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C. Epstein · SciRah

Researcher profile · Semantic Scholar

C. Epstein

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C. Epstein — researcher profile on SciRah

h-index: 30
Works: 54
Citations: 18K

Most-cited papers

Integrative analysis of 111 reference human epigenomes
A. Kundaje, W. Meuleman, J. Ernst, M. Bilenky +91 more
2015Nature6,166 citations Open access
Semantic Scholar
Expanded encyclopaedias of DNA elements in the human and mouse genomes
Jill E. Moore, M. Purcaro, Henry E. Pratt, C. Epstein +59 more
2020Nature2,079 citations Open access
Semantic Scholar
Genetic and Epigenetic Fine-Mapping of Causal Autoimmune Disease Variants
K. Farh, A. Marson, Jiang Zhu, M. Kleinewietfeld +17 more
2014Nature1,854 citations Open access
Semantic Scholar
A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
B. Bernstein, C. Epstein, N. Shoresh, Jesse A. Ernst +13 more
2011PLoS Biology1,039 citations Open access
Semantic Scholar
Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci
G. Srivastava, K. Lunnon, J. Burgess, Lei Yu +25 more
2014598 citations
Semantic Scholar
Genome-wide enhancer maps link risk variants to disease genes
Joseph Nasser, Drew T. Bergman, Charles P. Fulco, Philine Guckelberger +28 more
2021Nature569 citations Open access
Semantic Scholar
Genome-wide chromatin state transitions associated with developmental and environmental cues
Jiang Zhu, Mazhar Adli, J. Zou, Griet Verstappen +16 more
2013Cell548 citations Open access
Semantic Scholar
DNA sequence-dependent compartmentalization and silencing of chromatin at the nuclear lamina.
J. Zullo, Ignacio A. Demarco, R. Pique-Regi, D. Gaffney +7 more
2012Cell452 citations Open access
Semantic Scholar
Transcriptional and Epigenetic Dynamics During Specification of Human Embryonic Stem Cells
C. Gifford, Michael J. Ziller, H. Gu, C. Trapnell +20 more
2013Cell442 citations Open access
Semantic Scholar
A Genetic Variant Associated with Five Vascular Diseases Is a Distal Regulator of Endothelin-1 Gene Expression
Rajat M. Gupta, J. Hadaya, Aditi Trehan, S. Zekavat +17 more
2017Cell421 citations Open access
Semantic Scholar
CLB5: a novel B cyclin from budding yeast with a role in S phase.
C. Epstein, F. Cross
1992Genes & Development411 citations Open access
Semantic Scholar
Genomic Distribution and Inter-Sample Variation of Non-CpG Methylation across Human Cell Types
Michael J. Ziller, F. Müller, Jing Liao, Yingying Zhang +8 more
2011PLoS Genetics408 citations Open access
Semantic Scholar
Genome-wide responses to mitochondrial dysfunction.
C. Epstein, J. A. Waddle, W. Hale, Varshal K. Davé +4 more
2001Molecular Biology of the Cell400 citations Open access
Semantic Scholar
Recommendations for the design and analysis of epigenome-wide association studies
K. Michels, Alexandra M. Binder, S. Dedeurwaerder, C. Epstein +10 more
2013Nature Methods384 citations
Semantic Scholar
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
Oren Ram, Alon Goren, I. Amit, N. Shoresh +12 more
2011Cell359 citations Open access
Semantic Scholar
Dissecting neural differentiation regulatory networks through epigenetic footprinting
Michael J. Ziller, Reuven Edri, Yakey Yaffe, Julie Donaghey +17 more
2014Nature188 citations Open access
Semantic Scholar
Enhancer signatures stratify and predict outcomes of non-functional pancreatic neuroendocrine tumors
P. Cejas, Y. Drier, K. Dreijerink, L. Brosens +23 more
2019Nature Medicine157 citations Open access
Semantic Scholar
Exposure of iPSC-derived human microglia to brain substrates enables the generation and manipulation of diverse transcriptional states in vitro
Michael-John Dolan, Martine Therrien, Saša Jereb, Tushar Kamath +20 more
2023Nature Immunology134 citations Open access
Semantic Scholar
Global transcription analysis of Krebs tricarboxylic acid cycle mutants reveals an alternating pattern of gene expression and effects on hypoxic and oxidative genes.
M. Mccammon, C. Epstein, B. Przybyla-Zawislak, L. McAlister-Henn +1 more
2003Molecular Biology of the Cell126 citations Open access
Semantic Scholar
RTG‐dependent mitochondria to nucleus signaling is negatively regulated by the seven WD‐repeat protein Lst8p
Zheng-Chang Liu, T. Sekito, C. Epstein, R. Butow
2001EMBO Journal115 citations Open access
Semantic Scholar
Detection of Enhancer-Associated Rearrangements Reveals Mechanisms of Oncogene Dysregulation in B-cell Lymphoma
Russell J. H. Ryan, Y. Drier, Holly J. Whitton, M. J. Cotton +8 more
2015Cancer Discovery109 citations Open access
Semantic Scholar
The Spectrum of Mutations at the p53 Locus
A. Levine, Michael C. Wu, A. Chang, A. Silver +3 more
1995Annals of the New York Academy of Sciences107 citations
Semantic Scholar
A Genetic Approach to Mapping the p53 Binding Site in the MDM2 Protein
D. Freedman, C. Epstein, J. Roth, A. Levine
1997Molecular Medicine105 citations Open access
Semantic Scholar
Genes that can bypass the CLN requirement for Saccharomyces cerevisiae cell cycle START
C. Epstein, F. Cross
1994Molecular and Cellular Biology100 citations Open access
Semantic Scholar
PTK6 Regulates IGF-1-Induced Anchorage-Independent Survival
Hanna Y. Irie, Y. Shrestha, L. Selfors, F. Frye +12 more
2010PLoS ONE82 citations Open access
Semantic Scholar
Impact of sequencing depth in ChIP-seq experiments
Y. L. Jung, Lovelace J. Luquette, J. Ho, F. Ferrari +7 more
2014Nucleic Acids Research79 citations Open access
Semantic Scholar
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
J. Rozowsky, Jia-Hao Gao, Beatrice Borsari, Yucheng T. Yang +99 more
2022bioRxiv76 citations Open access
Semantic Scholar
Identification of nuclear hormone receptor pathways causing insulin resistance by transcriptional and epigenomic analysis
Sona Kang, L. Tsai, Yi-Ming Zhou, Adam G. Evertts +8 more
2014Nature Cell Biology68 citations Open access
Semantic Scholar
Systematic comparison of monoclonal versus polyclonal antibodies for mapping histone modifications by ChIP-seq
Michele Busby, C. Xue, Catherine Li, Y. Farjoun +8 more
2016bioRxiv39 citations Open access
Semantic Scholar
p53 mutations isolated in yeast based on loss of transcription factor activity: similarities and differences from p53 mutations detected in human tumors
C. Epstein, E. Attiyeh, David A Hobson, A. Silver +2 more
1998Oncogene38 citations Open access
Semantic Scholar
Detecting sample swaps in diverse NGS data types using linkage disequilibrium
Nauman Javed, Y. Farjoun, T. Fennell, C. Epstein +2 more
2020Nature Communications31 citations Open access
Semantic Scholar
Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes
Jill E. Moore, M. Purcaro, Henry E. Pratt, C. Epstein +59 more
2022Nature23 citations Open access
Semantic Scholar
Numerical methods for handling uncertainty in microarray data: an example analyzing perturbed mitochondrial function in yeast.
C. Epstein, W. Hale, R. Butow
2001Methods in Cell Biology20 citations
Semantic Scholar
SIT4 regulation of Mig1p‐mediated catabolite repression in Saccharomyces cerevisiae
C. Jin, A. Barrientos, C. Epstein, R. Butow +1 more
2007FEBS Letters18 citations Open access
Semantic Scholar
The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles
Jacob Schreiber, C. Boix, Jin Wook Lee, Hongyang Li +38 more
2023Genome Biology17 citations Open access
Semantic Scholar
Single-cell multi-scale footprinting reveals the modular organization of DNA regulatory elements
Yan Hu, Sai Ma, Vinay K. Kartha, Fabiana M. Duarte +16 more
2023bioRxiv17 citations Open access
Semantic Scholar
Genome-wide maps of enhancer regulation connect risk variants to disease genes
Joseph Nasser, Drew T. Bergman, Charles P. Fulco, Philine Guckelberger +26 more
2020bioRxiv14 citations Open access
Semantic Scholar
MAD: a suite of tools for microarray data management and processing
Bi-Rong Liao, W. Hale, C. Epstein, R. Butow +1 more
2000Bioinform.12 citations Open access
Semantic Scholar
Epigenetic alterations in keratinocyte carcinoma
Qiuming Yao, C. Epstein, Samridhi Banskota, Robbyn Issner +4 more
2020Journal of Investigative Dermatology10 citations Open access
Semantic Scholar
A resource for generating and manipulating human microglial states in vitro
Michael-John Dolan, Martine Therrien, Saša Jereb, Tushar Kamath +19 more
2022bioRxiv9 citations Open access
Semantic Scholar
Publisher Correction: Enhancer signatures stratify and predict outcomes of non-functional pancreatic neuroendocrine tumors
P. Cejas, Y. Drier, K. Dreijerink, L. Brosens +23 more
2019Nature Medicine4 citations Open access
Semantic Scholar
An Empirical Bayesian Significance Test of cDNA Library Data
Nan-Xiang Ge, C. Epstein
2004J. Comput. Biol.4 citations
Semantic Scholar
Mapping of the Multiple Myeloma Transcriptional Core Regulatory Circuitry Reveals TCF3 As a Novel Dependency and an Oncogenic Collaborator of MYC
Charles Y. Lin, M. Fulciniti, Michael A. Lopez, M. Samur +7 more
20173 citations
Semantic Scholar
Identification of partial loss of function p53 gene mutations utilizing a yeast-based functional assay.
Gopala K. Kovvali, Bena Mehta, C. Epstein, S. Lutzker
2001Nucleic Acids Research3 citations Open access
Semantic Scholar
An Autoimmune Transcriptional Circuit Driving Foxp3+ Regulatory T cell Dysfunction
T. Sumida, M. Lincoln, Liang He, Yongjin P. Park +9 more
2022bioRxiv2 citations Open access
Semantic Scholar
A Genetic and Molecular Analysis of the Control of the Start of the Cell Cycle in Saccharomyces cerevisiae
C. Epstein
19922 citations
Semantic Scholar
Chromatin Accessibility Profiling Reveals Cis-Regulatory Heterogeneity and Novel Transcription Factor Dependencies in Multiple Myeloma
C. Ott, R. Szalat, Matthew A. Lawlor, M. Samur +15 more
2018Blood1 citations Open access
Semantic Scholar
Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles
Jacob Schreiber, C. Boix, Jin Wook Lee, Hong-Yang Li +38 more
2025Genome Biology0 citations Open access
Semantic Scholar
Endocrine Surgery Review Enhancer Signatures Stratify and Predict Outcomes of Non-functional Pancreatic Neuroendocrine Tumors
P. Cejas, Y. Drier, K. Dreijerink, A. LodewijkA. +29 more
20200 citations
Semantic Scholar
Genome wide chromatin accessibility profiling identifies chromatin signatures and novel transcription factor dependencies in multiple myeloma
R. Szalat, Matthew A. Lawlor, M. Fulciniti, C. Epstein +16 more
2019Clinical Lymphoma, Myeloma & Leukemia0 citations
Semantic Scholar

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