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T. Woyke · SciRah

Researcher profile · Semantic Scholar

T. Woyke

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T. Woyke — researcher profile on SciRah

h-index: 98
Works: 806
Citations: 46K

Most-cited papers

A genomic catalog of Earth’s microbiomes
Stephen Nayfach, S. Roux, R. Seshadri, D. Udwary +263 more
2020Nature Biotechnology783 citations Open access
Semantic Scholar
Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria
A. Hördt, M. G. López, J. Meier-Kolthoff, M. Schleuning +6 more
2020Frontiers in Microbiology436 citations Open access
Semantic Scholar
IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata
A. Camargo, Stephen Nayfach, I-Min A. Chen, K. Palaniappan +13 more
2022Nucleic Acids Res.406 citations Open access
Semantic Scholar
The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
I-Min A. Chen, K. Chu, K. Palaniappan, A. Ratner +11 more
2020Nucleic Acids Res.396 citations Open access
Semantic Scholar
The IMG/M data management and analysis system v.7: content updates and new features
I-Min A. Chen, K. Chu, K. Palaniappan, A. Ratner +18 more
2022Nucleic Acids Res.343 citations Open access
Semantic Scholar
Giant virus diversity and host interactions through global metagenomics
F. Schulz, S. Roux, D. Páez-Espino, S. Jungbluth +7 more
2020Nature315 citations Open access
Semantic Scholar
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses
S. Roux, D. Páez-Espino, I-Min A. Chen, K. Palaniappan +11 more
2020Nucleic Acids Res.304 citations Open access
Semantic Scholar
Unraveling the functional dark matter through global metagenomics
Georgios A Pavlopoulos, Fotis A. Baltoumas, Si-Rui Liu, Oguz Selvitopi +128 more
2023Nature179 citations Open access
Semantic Scholar
Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea
G. Chadwick, C. Skennerton, R. Laso-Pérez, Andy O. Leu +13 more
2021bioRxiv125 citations Open access
Semantic Scholar
Giant virus biology and diversity in the era of genome-resolved metagenomics
F. Schulz, C. Abergel, T. Woyke
2022Nature Reviews Microbiology123 citations Open access
Semantic Scholar
A catalog of the diversity and ubiquity of bacterial microcompartments
M. Sutter, Matthew R Melnicki, F. Schulz, T. Woyke +1 more
2021Nature Communications111 citations Open access
Semantic Scholar
A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
A. Rodríguez-Gijón, J. Nuy, M. Mehrshad, M. Buck +3 more
2021bioRxiv99 citations Open access
Semantic Scholar
Ancestral Absence of Electron Transport Chains in Patescibacteria and DPANN
Jacob P. Beam, E. Becraft, Julia M. Brown, F. Schulz +18 more
2020bioRxiv86 citations Open access
Semantic Scholar
A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles
Jean-Marie Volland, Silvina Gonzalez-Rizzo, O. Gros, T. Tyml +16 more
2022Science79 citations Open access
Semantic Scholar
IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.
A. Camargo, L. Call, S. Roux, Stephen Nayfach +20 more
2023Nucleic Acids Research71 citations Open access
Semantic Scholar
Ecological and genomic analyses of candidate phylum WPS-2 bacteria in an unvegetated soil.
Andriy Sheremet, Gareth M. Jones, J. Jarett, R. Bowers +8 more
2020Environmental Microbiology69 citations
Semantic Scholar
Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage
D. Boeuf, J. Eppley, D. Mende, R. Malmstrom +2 more
2021Microbiome64 citations Open access
Semantic Scholar
Insights into the dynamics between viruses and their hosts in a hot spring microbial mat
J. Jarett, M. Džunková, F. Schulz, S. Roux +13 more
2020The ISME Journal62 citations Open access
Semantic Scholar
Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
R. Seshadri, S. Roux, Katharina J. Huber, Dongying Wu +36 more
2022Cell Genomics55 citations Open access
Semantic Scholar
Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Cale O. Seymour, M. Palmer, E. Becraft, R. Stepanauskas +18 more
2023Nature Microbiology47 citations Open access
Semantic Scholar
Recoding of stop codons expands the metabolic potential of two novel Asgardarchaeota lineages
Jiarui Sun, P. Evans, Emma J. Gagen, B. Woodcroft +4 more
2021ISME Communications46 citations Open access
Semantic Scholar
Functional Signatures of the Epiphytic Prokaryotic Microbiome of Agaves and Cacti
V. Flores-Núñez, Citlali Fonseca-García, D. Desgarennes, E. Eloe-Fadrosh +2 more
2020Frontiers in Microbiology43 citations Open access
Semantic Scholar
Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea
Ranjani Murali, Hang Yu, D. Speth, Fabai Wu +10 more
2023PLoS Biology42 citations Open access
Semantic Scholar
Lytic archaeal viruses infect abundant primary producers in Earth’s crust
J. Rahlff, Victoria Turzynski, S. Esser, Indra Monsees +7 more
2021Nature Communications42 citations Open access
Semantic Scholar
A pipeline for targeted metagenomics of environmental bacteria
Anissa Grieb, R. Bowers, M. Oggerin, D. Goudeau +4 more
2020Microbiome42 citations Open access
Semantic Scholar
High Potential for Biomass-Degrading Enzymes Revealed by Hot Spring Metagenomics
Nicholas J. Reichart, R. Bowers, T. Woyke, R. Hatzenpichler
2021Frontiers in Microbiology40 citations Open access
Semantic Scholar
Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community
Pratibha Panwar, M. Allen, T. Williams, Alyce M. Hancock +14 more
2020Microbiome38 citations Open access
Semantic Scholar
Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
A. Klonowska, L. Moulin, J. Ardley, Florence Braun +11 more
2020BMC Genomics37 citations Open access
Semantic Scholar
Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
R. Bowers, Stephen Nayfach, F. Schulz, S. Jungbluth +10 more
2021The ISME Journal35 citations Open access
Semantic Scholar
Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism
Olga A. Lastovetsky, Lev D. Krasnovsky, Xiao-Tian Qin, M. Gaspar +15 more
2020mBio34 citations Open access
Semantic Scholar
Genomes OnLine Database (GOLD) v.10: new features and updates.
Supratim Mukherjee, Dimitrios Stamatis, C. Li, G. Ovchinnikova +9 more
2024Nucleic Acids Research30 citations Open access
Semantic Scholar
Genomic Analysis of the Yet-Uncultured Binatota Reveals Broad Methylotrophic, Alkane-Degradation, and Pigment Production Capacities
Chelsea L Murphy, Andriy Sheremet, P. Dunfield, J. Spear +4 more
2021mBio27 citations Open access
Semantic Scholar
Description of Candidatus Mesopelagibacter carboxydoxydans and Candidatus Anoxipelagibacter denitrificans: Nitrate-reducing SAR11 genera that dominate mesopelagic and anoxic marine zones.
C. Ruiz-Pérez, Anthony D. Bertagnolli, D. Tsementzi, T. Woyke +2 more
2021Systematic and Applied Microbiology22 citations Open access
Semantic Scholar
Mixotrophic Iron-Oxidizing Thiomonas Isolates from an Acid Mine Drainage-Affected Creek
D. Akob, Michelle Hallenbeck, F. Beulig, M. Fabisch +7 more
2020Applied and Environmental Microbiology22 citations Open access
Semantic Scholar
Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past
M. Palmer, Jonathan K Covington, En-Min Zhou, Scott C Thomas +23 more
2023The ISME Journal21 citations Open access
Semantic Scholar
Morphological and Genomic Features of the New Klosneuvirinae Isolate Fadolivirus IHUMI-VV54
J. Andréani, F. Schulz, F. di Pinto, A. Levasseur +2 more
2021Frontiers in Microbiology20 citations Open access
Semantic Scholar
A predicted CRISPR-mediated symbiosis between uncultivated archaea
S. Esser, J. Rahlff, Wei-Shu Zhao, Michael Predl +22 more
2023Nature Microbiology19 citations Open access
Semantic Scholar
Zymomonas diversity and potential for biofuel production
Magdalena M. Felczak, R. Bowers, T. Woyke, Michaela A. TerAvest
2021Biotechnology for Biofuels19 citations Open access
Semantic Scholar
Genomics discovery of giant fungal viruses from subsurface oceanic crustal fluids
A. Bhattacharjee, F. Schulz, T. Woyke, B. Orcutt +1 more
2023ISME Communications18 citations Open access
Semantic Scholar
Advantages and Limits of Metagenomic Assembly and Binning of a Giant Virus
F. Schulz, J. Andréani, R. Francis, H. Boudjemaa +4 more
2020mSystems18 citations Open access
Semantic Scholar
Community Structure and Microbial Associations in Sediment-Free Methanotrophic Enrichment Cultures from a Marine Methane Seep
Hang Yu, D. Speth, S. Connon, D. Goudeau +3 more
2022Applied and Environmental Microbiology17 citations Open access
Semantic Scholar
Author Correction: A genomic catalog of Earth’s microbiomes
Stephen Nayfach, S. Roux, R. Seshadri, D. Udwary +28 more
2021Nature Biotechnology17 citations Open access
Semantic Scholar
Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas
M. Pena, R. Bhandari, R. Bowers, Kylie Weis +8 more
2023bioRxiv16 citations Open access
Semantic Scholar
Protist impacts on marine cyanovirocell metabolism
C. Howard-Varona, S. Roux, B. Bowen, Leslie P. Silva +7 more
2022ISME Communications16 citations Open access
Semantic Scholar
A single-cell genomics pipeline for environmental microbial eukaryotes
D. Ciobanu, A. Clum, S. Ahrendt, William B. Andreopoulos +18 more
2021iScience16 citations Open access
Semantic Scholar
Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica.
D. Roldán, N. Kyrpides, T. Woyke, N. Shapiro +5 more
2020International Journal of Systematic and Evolutionary Microbiology16 citations Open access
Semantic Scholar
Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Kiritimatiellaeota Strains Isolated from the Continental Deep Subsurface
Joshua D. Sackett, B. Kruger, E. Becraft, J. Jarett +3 more
2019Microbiology Resource Announcements16 citations Open access
Semantic Scholar
Multiomics in the central Arctic Ocean for benchmarking biodiversity change
T. Mock, William Boulton, J. Balmonte, K. Barry +53 more
2022PLoS Biology13 citations Open access
Semantic Scholar
DNA Methylation in Ensifer Species during Free-Living Growth and during Nitrogen-Fixing Symbiosis with Medicago spp.
G. diCenzo, L. Cangioli, Quentin Nicoud, Janis H. T. Cheng +7 more
2021bioRxiv13 citations Open access
Semantic Scholar
Publisher Correction: A genomic catalog of Earth’s microbiomes
Stephen Nayfach, S. Roux, R. Seshadri, D. Udwary +28 more
2020Nature Biotechnology12 citations Open access
Semantic Scholar

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