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V. Markowitz · SciRah

Researcher profile · Semantic Scholar

V. Markowitz

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V. Markowitz — researcher profile on SciRah

h-index: 52
Works: 432
Citations: 34K

Most-cited papers

IMG/M: integrated genome and metagenome comparative data analysis system
I-Min A. Chen, V. Markowitz, K. Chu, K. Palaniappan +12 more
2016Nucleic Acids Res.422 citations Open access
Semantic Scholar
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
M. Huntemann, Natalia N. Ivanova, K. Mavromatis, H. Tripp +9 more
2015Standards in Genomic Sciences314 citations Open access
Semantic Scholar
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
N. Kyrpides, P. Hugenholtz, J. Eisen, T. Woyke +60 more
2014PLoS Biology208 citations Open access
Semantic Scholar
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
D. Páez-Espino, I-Min A. Chen, K. Palaniappan, A. Ratner +28 more
2016Nucleic Acids Res.184 citations Open access
Semantic Scholar
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
M. Huntemann, Natalia N. Ivanova, K. Mavromatis, H. Tripp +10 more
2016Standards in Genomic Sciences137 citations Open access
Semantic Scholar
Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
C. Beukes, M. Palmer, Puseletso Manyaka, Wai Y. Chan +20 more
2017Frontiers in Microbiology106 citations Open access
Semantic Scholar
IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites
M. Hadjithomas, I-Min A. Chen, K. Chu, A. Ratner +10 more
2015mBio99 citations Open access
Semantic Scholar
Delineating bacterial subspecies Additional file 3 to : “ Complete genome sequence of DSM 30083 T , the type strain ( U 5 / 41 T ) of Escherichia coli , and a proposal for delineating subspecies in microbial taxonomy
J. Meier-Kolthoff, R. Hahnke, Jörn Petersen, C. Scheuner +15 more
201489 citations
Semantic Scholar
IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
M. Hadjithomas, I-Min A. Chen, K. Chu, Jinghua Huang +6 more
2016Nucleic Acids Res.78 citations Open access
Semantic Scholar
Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China
Xiao-Yang Gao, Xiao-Yang Zhi, Hong-Wei Li, Yu Zhou +14 more
2015Standards in Genomic Sciences72 citations Open access
Semantic Scholar
Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
I-Min A. Chen, V. Markowitz, K. Palaniappan, E. Szeto +10 more
2016BMC Genomics51 citations Open access
Semantic Scholar
Absence of genome reduction in diverse, facultative endohyphal bacteria
D. Baltrus, Kevin M. Dougherty, K. Arendt, M. Huntemann +15 more
2016bioRxiv46 citations Open access
Semantic Scholar
Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil
Marlen C. Rice, J. Norton, F. Valois, A. Bollmann +22 more
2016Standards in Genomic Sciences37 citations Open access
Semantic Scholar
Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina
L. S. Tisa, N. Beauchemin, Michael N. Cantor, T. Furnholm +22 more
2015Genome Announcements30 citations Open access
Semantic Scholar
Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain R7A
Simon Kelly, J. Sullivan, C. Ronson, R. Tian +13 more
2014Standards in Genomic Sciences24 citations Open access
Semantic Scholar
Ten years of maintaining and expanding a microbial genome and metagenome analysis system.
V. Markowitz, I-Min A. Chen, K. Chu, A. Pati +2 more
2015Trends in Microbiology21 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512
S. D. De Meyer, E. Fabiano, R. Tian, P. van Berkum +9 more
2015Standards in Genomic Sciences21 citations Open access
Semantic Scholar
Permanent draft genome of Thermithiobaclillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia
R. Boden, L. Hutt, M. Huntemann, A. Clum +13 more
2016Standards in Genomic Sciences20 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of Rhizobium sullae strain WSM1592; a Hedysarum coronarium microsymbiont from Sassari, Italy
R. Yates, J. Howieson, S. D. De Meyer, R. Tian +11 more
2015Standards in Genomic Sciences17 citations Open access
Semantic Scholar
High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2T (DSM 21788T), a valuable source of polysaccharide decomposing enzymes
R. Hahnke, E. Stackebrandt, J. Meier-Kolthoff, B. Tindall +16 more
2015Standards in Genomic Sciences16 citations Open access
Semantic Scholar
Complete genome sequence of Actinosynnema mirum type strain (101)
M. Land, A. Lapidus, S. Mayilraj, Feng Chen +36 more
201416 citations
Semantic Scholar
High quality draft genome sequence of Meganema perideroedes str. Gr1T and a proposal for its reclassification to the family Meganemaceae fam. nov.
S. McIlroy, A. Lapidus, T. R. Thomsen, James Han +11 more
2015Standards in Genomic Sciences15 citations Open access
Semantic Scholar
Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
M. Huntemann, Natalia N. Ivanova, K. Mavromatis, H. Tripp +9 more
2016Standards in Genomic Sciences13 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India
H. Gehlot, J. Ardley, N. Tak, R. Tian +16 more
2016Standards in Genomic Sciences13 citations Open access
Semantic Scholar
Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022)
A. Pati, K. Labutti, R. Pukall, Matt Nolan +33 more
201413 citations
Semantic Scholar
High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains
Arantxa Peña, A. Busquets, M. Gomila, M. Mulet +12 more
2016Standards in Genomic Sciences12 citations Open access
Semantic Scholar
Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and “Thermoanaerobacter cellulolyticus”
Laura L. Lee, J. Izquierdo, Sara E. Blumer-Schuette, J. Zurawski +21 more
2015Genome Announcements12 citations Open access
Semantic Scholar
Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium
F. Rojas-Rojas, E. Tapia-García, Maskit Maymon, Ethan Humm +15 more
2017Standards in Genomic Sciences11 citations Open access
Semantic Scholar
Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium
T. Gutierrez, William B. Whitman, M. Huntemann, A. Copeland +17 more
2015Genome Announcements10 citations Open access
Semantic Scholar
Genome Sequence of Porticoccus hydrocarbonoclasticus Strain MCTG13d, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton
T. Gutierrez, William B. Whitman, M. Huntemann, A. Copeland +17 more
2015Genome Announcements10 citations Open access
Semantic Scholar
High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409T with an incomplete denitrification pathway
En-Min Zhou, S. Murugapiran, Chrisabelle C. Mefferd, Lan Liu +22 more
2016Standards in Genomic Sciences9 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of Ensifer meliloti strain 4H41, an effective salt- and drought-tolerant microsymbiont of Phaseolus vulgaris
R. Mhamdi, J. Ardley, R. Tian, R. Seshadri +7 more
2015Standards in Genomic Sciences9 citations Open access
Semantic Scholar
High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism
B. Hedlund, S. Murugapiran, M. Huntemann, A. Clum +17 more
2015Genome Announcements9 citations Open access
Semantic Scholar
High quality draft genome sequence of Leucobacter chironomi strain MM2LBT (DSM 19883T) isolated from a Chironomus sp. egg mass
Sivan Laviad, A. Lapidus, A. Copeland, T. Reddy +9 more
2015Standards in Genomic Sciences9 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of Bradyrhizobium sp. Tv2a.2, a microsymbiont of Tachigali versicolor discovered in Barro Colorado Island of Panama
R. Tian, M. Parker, R. Seshadri, T. Reddy +8 more
2015Standards in Genomic Sciences8 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176
S. D. De Meyer, R. Tian, R. Seshadri, T. Reddy +8 more
2015Standards in Genomic Sciences8 citations Open access
Semantic Scholar
High-quality draft genome sequence of Gracilimonas tropica CL-CB462T (DSM 19535T), isolated from a Synechococcus culture
D. Choi, Chisang Ahn, G. Jang, A. Lapidus +13 more
2015Standards in Genomic Sciences8 citations Open access
Semantic Scholar
Complete genome sequence of Archaeoglobus profundus type strain (AV18)
M. von Jan, A. Lapidus, T. Del Rio, A. Copeland +40 more
20148 citations
Semantic Scholar
Draft Genome Sequence of Heavy Metal-Resistant Cupriavidus alkaliphilus ASC-732T, Isolated from Agave Rhizosphere in the Northeast of Mexico
F. Rojas-Rojas, M. Huntemann, A. Clum, M. Pillay +12 more
2016Genome Announcements7 citations Open access
Semantic Scholar
Corrigendum: Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
C. Beukes, M. Palmer, Puseletso Manyaka, Wai Y. Chan +20 more
2018Frontiers in Microbiology6 citations Open access
Semantic Scholar
Erratum to: Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia
R. Boden, L. Hutt, M. Huntemann, A. Clum +13 more
2016Standards in Genomic Sciences6 citations Open access
Semantic Scholar
Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton
T. Gutierrez, William B. Whitman, M. Huntemann, A. Copeland +17 more
2016Genome Announcements6 citations Open access
Semantic Scholar
Draft Genome Sequence of the Cellulolytic and Xylanolytic Thermophile Clostridium clariflavum Strain 4-2a
E. A. Rooney, K. Rowe, Anna Guseva, M. Huntemann +16 more
2015Genome Announcements6 citations Open access
Semantic Scholar
Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton
T. Gutierrez, Haydn Frank Thompson, A. Angelova, William B. Whitman +19 more
2015Genome Announcements6 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of the Mimosa asperata - nodulating Cupriavidus sp. strain AMP6
S. D. De Meyer, M. Parker, P. van Berkum, R. Tian +9 more
2015Standards in Genomic Sciences6 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea
S. Ntougias, A. Lapidus, A. Copeland, T. Reddy +8 more
2015Standards in Genomic Sciences6 citations Open access
Semantic Scholar
Genome sequence of the Medicago-nodulating Ensifer meliloti commercial inoculant strain RRI128
W. Reeve, R. Ballard, E. Drew, R. Tian +13 more
2014Standards in Genomic Sciences6 citations Open access
Semantic Scholar
Genome sequence of Microvirga lupini strain LUT6T, a novel Lupinus alphaproteobacterial microsymbiont from Texas
W. Reeve, M. Parker, R. Tian, L. Goodwin +12 more
2014Standards in Genomic Sciences5 citations Open access
Semantic Scholar
High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk
Sivan Laviad-Shitrit, M. Göker, M. Huntemann, A. Clum +14 more
2017Standards in Genomic Sciences4 citations Open access
Semantic Scholar
High-Quality Draft Genomes from Thermus caliditerrae YIM 77777 and T. tengchongensis YIM 77401, Isolates from Tengchong, China
Chrisabelle C. Mefferd, En-Min Zhou, Tian-Tian Yu, Ming Hong +20 more
2016Genome Announcements4 citations Open access
Semantic Scholar

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