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M. Hubisz · SciRah

Researcher profile · Semantic Scholar

M. Hubisz

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M. Hubisz — researcher profile on SciRah

h-index: 40
Works: 62
Citations: 19K

Most-cited papers

Inferring weak population structure with the assistance of sample group information
M. Hubisz, D. Falush, M. Stephens, J. Pritchard
2009Molecular Ecology Resources3,490 citations Open access
Semantic Scholar
Detection of nonneutral substitution rates on mammalian phylogenies.
K. Pollard, M. Hubisz, K. Rosenbloom, A. Siepel
2010Genome Research2,359 citations Open access
Semantic Scholar
Evolutionary and Biomedical Insights from the Rhesus Macaque Genome
Richard A. Gibbs, Jeffrey Rogers, M. Katze, Roger E Bumgarner +172 more
2007Science1,392 citations Open access
Semantic Scholar
Genomic scans for selective sweeps using SNP data.
R. Nielsen, Scott H. Williamson, Yuseob Kim, M. Hubisz +2 more
2005Genome Research1,031 citations Open access
Semantic Scholar
A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees
R. Nielsen, C. Bustamante, A. Clark, S. Glanowski +9 more
2005PLoS Biology978 citations Open access
Semantic Scholar
A high-resolution map of human evolutionary constraint using 29 mammals
K. Lindblad-Toh, Manuel Garber, O. Zuk, Michael F. Lin +82 more
2011Nature909 citations Open access
Semantic Scholar
Bayesian inference of ancient human demography from individual genome sequences
I. Gronau, M. Hubisz, Brad Gulko, Charles G. Danko +1 more
2011Nature Genetics591 citations Open access
Semantic Scholar
Patterns of Positive Selection in Six Mammalian Genomes
C. Kosiol, T. Vinař, R. D. da Fonseca, M. Hubisz +3 more
2008PLoS Genetics585 citations Open access
Semantic Scholar
Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
S. Richards, Yue Liu, B. Bettencourt, P. Hradecky +48 more
2005Genome Research561 citations Open access
Semantic Scholar
PHAST and RPHAST: phylogenetic analysis with space/time models
M. Hubisz, K. Pollard, A. Siepel
2011Briefings Bioinform.520 citations Open access
Semantic Scholar
Recent and ongoing selection in the human genome
R. Nielsen, I. Hellmann, M. Hubisz, C. Bustamante +1 more
2007Nature reviews genetics513 citations Open access
Semantic Scholar
Ascertainment bias in studies of human genome-wide polymorphism.
A. Clark, M. Hubisz, C. Bustamante, Scott H. Williamson +1 more
2005Genome Research508 citations Open access
Semantic Scholar
Localizing Recent Adaptive Evolution in the Human Genome
Scott H. Williamson, M. Hubisz, A. Clark, B. Payseur +2 more
2007PLoS Genetics490 citations Open access
Semantic Scholar
A Simple Genetic Architecture Underlies Morphological Variation in Dogs
A. Boyko, P. Quignon, Lin Li, J. Schoenebeck +20 more
2010PLoS Biology467 citations Open access
Semantic Scholar
Ancient gene flow from early modern humans into Eastern Neanderthals
Martin Kuhlwilm, I. Gronau, M. Hubisz, C. de Filippo +18 more
2016Nature418 citations Open access
Semantic Scholar
Proportionally more deleterious genetic variation in European than in African populations
K. Lohmueller, A. Indap, S. Schmidt, A. Boyko +8 more
2008Nature409 citations Open access
Semantic Scholar
Genome-Wide Inference of Ancestral Recombination Graphs
Matthew D. Rasmussen, M. Hubisz, I. Gronau, A. Siepel
2013PLoS Genetics365 citations Open access
Semantic Scholar
SweepFinder2: increased sensitivity, robustness and flexibility
M. DeGiorgio, C. Huber, M. Hubisz, I. Hellmann +1 more
2015Bioinform.295 citations Open access
Semantic Scholar
Non-cell-autonomous cancer progression from chromosomal instability
Jun Li, M. Hubisz, Ethan M. Earlie, Mercedes A. Duran +21 more
2023Nature292 citations Open access
Semantic Scholar
Targets of balancing selection in the human genome.
Aida M. Andrés, M. Hubisz, A. Indap, D. Torgerson +8 more
2009Molecular biology and evolution283 citations Open access
Semantic Scholar
Probabilities of Fitness Consequences for Point Mutations Across the Human Genome
Brad Gulko, M. Hubisz, I. Gronau, A. Siepel
2014Nature Genetics255 citations Open access
Semantic Scholar
Adaptive genic evolution in the Drosophila genomes
J. Shapiro, Wei Huang, Chen-Hui Zhang, M. Hubisz +8 more
2007Proceedings of the National Academy of Sciences of the United States of America246 citations Open access
Semantic Scholar
Evolutionary and Biomedical Insights from the Rhesus Macaque Genome
Kelly E. Bernard, C. Buhay, Mimi N. Chandrabose, K. Delehaunty +86 more
2007216 citations
Semantic Scholar
References and Notes Supporting Online Material Materials and Methods Som Text Figs. S1 and S2 Tables S1 to S7 References Source Code Demographic Histories and Patterns of Linkage Disequilibrium in Chinese and Indian Rhesus Macaques the Rhesus Macaque Genome
H. Carlsson, S. Schapiro, I. Farah, J. Hau +22 more
185 citations
Semantic Scholar
Darwinian and demographic forces affecting human protein coding genes.
R. Nielsen, M. Hubisz, I. Hellmann, D. Torgerson +9 more
2009Genome Research163 citations Open access
Semantic Scholar
Reconstituting the Frequency Spectrum of Ascertained Single-Nucleotide Polymorphism Data
R. Nielsen, M. Hubisz, A. Clark
2004Genetics163 citations
Semantic Scholar
Exploring the genesis and functions of Human Accelerated Regions sheds light on their role in human evolution.
M. Hubisz, K. Pollard
2014Current Opinion in Genetics and Development130 citations Open access
Semantic Scholar
The Role of GC-Biased Gene Conversion in Shaping the Fastest Evolving Regions of the Human Genome
Dennis Kostka, M. Hubisz, A. Siepel, K. Pollard
2011Molecular biology and evolution125 citations Open access
Semantic Scholar
Genome-wide inference of natural selection on human transcription factor binding sites
Leonardo Arbiza, I. Gronau, B. Aksoy, M. Hubisz +3 more
2013Nature Genetics124 citations Open access
Semantic Scholar
Mapping gene flow between ancient hominins through demography-aware inference of the ancestral recombination graph
M. Hubisz, Amy L. Williams, A. Siepel
2019bioRxiv122 citations Open access
Semantic Scholar
Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry
James J. Lewis, Rachel Geltman, Patrick C Pollak, Kathleen E Rondem +10 more
2019Proceedings of the National Academy of Sciences of the United States of America109 citations Open access
Semantic Scholar
Lineage-specific intolerance to oncogenic drivers restricts histological transformation
E. E. Gardner, Ethan M. Earlie, Kate Li, Jerin Thomas +6 more
2023bioRxiv104 citations Open access
Semantic Scholar
Maximum likelihood estimation of ancestral codon usage bias parameters in Drosophila.
R. Nielsen, Vanessa L. Bauer DuMont, M. Hubisz, C. Aquadro
2006Molecular biology and evolution90 citations Open access
Semantic Scholar
A Model-Based Analysis of GC-Biased Gene Conversion in the Human and Chimpanzee Genomes
J. Capra, M. Hubisz, Dennis Kostka, K. Pollard +1 more
2013PLoS Genetics81 citations Open access
Semantic Scholar
Detecting coevolving amino acid sites using Bayesian mutational mapping
Matthew W. Dimmic, M. Hubisz, C. Bustamante, R. Nielsen
2005Intelligent Systems in Molecular Biology67 citations
Semantic Scholar
Patterns of mutation and selection at synonymous sites in Drosophila.
Nadia D. Singh, Vanessa L. Bauer DuMont, M. Hubisz, R. Nielsen +1 more
2007Molecular biology and evolution60 citations Open access
Semantic Scholar
Genomic islands of differentiation in a rapid avian radiation have been driven by recent selective sweeps
Hussein A. Hejase, A. Salman-Minkov, L. Campagna, M. Hubisz +3 more
2020Proceedings of the National Academy of Sciences of the United States of America57 citations Open access
Semantic Scholar
Comparative Genomic Analysis of the Streptococcus dysgalactiae Species Group: Gene Content, Molecular Adaptation, and Promoter Evolution
Haruo Suzuki, T. Lefébure, M. Hubisz, P. P. Pavinski Bitar +3 more
2011Genome Biology and Evolution57 citations Open access
Semantic Scholar
Replacing and additive horizontal gene transfer in Streptococcus.
S. Choi, Matthew D. Rasmussen, M. Hubisz, I. Gronau +2 more
2012Molecular biology and evolution49 citations Open access
Semantic Scholar
Inference of Ancestral Recombination Graphs Using ARGweaver.
M. Hubisz, A. Siepel
2020Methods in molecular biology40 citations Open access
Semantic Scholar
Error and Error Mitigation in Low-Coverage Genome Assemblies
M. Hubisz, Michael F. Lin, Manolis Kellis, A. Siepel
2011PLoS ONE37 citations Open access
Semantic Scholar
Evolutionary genomics: Detecting selection needs comparative data
R. Nielsen, M. Hubisz
2005Nature18 citations
Semantic Scholar
The evolution of the human DNA replication timing program
A. Bracci, Anissa Dallmann, Qiliang Ding, M. Hubisz +2 more
2022bioRxiv16 citations Open access
Semantic Scholar
Rhesus Macaque Genome Sequencing and Analysis Rhesus Macaque Genome Evolutionary and Biomedical Insights from the
Kelly E. Bernard, C. Buhay, Mimi N. Chandrabose, K. Delehaunty +86 more
201014 citations
Semantic Scholar
polymorphism Ascertainment bias in studies of human genome-wide data
A. Clark, M. Hubisz, C. Bustamante, Scott H. Williamson +1 more
20055 citations
Semantic Scholar
Ascertainment bias in studies of human genome-wide Material Supplemental
A. Clark, M. Hubisz, C. Bustamante, Scott H. Williamson +1 more
20053 citations
Semantic Scholar
A Model-Based Analysis of GC-Biased Gene Conversion in the Human and Chimpanzee Genomes Supplementary Information : Text S 1
J. Capra, M. Hubisz, Dennis Kostka, K. Pollard +1 more
20132 citations
Semantic Scholar
Evolution of maize recombination landscape during domestication.
Ruth Epstein, J. Wheeler, M. Hubisz, Jing-Jing Zhai +5 more
2026Proceedings of the National Academy of Sciences of the United States of America0 citations Open access
Semantic Scholar
The maize recombination landscape evolved during domestication
Ruth Epstein, J. Wheeler, M. Hubisz, Qi Sun +5 more
2024bioRxiv0 citations Open access
Semantic Scholar
Abstract 3822: Chromosomal instability shapes the tumor microenvironment through a chronic ER-stress response
Jun Li, M. Hubisz, Ethan M. Earlie, Mercedes A. Duran +13 more
2022Cancer Research0 citations
Semantic Scholar

Frequent co-authors

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A. Siepel×19
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A. Siepel — researcher profile on SciRah
R. Nielsen×17
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C. Bustamante×15
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A. Clark×13
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I. Gronau — researcher profile on SciRah

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K. Pollard — researcher profile on SciRah

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A. Indap — researcher profile on SciRah

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