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Julie Donaghey · SciRah

Researcher profile · Semantic Scholar

Julie Donaghey

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Julie Donaghey — researcher profile on SciRah

h-index: 14
Works: 22
Citations: 6,853

Most-cited papers

Improving RNA-Seq expression estimates by correcting for fragment bias
Adam Roberts, C. Trapnell, Julie Donaghey, J. Rinn +1 more
2011Genome Biology1,648 citations Open access
Semantic Scholar
Charting a dynamic DNA methylation landscape of the human genome
Michael J. Ziller, H. Gu, F. Müller, Julie Donaghey +8 more
2013Nature1,328 citations Open access
Semantic Scholar
Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs
M. Guttman, M. Garber, J. Levin, Julie Donaghey +9 more
2010Nature Biotechnology1,265 citations Open access
Semantic Scholar
Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells
Jing Liao, R. Karnik, H. Gu, Michael J. Ziller +14 more
2015Nature Genetics459 citations Open access
Semantic Scholar
Transcriptional and Epigenetic Dynamics During Specification of Human Embryonic Stem Cells
C. Gifford, Michael J. Ziller, H. Gu, C. Trapnell +20 more
2013Cell442 citations Open access
Semantic Scholar
Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells
Oren Ram, Alon Goren, I. Amit, N. Shoresh +12 more
2011Cell359 citations Open access
Semantic Scholar
Transcription factor binding dynamics during human ESC differentiation
Alexander M. Tsankov, H. Gu, V. Akopian, Michael J. Ziller +4 more
2015Nature247 citations Open access
Semantic Scholar
Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency
D. Cacchiarelli, C. Trapnell, Michael J. Ziller, M. Soumillon +16 more
2015Cell223 citations Open access
Semantic Scholar
Dissecting neural differentiation regulatory networks through epigenetic footprinting
Michael J. Ziller, Reuven Edri, Yakey Yaffe, Julie Donaghey +17 more
2014Nature188 citations Open access
Semantic Scholar
Circadian Entrainment Triggers Maturation of Human In Vitro Islets.
J. Alvarez-Dominguez, Julie Donaghey, Niloofar Rasouli, Jennifer H. R. Kenty +5 more
2019Cell Stem Cell167 citations Open access
Semantic Scholar
Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer
Zachary D. Smith, Jian-Tao Shi, H. Gu, Julie Donaghey +5 more
2017Nature162 citations Open access
Semantic Scholar
Genetic determinants and epigenetic effects of pioneer factor occupancy
Julie Donaghey, S. Thakurela, J. Charlton, Jenny Chen +13 more
2018Nature Genetics157 citations Open access
Semantic Scholar
Genome-wide tracking of dCas9-methyltransferase footprints
Christina Galonska, J. Charlton, Alexandra L. Mattei, Julie Donaghey +12 more
2018Nature Communications139 citations Open access
Semantic Scholar
Deregulated Protein Kinase A Signaling and Myospryn Expression in Muscular Dystrophy*
Joseph G. Reynolds, Sarah A. Mccalmon, Julie Donaghey, F. Naya
2008Journal of Biological Chemistry65 citations Open access
Semantic Scholar
Dissecting mechanisms of human islet differentiation and maturation through epigenome profiling
J. Alvarez-Dominguez, Julie Donaghey, Jennifer H. R. Kenty, Niloofar Rasouli +5 more
2019bioRxiv2 citations Open access
Semantic Scholar
Abstract 2190: Engineering off-the-shelf T cell receptor fusion construct (TRuC) T cells
Julie Donaghey, P. Kieffer-Kwon, T. Patterson, Tiffany T. Chan +5 more
2020Immunology1 citations
Semantic Scholar
Abstract 6072: Characterization of the immunological responses in a mouse model expressing humanized FcγR/FcRn
Angela Pappalardo, Julie Donaghey, Danielle N. Huggins, Patrick Kirby +3 more
2026Cancer Research0 citations
Semantic Scholar
OR31-05 Specific and Deep Depletion of anti-TSHR Autoantibodies for the Treatment of Graves’ and Thyroid Eye Disease
D. Gutierrez, M. Logtenberg, Larry L. Schweitzer, Allan Capili +7 more
2025Journal of the Endocrine Society0 citations Open access
Semantic Scholar
Abstract 557: Engineering off-the-shelf anti mesothelin t-cell receptor fusion construct (TRuC™) t-cells
Julie Donaghey, Cecilia Kwong, A. Powell, T. Patterson +11 more
2022Cancer Research0 citations
Semantic Scholar
Abstract 1514: Engineering off-the-shelf T Cell Receptor Fusion Construct (TRuC) T cells
Julie Donaghey, P. Kieffer-Kwon, J. Gómez-Rodríguez, T. Patterson +8 more
2021Immunology0 citations
Semantic Scholar
Organoid Maturation by Circadian Entrainment
J. Alvarez-Dominguez, Julie Donaghey, Niloofar Rasouli, Jennifer H. R. Kenty +5 more
2020StemJournal0 citations Open access
Semantic Scholar

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