K. Rosenbloom

Most-cited papers

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
A. Siepel, G. Bejerano, J. S. Pedersen, A. Hinrichs +12 more
2005Genome Research4,106 citations Open access
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The ENCODE (ENCyclopedia Of DNA Elements) Project
E. Feingold, P. Good, M. Guyer, S. Kamholz +193 more
2004Science2,426 citations
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Detection of nonneutral substitution rates on mammalian phylogenies.
K. Pollard, M. Hubisz, K. Rosenbloom, A. Siepel
2010Genome Research2,359 citations Open access
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Initial sequence of the chimpanzee genome and comparison with the human genome
T. Mikkelsen, L. Hillier, E. Eichler, M. Zody +63 more
2005Nature2,350 citations Open access
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Genome sequence of the Brown Norway rat yields insights into mammalian evolution
R. Gibbs, G. Weinstock, M. Metzker, D. Muzny +224 more
2004Nature2,146 citations Open access
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The UCSC Genome Browser Database: update 2006
A. Hinrichs, D. Karolchik, R. Baertsch, Galt P. Barber +23 more
2005Nucleic Acids Res.2,065 citations Open access
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The UCSC Genome Browser database: update 2011
P. Fujita, Brooke L. Rhead, A. Zweig, A. Hinrichs +23 more
2010Nucleic Acids Res.1,908 citations Open access
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A Comparative Encyclopedia of DNA Elements in the Mouse Genome
Feng Yue, Yong Cheng, A. Breschi, J. Vierstra +133 more
2014Nature1,636 citations Open access
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Aligning multiple genomic sequences with the threaded blockset aligner.
M. Blanchette, W. Kent, Cathy Riemer, L. Elnitski +8 more
2004Genome Research1,605 citations Open access
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The UCSC Genome Browser database: update 2010
Brooke L. Rhead, D. Karolchik, Robert M. Kuhn, A. Hinrichs +19 more
2009Nucleic Acids Res.1,347 citations Open access
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Toil enables reproducible, open source, big biomedical data analyses
John Vivian, A. Rao, Frank A. Nothaft, Christopher Ketchum +23 more
2017Nature Biotechnology1,199 citations Open access
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Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics
A. Barbeira, Scott P. Dickinson, Rodrigo Bonazzola, Jiamao Zheng +241 more
2016Nature Communications1,077 citations Open access
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The UCSC Genome Browser database: extensions and updates 2013
L. Meyer, A. Zweig, A. Hinrichs, D. Karolchik +28 more
2012Nucleic Acids Res.1,034 citations Open access
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The UCSC Genome Browser database: 2015 update
K. Rosenbloom, J. Armstrong, Galt P. Barber, J. Casper +25 more
2014Nucleic Acids Res.1,002 citations Open access
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The UCSC Genome Browser database: 2014 update
D. Karolchik, Galt P. Barber, J. Casper, H. Clawson +21 more
2013Nucleic Acids Res.913 citations Open access
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ENCODE Data in the UCSC Genome Browser: year 5 update
K. Rosenbloom, C. A. Sloan, V. Malladi, T. Dreszer +17 more
2012Nucleic Acids Res.813 citations Open access
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The UCSC Genome Browser Database: update 2009
Robert M. Kuhn, D. Karolchik, A. Zweig, Ting Wang +18 more
2008Nucleic Acids Res.702 citations Open access
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The UCSC Genome Browser database: 2019 update
M. Haeussler, A. Zweig, Cath Tyner, Matthew L. Speir +14 more
2018Nucleic Acids Res.700 citations Open access
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The UCSC Genome Browser Database: 2008 update
D. Karolchik, Robert M. Kuhn, R. Baertsch, Galt P. Barber +21 more
2007Nucleic Acids Res.565 citations Open access
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Identification and Classification of Conserved RNA Secondary Structures in the Human Genome
J. S. Pedersen, G. Bejerano, A. Siepel, K. Rosenbloom +5 more
2006PLoS Comput. Biol.556 citations Open access
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Forces Shaping the Fastest Evolving Regions in the Human Genome
K. Pollard, Sofie R. Salama, B. King, A. Kern +9 more
2006PLoS Genetics525 citations Open access
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An encyclopedia of mouse DNA elements (Mouse ENCODE)
J. Stamatoyannopoulos, Michael Snyder, R. Hardison, B. Ren +82 more
2012Genome Biology480 citations Open access
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The UCSC Genome Browser database: 2018 update
J. Casper, A. Zweig, C. Villarreal, Cath Tyner +20 more
2017Nucleic Acids Res.455 citations Open access
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The UCSC Genome Browser database: 2021 update
Jairo Navarro Gonzalez, A. Zweig, Matthew L. Speir, Daniel Schmelter +19 more
2020Nucleic Acids Res.445 citations Open access
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ENCODE whole-genome data in the UCSC Genome Browser
K. Rosenbloom, T. Dreszer, Michael Pheasant, Galt P. Barber +14 more
2009Nucleic Acids Res.439 citations Open access
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A Quantitative Proteome Map of the Human Body
Lihua Jiang, Meng Wang, Shin Lin, Rui-Qi Jian +170 more
2020Cell407 citations Open access
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The UCSC Genome Browser database: extensions and updates 2011
T. Dreszer, D. Karolchik, A. Zweig, A. Hinrichs +25 more
2011Nucleic Acids Res.402 citations Open access
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The UCSC Genome Browser database: 2017 update
Cath Tyner, Galt P. Barber, J. Casper, H. Clawson +22 more
2016Nucleic Acids Res.333 citations Open access
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ENCODE whole-genome data in the UCSC Genome Browser: update 2012
K. Rosenbloom, T. Dreszer, J. Long, V. Malladi +23 more
2011Nucleic Acids Res.309 citations Open access
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28-way vertebrate alignment and conservation track in the UCSC Genome Browser.
W. Miller, K. Rosenbloom, R. Hardison, Min-Mei Hou +22 more
2007Genome Research305 citations Open access
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The UCSC Genome Browser database: 2022 update
Brian T. Lee, Galt P. Barber, Anna Benet-Pagès, J. Casper +21 more
2021Nucleic Acids Res.254 citations Open access
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Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.
E. Margulies, Gregory M. Cooper, G. Asimenos, Daryl J. Thomas +73 more
2007Genome Research219 citations Open access
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ENCODE whole-genome data in the UCSC genome browser (2011 update)
Brian J. Raney, Melissa S. Cline, K. Rosenbloom, T. Dreszer +19 more
2010Nucleic Acids Res.213 citations Open access
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UCSC Genome Browser enters 20th year
Christopher M. Lee, Galt P. Barber, J. Casper, H. Clawson +15 more
2019Nucleic Acids Res.194 citations Open access
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The UCSC Genome Browser database: 2016 update
Matthew L. Speir, A. Zweig, K. Rosenbloom, Brian J. Raney +19 more
2015bioRxiv169 citations Open access
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Rodent evolution: back to the root.
G. Churakov, M. Sadasivuni, K. Rosenbloom, D. Huchon +2 more
2010Molecular biology and evolution146 citations
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Evolutionarily conserved elements in vertebrate , insect , worm , and yeast genomes
A. Siepel, G. Bejerano, J. S. Pedersen, A. Hinrichs +12 more
2015103 citations
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The UCSC SARS-CoV-2 Genome Browser
Jason D. Fernandes, A. Hinrichs, H. Clawson, Jairo Navarro Gonzalez +16 more
2020Nature Genetics94 citations Open access
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The UCSC genome browser database: update 2007
Robert M. Kuhn, D. Karolchik, A. Zweig, Heather Trumbower +21 more
2006Nucleic Acids Res.94 citations Open access
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UCSC Data Integrator and Variant Annotation Integrator
A. Hinrichs, Brian J. Raney, Matthew L. Speir, Brooke L. Rhead +7 more
2016Bioinform.59 citations Open access
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Evolutionarily conserved elements in vertebrate , insect , worm , and yeast genomes
A. Siepel, G. Bejerano, J. S. Pedersen, A. Hinrichs +12 more
200543 citations
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Rapid and efficient analysis of 20,000 RNA-seq samples with Toil
John Vivian, A. Rao, Frank A. Nothaft, Christopher Ketchum +23 more
2016bioRxiv30 citations Open access
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Comparative genomic analysis using the UCSC genome browser.
D. Karolchik, G. Bejerano, A. Hinrichs, Robert M. Kuhn +5 more
2007Methods in molecular biology28 citations
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Use of ENCODE resources to characterize novel proteoforms and missing proteins in the human proteome.
C. Nilsson, E. Mostovenko, Cheryl F. Lichti, K. Ruggles +20 more
2015Journal of Proteome Research21 citations Open access
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Phylogenomic resources at the UCSC Genome Browser.
K. Rosenbloom, James Taylor, S. Schaeffer, J. Kent +2 more
2008Methods in molecular biology13 citations Open access
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Variant Interpretation: UCSC Genome Browser Recommended Track Sets
A. Benet-Pagès, K. Rosenbloom, Luis R. Nassar, Christopher M. Lee +11 more
2021Human Mutation7 citations Open access
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The UCSC Ebola Genome Portal
M. Haeussler, D. Karolchik, H. Clawson, Brian J. Raney +8 more
2014PLOS Currents7 citations Open access
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Genome Browser 28-Way vertebrate alignment and conservation track in the UCSC
A. Siepel, D. Haussler, W. James, Jennifer G. Murphy +16 more
20073 citations
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Del genoma humano a su pangenoma pasando por los consorcios ENCODE y T2T
M. Claros, Catherine Choo, Caroline Ucla, Carine Manzano +238 more
2022Encuentros en la Biología0 citations Open access
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Peer Review #2 of "Efficacy of computational predictions of the functional effect of idiosyncratic pharmacogenetic variants (v0.3)"
Hannah Mcconnell, T. Daniel, Andrews Corresp, Matt A. Field +241 more
20210 citations Open access
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