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C. Aquadro · SciRah

Researcher profile · Semantic Scholar

C. Aquadro

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C. Aquadro — researcher profile on SciRah

h-index: 66
Works: 211
Citations: 15K

Most-cited papers

Distinguishing Between Selective Sweeps and Demography Using DNA Polymorphism Data
J. Jensen, Yuseob Kim, Vanessa DuMont, C. Aquadro +1 more
2005Genetics273 citations
Semantic Scholar
Stepwise Modification of a Modular Enhancer Underlies Adaptation in a Drosophila Population
Mark Rebeiz, J. Pool, V. Kassner, C. Aquadro +1 more
2009Science257 citations Open access
Semantic Scholar
Evolutionary Expressed Sequence Tag Analysis of Drosophila Female Reproductive Tracts Identifies Genes Subjected to Positive Selection
W. Swanson, A. Wong, M. Wolfner, C. Aquadro
2004Genetics240 citations
Semantic Scholar
Diversity and selection in sorghum: simultaneous analyses using simple sequence repeats
A. M. Casa, S. Mitchell, M. Hamblin, H. Sun +4 more
2005Theoretical and Applied Genetics168 citations
Semantic Scholar
Cross-Species Comparison of Drosophila Male Accessory Gland Protein Genes
J. Mueller, K. R. Ram, L. A. Mcgraw, M. B. Bloch-Qazi +4 more
2005Genetics164 citations Open access
Semantic Scholar
Evolutionary Rate Covariation Identifies New Members of a Protein Network Required for Drosophila melanogaster Female Post-Mating Responses
Geoffrey D. Findlay, Jessica L. Sitnik, Wen-Ke Wang, C. Aquadro +2 more
2014PLoS Genetics162 citations Open access
Semantic Scholar
The genetic basis of adaptive pigmentation variation in Drosophila melanogaster
J. Pool, C. Aquadro
2007Molecular Ecology157 citations Open access
Semantic Scholar
The importance of the Neutral Theory in 1968 and 50 years on: A response to Kern and Hahn 2018
J. D. Jensen, B. Payseur, W. Stephan, C. Aquadro +3 more
2018Evolution; international journal of organic evolution150 citations Open access
Semantic Scholar
Coevolution of Interacting Fertilization Proteins
Nathaniel L. Clark, J. Gasper, M. Sekino, Stevan A. Springer +2 more
2009PLoS Genetics145 citations Open access
Semantic Scholar
Comparative structural modeling and inference of conserved protein classes in Drosophila seminal fluid.
J. Mueller, D. Ripoll, C. Aquadro, M. Wolfner
2004Proceedings of the National Academy of Sciences of the United States of America139 citations Open access
Semantic Scholar
Recommendations for improving statistical inference in population genomics
Parul Johri, C. Aquadro, M. Beaumont, B. Charlesworth +9 more
2021bioRxiv128 citations Open access
Semantic Scholar
Evolutionary rate covariation reveals shared functionality and coexpression of genes.
Nathan L. Clark, Eric Alani, C. Aquadro
2012Genome Research124 citations Open access
Semantic Scholar
A Nutrient-Driven tRNA Modification Alters Translational Fidelity and Genome-wide Protein Coding across an Animal Genus
John M. Zaborske, Vanessa L. Bauer DuMont, Edward W. J. Wallace, T. Pan +2 more
2014PLoS Biology116 citations Open access
Semantic Scholar
Challenges of Detecting Directional Selection After a Bottleneck: Lessons From Sorghum bicolor
M. Hamblin, A. M. Casa, Hong Sun, Seth C. Murray +3 more
2006Genetics103 citations Open access
Semantic Scholar
On the Utility of Linkage Disequilibrium as a Statistic for Identifying Targets of Positive Selection in Nonequilibrium Populations
J. Jensen, Kevin R. Thornton, C. Bustamante, C. Aquadro
2007Genetics101 citations Open access
Semantic Scholar
Approaches for identifying targets of positive selection.
J. Jensen, A. Wong, C. Aquadro
2007Trends in Genetics90 citations
Semantic Scholar
Maximum likelihood estimation of ancestral codon usage bias parameters in Drosophila.
R. Nielsen, Vanessa L. Bauer DuMont, M. Hubisz, C. Aquadro
2006Molecular biology and evolution90 citations Open access
Semantic Scholar
History and Structure of Sub-Saharan Populations of Drosophila melanogaster
J. Pool, C. Aquadro
2006Genetics81 citations Open access
Semantic Scholar
Negative epistasis between natural variants of the Saccharomyces cerevisiae MLH1 and PMS1 genes results in a defect in mismatch repair.
J. Heck, J. L. Argueso, Zekeriyya Gemici, R. Reeves +3 more
2006Proceedings of the National Academy of Sciences of the United States of America79 citations
Semantic Scholar
Microsatellite Mutation Models
R. Sainudiin, R. Durrett, C. Aquadro, R. Nielsen
2004Genetics76 citations
Semantic Scholar
Finding of male-killing Spiroplasma infecting Drosophila melanogaster in Africa implies transatlantic migration of this endosymbiont
J. Pool, A. Wong, C. Aquadro
2006Heredity65 citations Open access
Semantic Scholar
Patterns of mutation and selection at synonymous sites in Drosophila.
Nadia D. Singh, Vanessa L. Bauer DuMont, M. Hubisz, R. Nielsen +1 more
2007Molecular biology and evolution60 citations Open access
Semantic Scholar
Evidence for positive selection on Drosophila melanogaster seminal fluid protease homologs.
A. Wong, M. Turchin, M. Wolfner, C. Aquadro
2008Molecular biology and evolution57 citations Open access
Semantic Scholar
Evidence of amino acid diversity-enhancing selection within humans and among primates at the candidate sperm-receptor gene PKDREJ.
D. Hamm, Brian S. Mautz, M. Wolfner, C. Aquadro +1 more
2007American Journal of Human Genetics57 citations Open access
Semantic Scholar
DNA Variability and Divergence at the Notch Locus in Drosophila melanogaster and D. simulans: A Case of Accelerated Synonymous Site Divergence
Vanessa DuMont, Justin C. Fay, P. Calabrese, C. Aquadro
2004Genetics53 citations Open access
Semantic Scholar
A novel method to detect proteins evolving at correlated rates: identifying new functional relationships between coevolving proteins.
Nathaniel L. Clark, C. Aquadro
2010Molecular biology and evolution49 citations Open access
Semantic Scholar
Multiple Signatures of Positive Selection Downstream of Notch on the X Chromosome in Drosophila melanogaster
Vanessa L. Bauer DuMont, C. Aquadro
2005Genetics48 citations
Semantic Scholar
Fitting background-selection predictions to levels of nucleotide variation and divergence along the human autosomes.
Floyd A. Reed, J. Akey, C. Aquadro
2005Genome Research47 citations Open access
Semantic Scholar
Strong evidence for lineage and sequence specificity of substitution rates and patterns in Drosophila.
Nadia D. Singh, P. Arndt, A. Clark, C. Aquadro
2009Molecular biology and evolution46 citations Open access
Semantic Scholar
A Scan of Molecular Variation Leads to the Narrow Localization of a Selective Sweep Affecting Both Afrotropical and Cosmopolitan Populations of Drosophila melanogaster
J. Pool, Vanessa L. Bauer DuMont, J. Mueller, C. Aquadro
2006Genetics46 citations
Semantic Scholar
Mutation and evolution of microsatellites in Drosophila melanogaster
M. Schug, Carolyn M. Hutter, M. Noor, C. Aquadro
2004Genetica42 citations
Semantic Scholar
Incompatibilities Involving Yeast Mismatch Repair Genes: A Role for Genetic Modifiers and Implications for Disease Penetrance and Variation in Genomic Mutation Rates
Ann M Demogines, A. Wong, C. Aquadro, Eric Alani
2008PLoS Genetics41 citations Open access
Semantic Scholar
The Drosophila bag of marbles Gene Interacts Genetically with Wolbachia and Shows Female-Specific Effects of Divergence
Heather A. Flores, Jaclyn E. Jackie Bubnell, C. Aquadro, D. Barbash
2015PLoS Genetics40 citations Open access
Semantic Scholar
Evolutionary Rate Covariation in Meiotic Proteins Results from Fluctuating Evolutionary Pressure in Yeasts and Mammals
Nathan L. Clark, Eric Alani, C. Aquadro
2013Genetics40 citations Open access
Semantic Scholar
Recurrent positive selection at bgcn, a key determinant of germ line differentiation, does not appear to be driven by simple coevolution with its partner protein bam.
Vanessa L. Bauer DuMont, Heather A. Flores, Mark H. Wright, C. Aquadro
2007Molecular biology and evolution39 citations
Semantic Scholar
Population Genomics of Infectious and Integrated Wolbachia pipientis Genomes in Drosophila ananassae
J. Choi, Jaclyn E. Jackie Bubnell, C. Aquadro
2015Genome Biology and Evolution38 citations Open access
Semantic Scholar
Gene flow and gene flux shape evolutionary patterns of variation in Drosophila subobscura
Cinta Pegueroles, C. Aquadro, F. Mestres, Marta Pascual
2013Heredity38 citations Open access
Semantic Scholar
Fine-Scale Heterogeneity in Crossover Rate in the garnet-scalloped Region of the Drosophila melanogaster X Chromosome
Nadia D. Singh, Eric A. Stone, C. Aquadro, A. Clark
2013Genetics33 citations Open access
Semantic Scholar
Phylogenetic incongruence in the Drosophila melanogaster species group.
A. Wong, J. Jensen, J. Pool, C. Aquadro
2007Molecular Phylogenetics and Evolution33 citations Open access
Semantic Scholar
Directional evolution of size coupled with ascertainment bias for variation in Drosophila microsatellites.
W. Amos, Carolyn M. Hutter, M. Schug, C. Aquadro
2003Molecular biology and evolution33 citations
Semantic Scholar
Mutation, selection and the future of human evolution.
Floyd A. Reed, C. Aquadro
2006Trends in Genetics31 citations
Semantic Scholar
Brief communication: ancient DNA prospects from Sri Lankan highland dry caves support an emerging global pattern.
Floyd A. Reed, Elias J. Kontanis, K. A. Kennedy, C. Aquadro
2003American Journal of Physical Anthropology31 citations
Semantic Scholar
Estimation of fine-scale recombination intensity variation in the white-echinus interval of D. melanogaster
Nadia D. Singh, C. Aquadro, A. Clark
2009Journal of Molecular Evolution30 citations Open access
Semantic Scholar
Positive Darwinian Selection Promotes Heterogeneity Among Members of the Antifreeze Protein Multigene Family
W. Swanson, C. Aquadro
2002Journal of Molecular Evolution28 citations
Semantic Scholar
A Genetic Incompatibility Accelerates Adaptation in Yeast
Duyen T Bui, E. Dine, James B. Anderson, C. Aquadro +1 more
2015PLoS Genetics26 citations Open access
Semantic Scholar
The coevolutionary period of Wolbachia pipientis infecting Drosophila ananassae and its impact on the evolution of the host germline stem cell regulating genes.
J. Choi, C. Aquadro
2014Molecular biology and evolution26 citations Open access
Semantic Scholar
Mitch – a rapidly evolving component of the Ndc80 kinetochore complex required for correct chromosome segregation in Drosophila
Byron C. Williams, G. Leung, H. Maiato, A. Wong +6 more
2007Journal of Cell Science26 citations Open access
Semantic Scholar
Patterns of Sequence Variability and Divergence at the diminutive Gene Region of Drosophila melanogaster: Complex Patterns Suggest an Ancestral Selective Sweep
J. Jensen, Vanessa L. Bauer DuMont, Adeline B Ashmore, A. Gutierréz +1 more
2007Genetics26 citations Open access
Semantic Scholar
Evidence for a Selective Sweep on Chromosome 1 of Cultivated Sorghum
A. M. Casa, S. Mitchell, J. Jensen, M. Hamblin +3 more
200624 citations
Semantic Scholar
Field Identification of the Mice Peromyscus leucopus noveboracensis and P. maniculatus gracilis in Central New York
E. S. Lindquist, C. Aquadro, D. Mcclearn, K. McGowan
200324 citations Open access
Semantic Scholar

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