Researcher profile · Semantic Scholar

J. Baran

h-index: 9
Works: 22
Citations: 858

Most-cited papers

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery
M. Dumontier, Christopher J. O. Baker, J. Baran, Alison Callahan +13 more
2014Journal of Biomedical Semantics238 citations Open access
Semantic Scholar
WormBase 2014: new views of curated biology
T. Harris, J. Baran, Tamberlyn A. Bieri, Abigail Cabunoc +29 more
2013Nucleic Acids Res.170 citations Open access
Semantic Scholar
BioMart Central Portal: an open database network for the biological community
J. Guberman, J. Ai, O. Arnaiz, J. Baran +57 more
2011Database J. Biol. Databases Curation161 citations Open access
Semantic Scholar
BioMart: a data federation framework for large collaborative projects
Junjun Zhang, S. Haider, J. Baran, A. Cros +5 more
2011Database J. Biol. Databases Curation94 citations Open access
Semantic Scholar
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
Toshiaki Katayama, M. Wilkinson, K. Aoki-Kinoshita, Shuichi Kawashima +81 more
2014Journal of Biomedical Semantics58 citations Open access
Semantic Scholar
pubmed2ensembl: A Resource for Mining the Biological Literature on Genes
J. Baran, Martin Gerner, M. Haeussler, G. Nenadic +1 more
2011PLoS ONE46 citations Open access
Semantic Scholar
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation
Jerven T. Bolleman, C. Mungall, F. Strozzi, J. Baran +7 more
2014Journal of Biomedical Semantics34 citations Open access
Semantic Scholar
The health care and life sciences community profile for dataset descriptions
M. Dumontier, A. Gray, M. S. Marshall, Vladimir Alexiev +26 more
2016PeerJ26 citations Open access
Semantic Scholar
Dataset Descriptions: HCLS Community Profile
A. Gray, J. Baran, M. S. Marshall, M. Dumontier +27 more
201518 citations
Semantic Scholar
Distributed under Creative Commons Cc-by 4.0 Gfvo: the Genomic Feature and Variation Ontology
J. Baran, Bibi Sehnaaz, Begum Durgahee, K. Eilbeck +3 more
8 citations
Semantic Scholar
Forays into Sequential Composition and Concatenation in Eagle
J. Baran, H. Barringer
2008Runtime Verification4 citations
Semantic Scholar
A Grammatical Representation of Visibly Pushdown Languages
J. Baran, H. Barringer
2007Workshop on Logic, Language, Information and Computation2 citations
Semantic Scholar
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services
Toshiaki Katayama, Shuichi Kawashima, G. Micklem, S. Kawano +72 more
2019F1000Research0 citations Open access
Semantic Scholar
seqware: 1.1.0-rc.1
Denis Yuen, R. Suri, Brian D. O'Connor, Maksym Max Pikhteryev +11 more
20150 citations
Semantic Scholar
seqware: 1.1.2
Denis Yuen, Brian D. O'Connor, Yl, Morgan L. Taschuk +12 more
20150 citations
Semantic Scholar
Biogems: Challenges in distributed software development in bioinformatics
G. Githinji, P. Prins, B. Woodcroft, R. Bonnal +5 more
20150 citations Open access
Semantic Scholar
seqware: 1.2.0-alpha.0
Denis Yuen, R. Suri, Brian D. O'Connor, Maksym Max Pikhteryev +12 more
20150 citations
Semantic Scholar
SeqWare 1.0.17
Denis Yuen, Brian D. O'Connor, Yl, Morgan L. Taschuk +9 more
20140 citations
Semantic Scholar
pubmed2ensembl: Linking Publications and Genes
G. Nenadic, J. Baran, Martin Gerner, M. Haeussler +1 more
20100 citations
Semantic Scholar
Handling concatenation in trace- and model-checking
J. Baran
20090 citations
Semantic Scholar
Crystal structure of the pantheonate kinase-like protein Q6M145 at the resolution 1.8 A. Northeast Structural Genomics Consortium target MrR63
A. Kuzin, M. Su, J. Seetharaman, F. Forouhar +12 more
20080 citations
Semantic Scholar
A Grammatical Characterisation of Visibly Pushdown Languages
J. Baran, H. Barringer
20070 citations
Semantic Scholar

Atsuko Yamaguchi

×4

Jerven T. Bolleman×4

Maori Ito×4

F. Strozzi×4

Denis Yuen×4

R. Suri×4

Brian D. O'Connor×4

Maksym Max Pikhteryev×4