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Shinobu Okamoto · SciRah

Researcher profile · Semantic Scholar

Shinobu Okamoto

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Shinobu Okamoto — researcher profile on SciRah

h-index: 20
Works: 46
Citations: 1,667

Most-cited papers

Complete Genomic Structure of the Bloom-forming Toxic Cyanobacterium Microcystis aeruginosa NIES-843
T. Kaneko, N. Nakajima, Shinobu Okamoto, I. Suzuki +19 more
2008DNA Research287 citations Open access
Semantic Scholar
Mutational analysis of genes involved in pilus structure, motility and transformation competency in the unicellular motile cyanobacterium Synechocystis sp. PCC 6803.
Shizue Yoshihara, Xiao-Xing Geng, Shinobu Okamoto, K. Yura +4 more
2001Plant and Cell Physiology198 citations
Semantic Scholar
CyanoBase: the cyanobacteria genome database update 2010
Mitsuteru Nakao, Shinobu Okamoto, M. Kohara, T. Fujishiro +5 more
2009Nucleic Acids Res.184 citations Open access
Semantic Scholar
Genomic Structure of an Economically Important Cyanobacterium, Arthrospira (Spirulina) platensis NIES-39
Takatomo Fujisawa, R. Narikawa, Shinobu Okamoto, S. Ehira +19 more
2010DNA Research122 citations Open access
Semantic Scholar
Characterization of genes encoding multi-domain proteins in the genome of the filamentous nitrogen-fixing Cyanobacterium anabaena sp. strain PCC 7120.
Masayuki Ohmori, Masahiko Ikeuchi, Naoki Sato, Peter Wolk +14 more
2001DNA Research99 citations Open access
Semantic Scholar
Group 3 sigma factor gene, sigJ, a key regulator of desiccation tolerance, regulates the synthesis of extracellular polysaccharide in cyanobacterium Anabaena sp. strain PCC 7120
H. Yoshimura, Shinobu Okamoto, Y. Tsumuraya, M. Ohmori
2007DNA Research69 citations Open access
Semantic Scholar
Complete Genome Sequence of Bradyrhizobium sp. S23321: Insights into Symbiosis Evolution in Soil Oligotrophs
T. Okubo, Takahiro Tsukui, Hiroko Maita, Shinobu Okamoto +45 more
2012Microbes and Environments68 citations Open access
Semantic Scholar
The cyanobacterial PilT protein responsible for cell motility and transformation hydrolyzes ATP.
Shinobu Okamoto, M. Ohmori
2002Plant and Cell Physiology67 citations
Semantic Scholar
CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes
Takatomo Fujisawa, Shinobu Okamoto, Toshiaki Katayama, Mitsuteru Nakao +9 more
2013Nucleic Acids Res.61 citations Open access
Semantic Scholar
Photoresponsive cAMP signal transduction in cyanobacteria
M. Ohmori, Shinobu Okamoto
2004Photochemical and Photobiological Sciences61 citations
Semantic Scholar
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
Toshiaki Katayama, M. Wilkinson, K. Aoki-Kinoshita, Shuichi Kawashima +81 more
2014Journal of Biomedical Semantics58 citations Open access
Semantic Scholar
A cAMP receptor protein, SYCRP1, is responsible for the cell motility of Synechocystis sp. PCC 6803.
H. Yoshimura, Shizue Yoshihara, Shinobu Okamoto, M. Ikeuchi +1 more
2002Plant and Cell Physiology56 citations Open access
Semantic Scholar
Experimental analysis of recently transposed insertion sequences in the cyanobacterium Synechocystis sp. PCC 6803.
Shinobu Okamoto, M. Ikeuchi, M. Ohmori
1999DNA Research37 citations Open access
Semantic Scholar
Loss of cytochrome cM stimulates cyanobacterial heterotrophic growth in the dark.
Yuto Hiraide, K. Oshima, Takatomo Fujisawa, Kazuma Uesaka +10 more
2015Plant and Cell Physiology35 citations Open access
Semantic Scholar
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
Toshiaki Katayama, Mark D. Wilkinson, G. Micklem, Shuichi Kawashima +62 more
2013Journal of Biomedical Semantics31 citations Open access
Semantic Scholar
A Phytochrome-like Protein AphC Triggers the cAMP Signaling Induced by Far-red Light in the Cyanobacterium Anabaena sp. Strain PCC7120¶
Shinobu Okamoto, M. Kasahara, A. Kamiya, Yuka Nakahira +1 more
2004Photochemistry and Photobiology31 citations
Semantic Scholar
Use of segment-based microarray in the analysis of global gene expression in response to various environmental stresses in the cyanobacterium Anabaena sp. PCC 7120.
N. Sato, M. Ohmori, M. Ikeuchi, Kousuke Tashiro +15 more
2004Journal of General and Applied Microbiology30 citations Open access
Semantic Scholar
Molecular evolution of PAS domain-containing proteins of filamentous cyanobacteria through domain shuffling and domain duplication.
R. Narikawa, Shinobu Okamoto, M. Ikeuchi, M. Ohmori
2004DNA Research25 citations Open access
Semantic Scholar
The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications
Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, T. Kawashima +53 more
2011Journal of Biomedical Semantics21 citations Open access
Semantic Scholar
Regulation of cAMP‐mediated Photosignaling by a Phytochrome in the Cyanobacterium Anabaena cylindrica ¶
M. Ohmori, K. Terauchi, Shinobu Okamoto, Masakatu Watanabe
2002Photochemistry and Photobiology21 citations Open access
Semantic Scholar
Implementation of linked data in the life sciences at BioHackathon 2011
K. Aoki-Kinoshita, A. Kinjo, Mizuki Morita, Yoshinobu Igarashi +12 more
2015Journal of Biomedical Semantics17 citations Open access
Semantic Scholar
TogoID: an exploratory ID converter to bridge biological datasets
Shuya Ikeda, Hiromasa ONO, T. Ohta, Hirokazu Chiba +7 more
2022Bioinform.16 citations Open access
Semantic Scholar
Identification of endocrine disruptor biodegradation by integration of structure-activity relationship with pathway analysis.
T. Kadowaki, C. Wheelock, T. Adachi, Taku Kudo +7 more
2007Environmental Science and Technology14 citations
Semantic Scholar
Regulation of cAMP-mediated Photosignaling by a Phytochrome in the Cyanobacterium Anabaena cylindrica¶
M. Ohmori, K. Terauchi, Shinobu Okamoto, Masakatu Watanabe
200213 citations
Semantic Scholar
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*
Toshiaki Katayama, K. Arakawa, Mitsuteru Nakao, K. Ono +53 more
2010Journal of Biomedical Semantics10 citations Open access
Semantic Scholar
TogoGenome/TogoStanza: modularized Semantic Web genome database
Toshiaki Katayama, Shuichi Kawashima, Shinobu Okamoto, Yuki Moriya +5 more
2019Database8 citations Open access
Semantic Scholar
Prediction of nitrogen metabolism‐related genes in Anabaena by kernel‐based network analysis
Shinobu Okamoto, Yoshihiro Yamanishi, S. Ehira, Shuichi Kawashima +2 more
2007Proteomics8 citations
Semantic Scholar
PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB enzyme list
Masaaki Kotera, Y. Nishimura, Zenichi Nakagawa, Ai Muto +7 more
2014J. Bioinform. Comput. Biol.7 citations Open access
Semantic Scholar
ANALYSIS OF CYANOBACTERIAL MOTILITY IN SYNECHOCYSTIS SP. STRAIN PCC6803.
Shinobu Okamoto, M. Ohmori
19996 citations
Semantic Scholar
Comprehensive Analysis of Tandem Repeat Sequences in Cyanobacteria Genome
Toshiaki Katayama, Shinobu Okamoto, R. Narikawa, Takatomo Fujisawa +4 more
20024 citations
Semantic Scholar
A Phytochrome‐like Protein AphC Triggers the cAMP Signaling Induced by Far‐red Light in the Cyanobacterium Anabaena sp. Strain PCC7120 ¶
Shinobu Okamoto, M. Kasahara, Asako Kamlya, Yuka Nakahira +1 more
20041 citations
Semantic Scholar
Newly Identified Motifs within PAS Domains of Filamentous Cyanobacteria
R. Narikawa, Shinobu Okamoto, M. Ikeuchi, M. Ohmori
20031 citations
Semantic Scholar
MUTATIONAL ANALYSIS OF GENES INVOLVED IN MOTILITY AND TRANSFORMATION OF Synechocystis sp. PCC 6803
Shizue Yoshihara, Xiao-Xing Geng, Shinobu Okamoto, K. Yura +3 more
20001 citations
Semantic Scholar
Biochemical characterization of PiIT which is responsible for cell motility and transformation in Synechocystis sp. PCC6803.
Shinobu Okamoto, M. Ohmori
20001 citations
Semantic Scholar
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services
Toshiaki Katayama, Shuichi Kawashima, G. Micklem, S. Kawano +72 more
2019F1000Research0 citations Open access
Semantic Scholar
Integrated Growth Media Database by Standardizing Ingredient Information
Shuichi Kawashima, Toshiaki Katayama, Yuki Moriya, Shinobu Okamoto +2 more
2019SWAT4HCLS0 citations
Semantic Scholar
Text2LOD: building high-quality linked open annotation data concerning biological interests
Yasunori Yamamoto, Shinobu Okamoto, Shuichi Kawashima, Toshiaki Katayama +3 more
20160 citations Open access
Semantic Scholar
The 3rd DBCLS BioHackathon : Improving life science with semantic web technologies
Toshiaki Katayama, M. Wilkinson, G. Micklem, Shuichi Kawashima +62 more
20130 citations
Semantic Scholar
Semantic Integration of the Genome Annotations
Toshiaki Katayama, Shinobu Okamoto, Shuichi Kawashima, Hiroshi Mori +1 more
2012Workshop on Semantic Web Applications and Tools for Life Sciences0 citations
Semantic Scholar
From Function Prediction to Pathway Prediction : A New Pipeline Based on KAAS and GENIES
Yuki Moriya, Yoshihiro Yamanishi, M. Itoh, Shinobu Okamoto +1 more
20060 citations
Semantic Scholar
Chemical Genomic Study of Endocrine Disrupting Chemicals in Metabolic Pathways
T. Kadowaki, T. Adachi, Shinobu Okamoto, Nobuya Tanaka +3 more
20050 citations
Semantic Scholar
Correlation between signal transduction domains and habitats in cyanobacteria
Shinobu Okamoto, Shuichi Kawashima, M. Kanehisa
20040 citations
Semantic Scholar
Genome-wide distribution of bilin-binding GAF domains
Shinobu Okamoto, M. Ohmori
20040 citations
Semantic Scholar
3D homology Modeling Based on Genome Sequence
M. Ohmori, Shinobu Okamoto, Takatomo Fujisawa
20010 citations
Semantic Scholar
cAMP-BLUE LIGHT SIGNAL TRANSDUCTION SYSTEM IN THE CYANOBACTERIUM Synechocystis sp. PCC 6803 REGULATES CELL MOTILITY
K. Terauchi, Shinobu Okamoto, M. Ohmori
19990 citations
Semantic Scholar
Functional Classification of Coiled-Coil Proteins in Multiple Genomes
A. Yoshizawa, S. Okuda, Yuki Moriya, M. Itoh +5 more
0 citations
Semantic Scholar

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M. Ohmori×20
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M. Ohmori — researcher profile on SciRah
Takatomo Fujisawa×15
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Takatomo Fujisawa — researcher profile on SciRah
Shuichi Kawashima×15
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Toshiaki Katayama×13
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Mitsuteru Nakao

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H. Yoshimura×6

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Yasunori Yamamoto×6

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Atsuko Yamaguchi×6

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