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Y. Farjoun · SciRah

Researcher profile · Semantic Scholar

Y. Farjoun

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Y. Farjoun — researcher profile on SciRah

h-index: 21
Works: 68
Citations: 16K

Most-cited papers

The mutational constraint spectrum quantified from variation in 141,456 humans
K. Karczewski, L. Francioli, Grace Tiao, B. Cummings +62 more
2020Nature8,787 citations Open access
Semantic Scholar
A genomic mutational constraint map using variation in 76,156 human genomes
Si-Wei Chen, L. Francioli, J. Goodrich, Ryan L. Collins +42 more
2023Nature1,415 citations Open access
Semantic Scholar
Variation across 141,456 human exomes and genomes reveals the spectrum of loss-of-function intolerance across human protein-coding genes
K. Karczewski, L. Francioli, Grace Tiao, B. Cummings +61 more
2019bioRxiv1,094 citations Open access
Semantic Scholar
The genetic architecture of type 2 diabetes
C. Fuchsberger, J. Flannick, T. Teslovich, A. Mahajan +297 more
2016Nature1,074 citations Open access
Semantic Scholar
A structural variation reference for medical and population genetics
Ryan L. Collins, H. Brand, K. Karczewski, Xue-Fang Zhao +180 more
2020Nature932 citations Open access
Semantic Scholar
Genomic atlas of the plasma metabolome prioritizes metabolites implicated in human diseases
Yiheng Chen, Tian-Yuan Lu, Ulrika Pettersson-Kymmer, I. Stewart +15 more
2023Nature Genetics904 citations Open access
Semantic Scholar
Loss-of-function mutations in SLC30A8 protect against type 2 diabetes
J. Flannick, G. Thorleifsson, N. Beer, S. Jacobs +76 more
2014Nature Genetics464 citations Open access
Semantic Scholar
A genome-wide mutational constraint map quantified from variation in 76,156 human genomes
Si-Wei Chen, L. Francioli, J. Goodrich, Ryan L. Collins +40 more
2022bioRxiv261 citations Open access
Semantic Scholar
Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms
Maura Costello, M. Fleharty, Justin Abreu, Y. Farjoun +13 more
2017BMC Genomics255 citations Open access
Semantic Scholar
Functional equivalence of genome sequencing analysis pipelines enables harmonized variant calling across human genetics projects
Allison A. Regier, Y. Farjoun, D. Larson, O. Krasheninina +16 more
2018Nature Communications229 citations Open access
Semantic Scholar
A synthetic-diploid benchmark for accurate variant calling evaluation
Heng Li, Jonathan M. Bloom, Y. Farjoun, M. Fleharty +3 more
2018Nature Methods224 citations Open access
Semantic Scholar
Characterising the loss-of-function impact of 5’ untranslated region variants in 15,708 individuals
N. Whiffin, K. Karczewski, Xiaolei Zhang, S. Chothani +164 more
2019Nature Communications166 citations Open access
Semantic Scholar
Proteome-wide Mendelian randomization implicates nephronectin as an actionable mediator of the effect of obesity on COVID-19 severity
Satoshi Yoshiji, G. Butler-Laporte, Tian-Yuan Lu, J. Willett +27 more
2023Nature Metabolism90 citations Open access
Semantic Scholar
Author Correction: The mutational constraint spectrum quantified from variation in 141,456 humans
K. Karczewski, L. Francioli, Grace Tiao, B. Cummings +62 more
2021Nature85 citations Open access
Semantic Scholar
Cost-efficient whole genome-sequencing using novel mostly natural sequencing-by-synthesis chemistry and open fluidics platform
Gilad Almogy, Mark Pratt, Florian C. Oberstrass, Linda A. Lee +35 more
2022bioRxiv59 citations Open access
Semantic Scholar
Addendum: The mutational constraint spectrum quantified from variation in 141,456 humans
Sanna Gudmundsson, K. Karczewski, L. Francioli, Grace Tiao +63 more
2021Nature56 citations Open access
Semantic Scholar
A low-frequency inactivating AKT2 variant enriched in the Finnish population is associated with fasting insulin levels and type 2 diabetes risk
Alisa K. Manning, H. Highland, Jessica A. Gasser, X. Sim +259 more
2017Diabetes52 citations Open access
Semantic Scholar
Systematic comparison of monoclonal versus polyclonal antibodies for mapping histone modifications by ChIP-seq
Michele Busby, C. Xue, Catherine Li, Y. Farjoun +8 more
2016bioRxiv39 citations Open access
Semantic Scholar
Author Correction: A genomic mutational constraint map using variation in 76,156 human genomes
Si-Wei Chen, L. Francioli, J. Goodrich, Ryan L. Collins +42 more
2024Nature32 citations Open access
Semantic Scholar
Detecting sample swaps in diverse NGS data types using linkage disequilibrium
Nauman Javed, Y. Farjoun, T. Fennell, C. Epstein +2 more
2020Nature Communications31 citations Open access
Semantic Scholar
An exactly conservative particle method for one dimensional scalar conservation laws
Y. Farjoun, Benjamin Seibold
2008Journal of Computational Physics24 citations Open access
Semantic Scholar
Alternative splicing in lung influences COVID-19 severity and respiratory diseases
T. Nakanishi, J. Willett, Y. Farjoun, R. Allen +4 more
2023Nature Communications20 citations Open access
Semantic Scholar
Increasing serum iron levels and their role in the risk of infectious diseases: a Mendelian randomization approach.
G. Butler-Laporte, Y. Farjoun, Yiheng Chen, M. Hultström +6 more
2023International Journal of Epidemiology20 citations Open access
Semantic Scholar
Lean and deep models for more accurate filtering of SNP and INDEL variant calls
S. Friedman, Laura D. Gauthier, Y. Farjoun, E. Banks
2019Bioinform.19 citations
Semantic Scholar
The Tallest Column—A Dynamical System Approach Using a Symmetry Solution
Y. Farjoun, J. Neu
200519 citations
Semantic Scholar
Dehydration is associated with production of organic osmolytes and predicts physical long-term symptoms after COVID-19: a multicenter cohort study
M. Hultström, M. Lipcsey, D. Morrison, T. Nakanishi +13 more
2022Critical Care16 citations Open access
Semantic Scholar
Circulating proteins to predict COVID-19 severity
Chen-Yang Su, Si-Rui Zhou, Edgar Gonzalez-Kozlova, G. Butler-Laporte +62 more
2023Scientific Reports15 citations Open access
Semantic Scholar
New synthetic-diploid benchmark for accurate variant calling evaluation
Heng Li, Jonathan M. Bloom, Y. Farjoun, M. Fleharty +3 more
2017bioRxiv15 citations Open access
Semantic Scholar
Exhaustion of nucleation in a closed system.
Y. Farjoun, J. Neu
2007Physical review. E, Statistical, nonlinear, and soft matter physics15 citations Open access
Semantic Scholar
Recommendations for open data science
Melissa Gymrek, Y. Farjoun
2016GigaScience13 citations Open access
Semantic Scholar
Aggregation according to classical kinetics: from nucleation to coarsening.
Y. Farjoun, J. Neu
2009Physical review. E, Statistical, nonlinear, and soft matter physics13 citations Open access
Semantic Scholar
Solving One Dimensional Scalar Conservation Laws by Particle Management
Y. Farjoun, Benjamin Seibold
200810 citations Open access
Semantic Scholar
The dynamic changes and sex differences of 147 immune-related proteins during acute COVID-19 in 580 individuals
G. Butler-Laporte, Edgar Gonzalez-Kozlova, Chen-Yang Su, Si-Rui Zhou +61 more
2022Clinical Proteomics8 citations Open access
Semantic Scholar
Circulating proteins to predict adverse COVID-19 outcomes
Chen-Yang Su, Si-Rui Zhou, Edgar Gonzalez-Kozlova, G. Butler-Laporte +62 more
2021medRxiv7 citations Open access
Semantic Scholar
A rarefaction-tracking method for hyperbolic conservation laws
Y. Farjoun, Benjamin Seibold
20097 citations Open access
Semantic Scholar
Predicting ExWAS findings from GWAS data: a shorter path to causal genes
K. Liang, Y. Farjoun, Vincenzo Forgetta, Yiheng Chen +3 more
2023Human Genetics6 citations
Semantic Scholar
Alternative splicing in the lung influences COVID-19 severity and respiratory diseases.
T. Nakanishi, Y. Farjoun, J. Willett, R. Allen +3 more
2022medRxiv5 citations Open access
Semantic Scholar
Sequence data and association statistics from 12,940 type 2 diabetes cases and controls
F. Jason, C. Fuchsberger, A. Mahajan, T. Teslovich +297 more
2017Scientific Data5 citations Open access
Semantic Scholar
A validated lineage-derived somatic truth data set enables benchmarking in cancer genome analysis
Megan Shand, J. Soto, Lee T. Lichtenstein, David I. Benjamin +5 more
2020Communications Biology4 citations Open access
Semantic Scholar
Erratum: Sequence data and association statistics from 12,940 type 2 diabetes cases and controls
J. Flannick, C. Fuchsberger, A. Mahajan, T. Teslovich +297 more
2018Scientific Data4 citations Open access
Semantic Scholar
Asymptotics of the Euler number of bipartite graphs
R. Ehrenborg, Y. Farjoun
2007Advances in Applied Mathematics4 citations Open access
Semantic Scholar
Asymptotic and numerical studies of the Becker-Doering model for transient homogeneous nucleation
Luis L. Bonilla, A. Carpio, Y. Farjoun, J. Neu
20064 citations
Semantic Scholar
The Optimal Shape of a Javelin
Y. Farjoun, J. Neu
20054 citations
Semantic Scholar
Proteome-wide Mendelian randomization implicates nephronectin as an actionable mediator of the effect of obesity on COVID-19 severity
Satoshi Yoshiji, G. Butler-Laporte, Tian-Yuan Lu, J. Willett +26 more
2022medRxiv3 citations Open access
Semantic Scholar
The hanging thin rod: A singularly perturbed eigenvalue problem
Y. Farjoun, D. Schaeffer
20103 citations
Semantic Scholar
Resolving Paradoxes of Classical Nucleation Theory
Y. Farjoun, J. Neu
20063 citations
Semantic Scholar
Colocalization of expression transcripts with COVID-19 outcomes is rare across cell states, cell types and organs
J. Willett, Tian-Yuan Lu, T. Nakanishi, Satoshi Yoshiji +4 more
2023Human Genetics2 citations Open access
Semantic Scholar
A Thin Cantilever Beam in a Flow
Y. Farjoun, D. Schaeffer
20112 citations
Semantic Scholar
An exact particle method for scalar conservation laws and its application to stiff reaction kinetics
Y. Farjoun, Benjamin Seibold
20102 citations Open access
Semantic Scholar
Creation of Clusters via a Thermal Quench
Y. Farjoun
20082 citations Open access
Semantic Scholar

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