomo Fujisawa

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Takatomo Fujisawa — researcher profile on SciRah

h-index: 25
Works: 75
Citations: 4,726

Most-cited papers

DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
Yasuhiro Tanizawa, Takatomo Fujisawa, Yasukazu Nakamura
2017Bioinform.1,186 citations Open access
Semantic Scholar
The BioMart community portal: an innovative alternative to large, centralized data repositories
D. Smedley, S. Haider, S. Durinck, Luca Pandini +101 more
2015Nucleic Acids Res.729 citations Open access
Semantic Scholar
Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation
K. Hori, F. Maruyama, Takatomo Fujisawa, Tomoaki Togashi +46 more
2014Nature Communications565 citations Open access
Semantic Scholar
DFAST and DAGA: web-based integrated genome annotation tools and resources
Yasuhiro Tanizawa, Takatomo Fujisawa, E. Kaminuma, Yasukazu Nakamura +1 more
2016Bioscience of Microbiota Food and Health280 citations Open access
Semantic Scholar
CyanoBase: the cyanobacteria genome database update 2010
Mitsuteru Nakao, Shinobu Okamoto, M. Kohara, T. Fujishiro +5 more
2009Nucleic Acids Res.184 citations Open access
Semantic Scholar
BioMart Central Portal: an open database network for the biological community
J. Guberman, J. Ai, O. Arnaiz, J. Baran +57 more
2011Database J. Biol. Databases Curation161 citations Open access
Semantic Scholar
Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4.
M. Sekine, Satoshi Tanikawa, Seiha Omata, Mika Saito +13 more
2006Environmental Microbiology160 citations
Semantic Scholar
Genomic Structure of an Economically Important Cyanobacterium, Arthrospira (Spirulina) platensis NIES-39
Takatomo Fujisawa, R. Narikawa, Shinobu Okamoto, S. Ehira +19 more
2010DNA Research122 citations Open access
Semantic Scholar
DNA Data Bank of Japan
J. Mashima, Y. Kodama, Takatomo Fujisawa, Toshiaki Katayama +6 more
2016Nucleic Acids Res.118 citations Open access
Semantic Scholar
CyanoBase: a large-scale update on its 20th anniversary
Takatomo Fujisawa, R. Narikawa, S. Maeda, S. Watanabe +9 more
2016Nucleic Acids Res.103 citations Open access
Semantic Scholar
Complete Genome Sequence of the Soil Actinomycete Kocuria rhizophila
Hiromi Takarada, M. Sekine, H. Kosugi, Yasunori Matsuo +8 more
2008Journal of Bacteriology99 citations Open access
Semantic Scholar
Characterization of genes encoding multi-domain proteins in the genome of the filamentous nitrogen-fixing Cyanobacterium anabaena sp. strain PCC 7120.
Masayuki Ohmori, Masahiko Ikeuchi, Naoki Sato, Peter Wolk +14 more
2001DNA Research99 citations Open access
Semantic Scholar
DNA data bank of Japan (DDBJ) progress report
J. Mashima, Y. Kodama, T. Kosuge, Takatomo Fujisawa +8 more
2015Nucleic Acids Res.85 citations Open access
Semantic Scholar
The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data
Y. Kodama, J. Mashima, T. Kosuge, Toshiaki Katayama +6 more
2014Nucleic Acids Res.68 citations Open access
Semantic Scholar
Complete Genome Sequence of Bradyrhizobium sp. S23321: Insights into Symbiosis Evolution in Soil Oligotrophs
T. Okubo, Takahiro Tsukui, Hiroko Maita, Shinobu Okamoto +45 more
2012Microbes and Environments68 citations Open access
Semantic Scholar
CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes
Takatomo Fujisawa, Shinobu Okamoto, Toshiaki Katayama, Mitsuteru Nakao +9 more
2013Nucleic Acids Res.61 citations Open access
Semantic Scholar
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
Toshiaki Katayama, M. Wilkinson, K. Aoki-Kinoshita, Shuichi Kawashima +81 more
2014Journal of Biomedical Semantics58 citations Open access
Semantic Scholar
DDBJ update: streamlining submission and access of human data
Asami Fukuda, Y. Kodama, J. Mashima, Takatomo Fujisawa +1 more
2020Nucleic Acids Res.51 citations Open access
Semantic Scholar
DDBJ Database updates and computational infrastructure enhancement
O. Ogasawara, Y. Kodama, J. Mashima, T. Kosuge +1 more
2019Nucleic Acids Res.49 citations Open access
Semantic Scholar
DDBJ progress report: a new submission system for leading to a correct annotation
T. Kosuge, J. Mashima, Y. Kodama, Takatomo Fujisawa +5 more
2013Nucleic Acids Res.42 citations Open access
Semantic Scholar
DNA Data Bank of Japan (DDBJ) update report 2022
Yasuhiro Tanizawa, Takatomo Fujisawa, Y. Kodama, T. Kosuge +3 more
2022Nucleic Acids Res.35 citations Open access
Semantic Scholar
Loss of cytochrome cM stimulates cyanobacterial heterotrophic growth in the dark.
Yuto Hiraide, K. Oshima, Takatomo Fujisawa, Kazuma Uesaka +10 more
2015Plant and Cell Physiology35 citations Open access
Semantic Scholar
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation
Jerven T. Bolleman, C. Mungall, F. Strozzi, J. Baran +7 more
2014Journal of Biomedical Semantics34 citations Open access
Semantic Scholar
Use of segment-based microarray in the analysis of global gene expression in response to various environmental stresses in the cyanobacterium Anabaena sp. PCC 7120.
N. Sato, M. Ohmori, M. Ikeuchi, Kousuke Tashiro +15 more
2004Journal of General and Applied Microbiology30 citations Open access
Semantic Scholar
DFAST_QC: quality assessment and taxonomic identification tool for prokaryotic Genomes
Mohamed Elmanzalawi, Takatomo Fujisawa, Hiroshi Mori, Yasukazu Nakamura +1 more
2024bioRxiv27 citations Open access
Semantic Scholar
MarpolBase: genome database for Marchantia polymorpha featuring high quality reference genome sequences
Yasuhiro Tanizawa, T. Mochizuki, Masaru Yagura, M. Sakamoto +10 more
2025bioRxiv22 citations Open access
Semantic Scholar
Complete genome sequence of cyanobacterium Fischerella sp. NIES-3754, providing thermoresistant optogenetic tools.
Yuu Hirose, Takatomo Fujisawa, Y. Ohtsubo, Mitsunori Katayama +8 more
2016Journal of Biotechnology22 citations
Semantic Scholar
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, T. Kawashima +53 more
2011Journal of Biomedical Semantics21 citations Open access
Semantic Scholar
DDBJ update in 2023: the MetaboBank for metabolomics data and associated metadata
Takeshi Ara, Y. Kodama, Toshiaki Tokimatsu, Asami Fukuda +8 more
2023Nucleic Acids Research17 citations Open access
Semantic Scholar
Implementation of linked data in the life sciences at BioHackathon 2011
K. Aoki-Kinoshita, A. Kinjo, Mizuki Morita, Yoshinobu Igarashi +12 more
2015Journal of Biomedical Semantics17 citations Open access
Semantic Scholar
Complete Genome Sequence of Bifidobacterium longum 105-A, a Strain with High Transformation Efficiency
Y. Kanesaki, Hisayoshi Masutani, M. Sakanaka, Yuh Shiwa +6 more
2014Genome Announcements16 citations Open access
Semantic Scholar
Sapporo: A workflow execution service that encourages the reuse of workflows in various languages in bioinformatics
Hirotaka Suetake, Tomoya Tanjo, Manabu Ishii, Bruno P. Kinoshita +10 more
2022F1000Research13 citations Open access
Semantic Scholar
Complete genome sequence of cyanobacterium Nostoc sp. NIES-3756, a potentially useful strain for phytochrome-based bioengineering.
Yuu Hirose, Takatomo Fujisawa, Y. Ohtsubo, Mitsunori Katayama +8 more
2016Journal of Biotechnology13 citations Open access
Semantic Scholar
Genome sequence and overview of Oligoflexus tunisiensis Shr3T in the eighth class Oligoflexia of the phylum Proteobacteria
Ryosuke Nakai, Takatomo Fujisawa, Yasukazu Nakamura, T. Baba +6 more
2016Standards in Genomic Sciences12 citations Open access
Semantic Scholar
Complete Genome Sequence of Aurantimicrobium minutum Type Strain KNCT, a Planktonic Ultramicrobacterium Isolated from River Water
Ryosuke Nakai, Takatomo Fujisawa, Yasukazu Nakamura, Hiroyo Nishide +6 more
2016Genome Announcements12 citations Open access
Semantic Scholar
Draft Genome Sequence of Weissella oryzae SG25T, Isolated from Fermented Rice Grains
Yasuhiro Tanizawa, Takatomo Fujisawa, T. Mochizuki, E. Kaminuma +3 more
2014Genome Announcements12 citations Open access
Semantic Scholar
Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade
Yuu Hirose, Y. Ohtsubo, N. Misawa, Chinatsu Yonekawa +12 more
2021DNA Research10 citations Open access
Semantic Scholar
Generating Publication-Ready Prokaryotic Genome Annotations with DFAST.
Yasuhiro Tanizawa, Takatomo Fujisawa, M. Arita, Yasukazu Nakamura
2019Methods in molecular biology10 citations
Semantic Scholar
DDBJ update in 2024: the DDBJ Group Cloud service for sharing pre-publication data
Y. Kodama, Takeshi Ara, Asami Fukuda, Toshiaki Tokimatsu +8 more
2024Nucleic Acids Research9 citations Open access
Semantic Scholar
DNA Data Bank of Japan (DDBJ) update report 2021
T. Okido, Y. Kodama, J. Mashima, T. Kosuge +2 more
2021Nucleic Acids Res.9 citations Open access
Semantic Scholar
Complete sequence and structure of the genome of the harmful algal bloom-forming cyanobacterium Planktothrix agardhii NIES-204T and detailed analysis of secondary metabolite gene clusters.
Yohei Shimura, Takatomo Fujisawa, Yuu Hirose, N. Misawa +3 more
2020Harmful Algae9 citations
Semantic Scholar
Complete Genome Sequence of Cyanobacterium Leptolyngbya sp. NIES-3755
Yuu Hirose, Takatomo Fujisawa, Y. Ohtsubo, Mitsunori Katayama +8 more
2016Genome Announcements9 citations Open access
Semantic Scholar
TogoGenome/TogoStanza: modularized Semantic Web genome database
Toshiaki Katayama, Shuichi Kawashima, Shinobu Okamoto, Yuki Moriya +5 more
2019Database8 citations Open access
Semantic Scholar
Draft Genome Sequence of the Nitrogen-Fixing and Hormogonia-Inducing Cyanobacterium Nostoc cycadae Strain WK-1, Isolated from the Coralloid Roots of Cycas revoluta
Y. Kanesaki, Masaki Hirose, Yuu Hirose, Takatomo Fujisawa +5 more
2018Genome Announcements7 citations Open access
Semantic Scholar
DDBJ update in 2025: system integration for global data-sharing including pathogen surveillance
Takeshi Ara, Y. Kodama, Takatomo Fujisawa, T. Kosuge +7 more
2025Nucleic Acids Research5 citations Open access
Semantic Scholar
BioHackathon 2015: Semantics of data for life sciences and reproducible research
R. Vos, Toshiaki Katayama, H. Mishima, S. Kawano +73 more
2020F1000Research5 citations Open access
Semantic Scholar
Complete Genome Sequence of a Coastal Cyanobacterium, Synechococcus sp. Strain NIES-970
Yohei Shimura, Yuu Hirose, N. Misawa, S. Wakazuki +5 more
2017Genome Announcements5 citations Open access
Semantic Scholar
H2DB: a heritability database across multiple species by annotating trait-associated genomic loci
E. Kaminuma, Takatomo Fujisawa, Yasuhiro Tanizawa, Naoko Sakamoto +3 more
2012Nucleic Acids Res.5 citations Open access
Semantic Scholar
Biochemical Properties of a cAMP Phosphodiesterase in the Cyanobacterium Anabaena sp. strain PCC 7120
Takatomo Fujisawa, M. Ohmori
20055 citations Open access
Semantic Scholar
TogoMCP: natural language querying of life-science knowledge graphs via schema-guided LLMs and the Model Context Protocol
Akira R. Kinjo, Yasunori Yamamoto, Samuel Bustamante-Larriet, J. Labra-Gayo +1 more
2026bioRxiv4 citations Open access
Semantic Scholar

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